mRNA_L-elsbetiae_contig7262.16133.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7262.16133.1
Unique NamemRNA_L-elsbetiae_contig7262.16133.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7262.16133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7262contigL-elsbetiae_contig7262:8698..9988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size281
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7262.16133.1prot_L-elsbetiae_contig7262.16133.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7262 8699..9988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816809.5722742-CDS-L-elsbetiae_contig7262:8698..87271622816809.5722742-CDS-L-elsbetiae_contig7262:8698..8727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7262 8699..8727 -
1691683830.1516266-CDS-L-elsbetiae_contig7262:8698..87271691683830.1516266-CDS-L-elsbetiae_contig7262:8698..8727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7262 8699..8727 -
1622816809.586469-CDS-L-elsbetiae_contig7262:9429..96101622816809.586469-CDS-L-elsbetiae_contig7262:9429..9610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7262 9430..9610 -
1691683830.1643543-CDS-L-elsbetiae_contig7262:9429..96101691683830.1643543-CDS-L-elsbetiae_contig7262:9429..9610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7262 9430..9610 -
1622816809.5973458-CDS-L-elsbetiae_contig7262:9919..99881622816809.5973458-CDS-L-elsbetiae_contig7262:9919..9988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7262 9920..9988 -
1691683830.1796823-CDS-L-elsbetiae_contig7262:9919..99881691683830.1796823-CDS-L-elsbetiae_contig7262:9919..9988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7262 9920..9988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7262.16133.1

>prot_L-elsbetiae_contig7262.16133.1 ID=prot_L-elsbetiae_contig7262.16133.1|Name=mRNA_L-elsbetiae_contig7262.16133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
NDGLDDSINLIDAETRELTVVGEVFVSKFTELQQCVVDSSPTPAPVDDTT
TPPAPTPVAPTPAPVDDTTTPPAPTPVAPTPAPVDDSIDDSDG
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mRNA from alignment at L-elsbetiae_contig7262:8698..9988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7262.16133.1 ID=mRNA_L-elsbetiae_contig7262.16133.1|Name=mRNA_L-elsbetiae_contig7262.16133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1291bp|location=Sequence derived from alignment at L-elsbetiae_contig7262:8698..9988- (Laminarionema elsbetiae ELsaHSoW15)
AACGACGGCTTGGATGACTCCATCAACTTGATCGATGCCGAGACAAGAGA
GCTCACGGTAGTCGGAGAAGTAAGTCACCCCACGGCTATAGTTATGGTTT
ACGTCAGCGTGTATCGAAGCCGAAAACCGAAGCAACACTCCAACATCGCG
TCCTGACCGAACCCCATGAAATAGCCGCTCGTGTTAACACATCTCCGGAG
ATCTCCAAGTATGCGCTATCCTTGGTTTCACTCCAAGAGTAATACAGAAT
ACCCCCCCCCCTCTGTATCGCGAAGGAATTCAGGAATACAGGTCTTCGGA
TTCGACTGTGCCAGAATACAAACCCATCGGTGCCCGCACTAATACGCCTC
CTTTCGCTTTCCGTGCTATGTATAACAGGTGTTCGTGTCAAAGTTCACCG
AACTCCAGCAATGCGTGGTGGACAGTAGTCCCACTCCGGCACCAGTTGAC
GACACCACCACTCCACCTGCGCCAACCCCGGTCGCCCCGACCCCGGCACC
AGTTGACGACACCACCACTCCACCTGCGCCAACTCCGGTTGCCCCGACCC
CGGCACCAGGTGACGACAGCACTAATCCACCTACGCTAACCCCGGTCGCC
CCGACCCCGGCACCACTTGACCACAGCACTAATCTGCCTGCACCTATCCC
GGTCGCCCTGACCCTGGCACCACTTGACCACAGCACCACTCCATCTGCGT
CAACCCCGGTCGCCCCGACCCCGGCACCAGTTGACGACAGCACTAATTCA
CCTACGCCAACCCCTGTCGCCCCGATCCCGGCGCCAGTTGACGACAGCAC
TAATCCGCCTACGCCAACCCCGGTCACCCCGACCCCGGCCCGGCACCAGT
TGACGACAGAACCAATAATCCGCCTGCATCAACACTGGTCGCCCCGACCC
CGGCACCAGTTGACGACAGCACTAGTCCGCCTGCGCCAACTCTGGTCACC
CCGACCCCAGCGACAGTTGACAACAGCACTAATCCGCCTACGCTAACCTG
CGCCAACCCCGGTTGCCCCGATCCCGGCACTAGTTGACGACAACACCAAT
CCGCCTGCAATAACCCCGGTCGCCCCGACCCCACCACCAGTTGACGGCAG
CACTAATCCGCCTGCGCCACCTCCGGTCGCCCCGACCCCGGCGCCAGTTG
ACGACAGAACCAATCCGCCTGCATCAACCCCAGTCGCCCCGACCCCGGCA
CCAGTTAACAACAGCACTAATCCGCCTCCAACAACCCCGGTCGCCCCGAC
CCCACCACCAGTTGACGACAGCATCGACGATAGCGATGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7262:8698..9988-

>mRNA_L-elsbetiae_contig7262.16133.1 ID=mRNA_L-elsbetiae_contig7262.16133.1|Name=mRNA_L-elsbetiae_contig7262.16133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig7262:8698..9988- (Laminarionema elsbetiae ELsaHSoW15)
AACGACGGCTTGGATGACTCCATCAACTTGATCGATGCCGAGACAAGAGA
GCTCACGGTAGTCGGAGAAAACGACGGCTTGGATGACTCCATCAACTTGA
TCGATGCCGAGACAAGAGAGCTCACGGTAGTCGGAGAAGTGTTCGTGTCA
AAGTTCACCGAACTCCAGCAATGCGTGGTGGACAGTAGTCCCACTCCGGC
ACCAGTTGACGACACCACCACTCCACCTGCGCCAACCCCGGTCGCCCCGA
CCCCGGCACCAGTTGACGACACCACCACTCCACCTGCGCCAACTCCGGTT
GCCCCGACCCCGGCACCAGGTGTTCGTGTCAAAGTTCACCGAACTCCAGC
AATGCGTGGTGGACAGTAGTCCCACTCCGGCACCAGTTGACGACACCACC
ACTCCACCTGCGCCAACCCCGGTCGCCCCGACCCCGGCACCAGTTGACGA
CACCACCACTCCACCTGCGCCAACTCCGGTTGCCCCGACCCCGGCACCAG
TTGACGACAGCATCGACGATAGCGATGGATTGACGACAGCATCGACGATA
GCGATGGA
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