mRNA_L-elsbetiae_contig727.16138.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig727.16138.1
Unique NamemRNA_L-elsbetiae_contig727.16138.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig727.16138.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 133 bits (334), Expect = 1.350e-34
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1
Query:    1 DDGLELLDWDGECLTFNGEINKLATNVAYGRQMMGVHYRFDSHEGLLLGETVAIRKLHQELVGFPEDYFYEFRLFTGETIKLDHDGKFYID 273
            DDGL+L+D+ G CLTF GEINKLA NVA+GRQM+G+HYRFD  +GLLLGET+ +R LHQEL+ F E+  +EFRLFTGE IKL  DG F ID
Sbjct:  450 DDGLKLIDFRGSCLTFEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQELMTFAEESTFEFRLFTGEVIKLFQDGTFTID 540          
BLAST of mRNA_L-elsbetiae_contig727.16138.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 132 bits (333), Expect = 3.570e-34
Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = 1
Query:    1 DDGLELLDWDGECLTFNGEINKLATNVAYGRQMMGVHYRFDSHEGLLLGETVAIRKLHQELVGFPEDYFYEFRLFTGETIKLDHDGKFYID 273
            DDGLEL++++G CLT+ GEINKLA NVA+GRQM+G+HYRFD  +GLLLGET+ +R LHQEL+ F E+  +EFRLFTGE IKL  DG F ID
Sbjct:  569 DDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQELMTFAEEATFEFRLFTGEVIKLFQDGTFSID 659          
BLAST of mRNA_L-elsbetiae_contig727.16138.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.090e-30
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 DDGLELLDWDGECLTFNGEINKLATNVAYGRQMMGVHYRFDSHEGLLLGETVAIRKLHQELVGFPEDYFYEFRLFTGETIKLDHDGKFYID 273
            D+GL LLD+ G+CLTF GEINKLA NVA+GR M GVH+R DS +GLLLGE  A+R L QE V FPE+  YEF L +GETI+L+ DG F+I+
Sbjct:  508 DEGLTLLDFTGDCLTFEGEINKLAVNVAFGRNMCGVHWRIDSEQGLLLGEMAAVRILQQEAVTFPENAGYEFNLMSGETIRLETDGTFFIN 598          
BLAST of mRNA_L-elsbetiae_contig727.16138.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.430e-28
Identity = 58/95 (61.05%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 DDGLELLDWDGE----CLTFNGEINKLATNVAYGRQMMGVHYRFDSHEGLLLGETVAIRKLHQELVGFPEDYFYEFRLFTGETIKLDHDGKFYID 273
            D+GL LL + G+    CLTF GEINKLA NVA GR M+GVH+R DS  GLLLGET A+R L QE V +PE+  YEFRL +G+TI+L+ DG F+ID
Sbjct:  515 DEGLTLLPYTGDDGNNCLTFEGEINKLAVNVALGRNMLGVHWRIDSELGLLLGETAAVRILQQEAVAYPENAGYEFRLMSGKTIRLETDGTFFID 609          
BLAST of mRNA_L-elsbetiae_contig727.16138.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 103 bits (258), Expect = 5.910e-24
Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 DDGLELLDWDGECLTFNGEINKLATNVAYGRQMMGVHYRFDSHEGLLLGETVAIRKLHQELVGFPEDYFYEFRLFTGE 234
            DDGL LL +DG CLTF GEINK A NVA GR  MGVH+R D+ EGLLLGETVA+R L QEL GFPE   YEFR+ +GE
Sbjct:  497 DDGLTLLPFDG-CLTFEGEINKYAANVALGRNWMGVHWRMDAQEGLLLGETVAVRILMQELAGFPELEPYEFRVMSGE 573          
BLAST of mRNA_L-elsbetiae_contig727.16138.1 vs. uniprot
Match: A0A7C6J931_9FIRM (Vanadium-dependent haloperoxidase n=1 Tax=Peptococcaceae bacterium TaxID=2052179 RepID=A0A7C6J931_9FIRM)

