mRNA_L-elsbetiae_contig728.16144.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig728.16144.1
Unique NamemRNA_L-elsbetiae_contig728.16144.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig728.16144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig728contigL-elsbetiae_contig728:641..2414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size337
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816810.7403119-CDS-L-elsbetiae_contig728:640..7001622816810.7403119-CDS-L-elsbetiae_contig728:640..700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig728 641..700 -
1691683831.0276923-CDS-L-elsbetiae_contig728:640..7001691683831.0276923-CDS-L-elsbetiae_contig728:640..700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig728 641..700 -
1622816810.7855644-CDS-L-elsbetiae_contig728:2138..24141622816810.7855644-CDS-L-elsbetiae_contig728:2138..2414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig728 2139..2414 -
1691683831.0416436-CDS-L-elsbetiae_contig728:2138..24141691683831.0416436-CDS-L-elsbetiae_contig728:2138..2414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig728 2139..2414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig728.16144.1prot_L-elsbetiae_contig728.16144.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig728 641..2414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig728.16144.1

>prot_L-elsbetiae_contig728.16144.1 ID=prot_L-elsbetiae_contig728.16144.1|Name=mRNA_L-elsbetiae_contig728.16144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MPRSLLEPTGGSDGGGGGGGSGGGGLGKASLTTGVGVDAPVVRRPRKSPW
DGGAGAGDLPAGGLAAEEPGAAAAAAAVAEDTRTGMEMLSDHVLSCFLEE
FNRLLSDAIFEA
back to top

mRNA from alignment at L-elsbetiae_contig728:641..2414-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig728.16144.1 ID=mRNA_L-elsbetiae_contig728.16144.1|Name=mRNA_L-elsbetiae_contig728.16144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1774bp|location=Sequence derived from alignment at L-elsbetiae_contig728:641..2414- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCACGGTCGCTACTTGAGCCCACTGGTGGGAGCGACGGTGGCGGCGG
CGGCGGCGGCAGCGGCGGCGGCGGCCTCGGTAAGGCATCTTTGACCACTG
GCGTCGGTGTTGATGCGCCTGTGGTGCGACGGCCCCGCAAAAGCCCATGG
GATGGCGGCGCCGGCGCCGGCGATCTACCTGCGGGGGGGTTGGCGGCGGA
AGAACCCGGCGCTGCTGCTGCTGCTGCTGCTGTGGCAGAGGACACTCGAA
CGGGGATGGAGATGCTCTCTGATCATGTGCGTGGTGGGGTTGGCGAGCCA
TGCCTGGTGCCCTCTCTCTCCTGTGCTATCTGTTGTTGTCGTTGTTTCTT
CACATTAAAAACCGTTCCGATCTCTCCGCCCAGTACCTCCCCATGGGTGT
ACTATCCCAACACTTGATGCGGTCGATTCCCGTGGTCACAGGCTAACTTT
ACTTGAATACCTAGAAAAAAGGTATATATCATTTACGAAAATAAAATGAG
TCCGAAAGGTCATCAAAGCGATAGAAATCAAAGACAACCAGTGTGGAGCC
TCCCGCTCCCCTCTAAATACACGCTACATATGCGAGGTAAAAACAATGAC
TGGACAAGCCAGCATCACCTGTTACGCCGTGCCGTGTGCTGTACCGAGTG
CTGTGGGCGTGTCGGGGGTTTGAGTTGCGGGATCAACCCAACAACAGTAG
TGCGCTGTAAAAATAGTCGCCGTGTTTTTGTGTGTCGTCTCCGCGACGTT
CGCAACGGGGGCACGGTGAACAATACTCCTACCCACGGGGTATTGTGTTT
AGTTTCTAGATACATAAGGCGGCGCCGGCGCCCGGGAATCCGCCAACATT
GGCAGGAAGGAAAAGTCTGCCAACACGAAAACGCCTGCAGAACCTACTCT
ACAGTCTACAGAACCAGATTGTGCGTGGGGCGGAGTGGCAGAGTGCGCGC
GCAGGTGTACTTCGCCGGTCTTTTCAAATCTGGTTCTGTAGAGTAGGTTC
TGCAGGCGTTTTCGTGTTGGCAGACTTTTTCTTCCTGCCAATGTTGGCGG
ATTCCCGGGCGCCGACAGCGGCGCGAAAAGTATGCCGACAAGACACATCG
TAGCGAGTTGCCACTCACTGTCGACCAGTTACTTTCGCGTACACACTAGC
GGGTGAGAGCTACATATGCCAGGTGTTCGTGCTCTGCCGCCTGCCACACG
CTACGAAATTCTCCTCTGCGTAAATGTTAATGTTTTTAGCTCTCTCTCTC
TCTCTCCCCCCCCCCCCCACACACACATAATCGATTATCGGCCTACAACC
CTACCCCGCCCCGCCCCGCCGATCGGCTTCTTGCGGCCCTTGACACTACT
ACAACGCCCCGTCGTTTGGTGCGCTCTCGGCTGGTTCTTGGAAGGGTTCT
AACCGCTGCTGTTCACGCTGCCGCCGGGGGCGCCCATCTGCCCATCTGCC
TGCCTGCCTGCTGCCATCTCTCTTTCTCTCTCATCTCTCTCTCTCCCTCT
CCCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCGTTCTCTCTCTCT
CTCTCCCTCTCTCTCTCTCCCGCTCTCCCTCCCTCTCTCTCTTAATCTCT
CGCTCTCTCCCTCGCTCTCTCCCTCGCTCTCTCTCTCTGTGTGTCTCTCT
CTCGCTCTCTTTCCCTCTCTCTCTCTTTCTCTCTATCTTGCACTCGATTG
TACCCGTGCTGCAGGTGCTCTCGTGCTTCCTGGAGGAGTTCAACCGGCTG
CTTTCGGACGCCATCTTCGAGGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig728:641..2414-

>mRNA_L-elsbetiae_contig728.16144.1 ID=mRNA_L-elsbetiae_contig728.16144.1|Name=mRNA_L-elsbetiae_contig728.16144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig728:641..2414- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCACGGTCGCTACTTGAGCCCACTGGTGGGAGCGACGGTGGCGGCGG
CGGCGGCGGCAGCGGCGGCGGCGGCCTCGGTAAGGCATCTTTGACCACTG
GCGTCGGTGTTGATGCGCCTGTGGTGCGACGGCCCCGCAAAAGCCCATGG
GATGGCGGCGCCGGCGCCGGCGATCTACCTGCGGGGGGGTTGGCGGCGGA
AGAACCCGGCGCTGCTGCTGCTGCTGCTGCTGTGGCAGAGGACACTCGAA
CGGGGATGGAGATGCTCTCTGATCATATGCCACGGTCGCTACTTGAGCCC
ACTGGTGGGAGCGACGGTGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGG
CCTCGGTAAGGCATCTTTGACCACTGGCGTCGGTGTTGATGCGCCTGTGG
TGCGACGGCCCCGCAAAAGCCCATGGGATGGCGGCGCCGGCGCCGGCGAT
CTACCTGCGGGGGGGTTGGCGGCGGAAGAACCCGGCGCTGCTGCTGCTGC
TGCTGCTGTGGCAGAGGACACTCGAACGGGGATGGAGATGCTCTCTGATC
ATGTGCTCTCGTGCTTCCTGGAGGAGTTCAACCGGCTGCTTTCGGACGCC
ATCTTCGAGGCCGTGCTCTCGTGCTTCCTGGAGGAGTTCAACCGGCTGCT
TTCGGACGCCATCTTCGAGGCC
back to top