HSP 1 Score: 77.8 bits (190), Expect = 9.190e-15
Identity = 44/82 (53.66%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    4 DGLELLDWDGECLTFNGEINKLATNVAYGRQMMGVHYRFDSHEGLLLGETVAIRKLHQELVGFPEDYF-YEFRLFTGETIKL 246
            DGL LL + GE LT  GEINKLATNV YGR   GVH+R D  EGL LGE VAI  L      + ED+  + F  F G TI +
Sbjct:  450 DGLTLLPYTGEPLTVGGEINKLATNVGYGRNAAGVHWRTDGSEGLKLGEAVAIGILQDYKRTYNEDFAGFSFTKFDGTTITI 531          
BLAST of mRNA_L-elsbetiae_contig727.16138.1 vs. uniprot
Match: A0A4Y7RBA7_9FIRM (PAP2 superfamily protein n=2 Tax=Pelotomaculum TaxID=191373 RepID=A0A4Y7RBA7_9FIRM)

HSP 1 Score: 77.0 bits (188), Expect = 1.740e-14
Identity = 41/80 (51.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    4 DGLELLDWDGECLTFNGEINKLATNVAYGRQMMGVHYRFDSHEGLLLGETVAIRKLHQELVGFPEDYF-YEFRLFTGETI 240
            DGL LL ++G  LT  GE+NKLA N+A GR   G+H+R D  EGL LGETVAIR L      + ED+  + F  F G TI
Sbjct:  506 DGLSLLPYEGPPLTVGGELNKLAVNIAMGRDFAGIHWRTDGSEGLKLGETVAIRILQDYRDTYNEDFIGFSFTKFDGTTI 585          
BLAST of mRNA_L-elsbetiae_contig727.16138.1 vs. uniprot
Match: UPI000CFCACA0 (vanadium-dependent haloperoxidase n=1 Tax=Vallitalea okinawensis TaxID=2078660 RepID=UPI000CFCACA0)

HSP 1 Score: 75.1 bits (183), Expect = 8.180e-14
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    4 DGLELLDWDGECLTFNGEINKLATNVAYGRQMMGVHYRFDSHEGLLLGETVAIRKLHQELVGFPEDYF-YEFRLFTGETI 240
            DGL LL + G+ LT  GE+NK+A+N+A GR + GVH+R DS EGL LGETVAI+ L      + ED+  +    F G TI
Sbjct:  457 DGLSLLPYSGQDLTIGGELNKMASNIAIGRDLAGVHWRSDSSEGLTLGETVAIQILQDYKDTYNEDFNGFTLTKFDGTTI 536          
BLAST of mRNA_L-elsbetiae_contig727.16138.1 vs. uniprot
Match: UPI00016C48B8 (vanadium-dependent haloperoxidase n=1 Tax=Gemmata obscuriglobus TaxID=114 RepID=UPI00016C48B8)

HSP 1 Score: 73.9 bits (180), Expect = 2.090e-13
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    1 DDGLELLDW---DGECLTFNGEINKLATNVAYGRQMMGVHYRFDSHEGLLLGETVAIRKLHQELVGFPEDYFYEFRLFTGETIKLDHDG 258
            DDG  L+ +   D   LT  GE++K+A N+A GR M GVH+R D  E +LLG+TVA+  LH++   + EDY +   L+ G  + +D  G
Sbjct:  455 DDGTALVPYTGPDAHRLTVGGELDKVAANIAIGRNMAGVHWRSDYRESVLLGQTVALCVLHRQARDYHEDYSFTVTLYDGTRVVVDKSG 543          
BLAST of mRNA_L-elsbetiae_contig727.16138.1 vs. uniprot
Match: A0A0P1GKM0_9RHOB (PAP2 superfamily protein n=1 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0P1GKM0_9RHOB)

HSP 1 Score: 72.4 bits (176), Expect = 2.300e-13
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   40 LTFNGEINKLATNVAYGRQMMGVHYRFDSHEGLLLGETVAIRKLHQELVGFPEDYFYEFRLFTGETIKLDHDGKFYID 273
            LT  GE+NKLA N+A GR M GVHY  D +E L LGE +A+  LH+++  + E      + F G+ I +  DGKF ++
Sbjct:  142 LTVEGELNKLAANIAIGRDMAGVHYYSDYYESLRLGERIAVGILHEQMSNYNEPVSMYLKSFDGDRITIKTDGKFDVE 219          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig727.16138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PRXV_ASCNO1.350e-3468.13Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
O82433_FUCDI3.570e-3467.03Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
B7ZGM6_9PHAE2.090e-3063.74Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
Q4LDE6_9PHAE3.430e-2861.05Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A3G3BM28_SACJA5.910e-2469.23Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
A0A7C6J931_9FIRM9.190e-1553.66Vanadium-dependent haloperoxidase n=1 Tax=Peptococ... [more]
A0A4Y7RBA7_9FIRM1.740e-1451.25PAP2 superfamily protein n=2 Tax=Pelotomaculum Tax... [more]
UPI000CFCACA08.180e-1450.00vanadium-dependent haloperoxidase n=1 Tax=Vallital... [more]
UPI00016C48B82.090e-1341.57vanadium-dependent haloperoxidase n=1 Tax=Gemmata ... [more]
A0A0P1GKM0_9RHOB2.300e-1343.59PAP2 superfamily protein n=1 Tax=Tropicibacter nap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig727contigL-elsbetiae_contig727:26895..28176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.9
Seed ortholog evalue4.2e-11
Seed eggNOG ortholog796606.BMMGA3_09005
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PAP2 superfamily
EggNOG OGs1USD9@1239,1ZDCF@1386,4HAYV@91061,COG0671@1,COG0671@2
COG Functional cat.I
Best tax levelBacillus
Best eggNOG OGNA|NA|NA
Exons3
Model size274
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig727.16138.1prot_L-elsbetiae_contig727.16138.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig727 26895..28175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816810.0942564-CDS-L-elsbetiae_contig727:26894..269861622816810.0942564-CDS-L-elsbetiae_contig727:26894..26986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig727 26895..26986 +
1691683830.5971222-CDS-L-elsbetiae_contig727:26894..269861691683830.5971222-CDS-L-elsbetiae_contig727:26894..26986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig727 26895..26986 +
1622816810.1101706-CDS-L-elsbetiae_contig727:27453..275381622816810.1101706-CDS-L-elsbetiae_contig727:27453..27538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig727 27454..27538 +
1691683830.6133428-CDS-L-elsbetiae_contig727:27453..275381691683830.6133428-CDS-L-elsbetiae_contig727:27453..27538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig727 27454..27538 +
1622816810.1226184-CDS-L-elsbetiae_contig727:28079..281751622816810.1226184-CDS-L-elsbetiae_contig727:28079..28175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig727 28080..28175 +
1691683830.6233163-CDS-L-elsbetiae_contig727:28079..281751691683830.6233163-CDS-L-elsbetiae_contig727:28079..28175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig727 28080..28175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig727.16138.1

>prot_L-elsbetiae_contig727.16138.1 ID=prot_L-elsbetiae_contig727.16138.1|Name=mRNA_L-elsbetiae_contig727.16138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
DDGLELLDWDGECLTFNGEINKLATNVAYGRQMMGVHYRFDSHEGLLLGE
TVAIRKLHQELVGFPEDYFYEFRLFTGETIKLDHDGKFYID
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mRNA from alignment at L-elsbetiae_contig727:26895..28176+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig727.16138.1 ID=mRNA_L-elsbetiae_contig727.16138.1|Name=mRNA_L-elsbetiae_contig727.16138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1282bp|location=Sequence derived from alignment at L-elsbetiae_contig727:26895..28176+ (Laminarionema elsbetiae ELsaHSoW15)
GACGACGGCTTGGAACTCCTGGACTGGGACGGCGAATGCCTAACGTTCAA TGGAGAAATCAACAAGCTCGCCACCAACGTCGCTTACGGCAGGTACACTA AACCGCGAATGCTCTCAACCAATTTTATTCTCAAGTAGTTTGTAGTCTTG AAACACAAGGTCGTACAGGAATAAGCCCTGGACGCGTCCCTGCCGGACAC CGTTGAGCAACGCGAACACCGCCGTCTGGATTGAATGTGTTGCGGTCTTC TGCTTAGATATGTATACATCCTTACAGGTGATGATCTTTGCCTATCTATG TAAGTACTGTAGGCGCAGAAAGTGTTTGGGTTGTTCTCGCTACGCTGGGT GGGAAAGAGTGAGAATGTACGAAATCCATACAATGGTACGGAGTAGTACT CGTTTGGCCTCACTTTCGAGCCTTTCGTTCGCTCAAGAGAATTTTTCCTC CCACAAATCGAAGAGTCTCCAGGCCAGCAGCAAGTCCACCCCCTTCCACC TCTTCTTTTGCCTGAAATCAACCGTCGTTTGGGGCCTTGTTCGCCAATAT TTGTTTTAGGCAAATGATGGGAGTGCACTACCGCTTCGACAGTCACGAGG GCCTCCTCCTTGGTGAAACTGTCGCCATCCGCAAGCTGCACCAGGTGAGA TATCCAAAACGAATGACCAAAAGGGAAACCAACGCGAAATCGCAAGAGAC ATCTAGATGGCGGGAAGATGCACGACAAACCAACGCAGGTACAGGAGACC CACTGTGAGAGAGTTACACCTCACACGAACAATACTCCCAGCCGAACAAC AGGCAGGGTACTCGAAAAGGCGACCTACCTCCACAGCAGGCTTGCTCGTT CTCCAGGAAGTTCAATTTAAACCTTAGCCTATGGAGCTTCGCCCGTCCTG TGCTTTCCCATGCTTGTAGGATGAAATATTCTTTCTCGTTTCCGGGTTGC TTTGATCGTACAAGGCGAGCGGTCTCTCCATCTTACTCGAGGCGCACGGT GCTCACAACAACGCGGCAGACAAACGTGCAGCAGAGCAAGGGCGTGGCTC CCCACCTTAAGTTGATGCGCGCTGTTTATTTACACAACCCTCCGGCCCCC TCAAGTTTTTCTTCTTGCTGTCTCACGGCTGTGTTGACGTCACGATTTCG CTCGATACTTGGTTTATGCGTGTATTTACGCGCAGGAGCTCGTGGGCTTC CCCGAGGACTACTTCTACGAGTTCCGCCTCTTCACCGGTGAAACCATCAA GCTAGACCACGACGGAAAATTCTACATTGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig727:26895..28176+

>mRNA_L-elsbetiae_contig727.16138.1 ID=mRNA_L-elsbetiae_contig727.16138.1|Name=mRNA_L-elsbetiae_contig727.16138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig727:26895..28176+ (Laminarionema elsbetiae ELsaHSoW15)
GACGACGGCTTGGAACTCCTGGACTGGGACGGCGAATGCCTAACGTTCAA
TGGAGAAATCAACAAGCTCGCCACCAACGTCGCTTACGGCAGGACGACGG
CTTGGAACTCCTGGACTGGGACGGCGAATGCCTAACGTTCAATGGAGAAA
TCAACAAGCTCGCCACCAACGTCGCTTACGGCAGGCAAATGATGGGAGTG
CACTACCGCTTCGACAGTCACGAGGGCCTCCTCCTTGGTGAAACTGTCGC
CATCCGCAAGCTGCACCAGGCAAATGATGGGAGTGCACTACCGCTTCGAC
AGTCACGAGGGCCTCCTCCTTGGTGAAACTGTCGCCATCCGCAAGCTGCA
CCAGGAGCTCGTGGGCTTCCCCGAGGACTACTTCTACGAGTTCCGCCTCT
TCACCGGTGAAACCATCAAGCTAGACCACGACGGAAAATTCTACATTGAC
GAGCTCGTGGGCTTCCCCGAGGACTACTTCTACGAGTTCCGCCTCTTCAC
CGGTGAAACCATCAAGCTAGACCACGACGGAAAATTCTACATTGAC
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