mRNA_L-elsbetiae_contig7262.16132.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7262.16132.1
Unique NamemRNA_L-elsbetiae_contig7262.16132.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7262.16132.1 vs. uniprot
Match: A0A4R0RUG8_9APHY (Uncharacterized protein n=1 Tax=Steccherinum ochraceum TaxID=92696 RepID=A0A4R0RUG8_9APHY)

HSP 1 Score: 60.1 bits (144), Expect = 1.260e-8
Identity = 37/88 (42.05%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:    1 GNSQSYA--DATGTTCEGDRTNFDGNLPGDDELNIMTGWHCASQDQCGFFRGVGMRGWMGGEDGTKVMIFEVDMPHCETCERNRPAVW 258
            GNSQSY+  D T      +   +  NLPG  E+NI+TG  CA     GF RG    GW     G+K  IFE DMP       N PA+W
Sbjct:  145 GNSQSYSNGDFTDAAASPNADTYSANLPGTQEVNIVTGTSCADVPCDGFARGTASHGW----SGSKAFIFEFDMP--SDGSSNPPAIW 226
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BLAST of mRNA_L-elsbetiae_contig7262.16132.1 vs. uniprot
Match: A0A4S4LVY0_9APHY (Uncharacterized protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4LVY0_9APHY)

HSP 1 Score: 56.2 bits (134), Expect = 2.910e-7
Identity = 34/88 (38.64%), Postives = 45/88 (51.14%), Query Frame = 1 
Query:    1 GNSQSYADA--TGTTCEGDRTNFDGNLPGDDELNIMTGWHCASQDQCGFFRGVGMRGWMGGEDGTKVMIFEVDMPHCETCERNRPAVW 258
            G SQ+Y+D   TG     +   +  NLPG +E+NI+T   CA     GF RG    GW     G+K  +FE +MP   T   N PA+W
Sbjct:  146 GASQAYSDGAFTGAAASANADIYGANLPGTNEVNIVTSQTCADSPCDGFARGTASHGWA----GSKAFVFEFEMPQDGTS--NPPAIW 227
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7262.16132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4R0RUG8_9APHY1.260e-842.05Uncharacterized protein n=1 Tax=Steccherinum ochra... [more]
A0A4S4LVY0_9APHY2.910e-738.64Uncharacterized protein n=1 Tax=Antrodiella citrin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7262contigL-elsbetiae_contig7262:5314..6649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue6.2e-12
Seed eggNOG ortholog2880.D7FKU0
Preferred nameTOS1
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0003843,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005975,GO:0005976,GO:0006073,GO:0006074,GO:0006075,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009272,GO:0009277,GO:0009987,GO:0010383,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0030312,GO:0033692,GO:0034406,GO:0034407,GO:0034410,GO:0034411,GO:0034637,GO:0034645,GO:0035251,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0051273,GO:0051274,GO:0051278,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0071966,GO:0071969,GO:0071970,GO:1901576
EggNOG free text desc.Putative TOS1-like glycosyl hydrolase (DUF2401)
EggNOG OGs2CBPA@1,2QSI7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size263
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7262.16132.1prot_L-elsbetiae_contig7262.16132.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7262 5315..6649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816809.6355903-CDS-L-elsbetiae_contig7262:5314..54381622816809.6355903-CDS-L-elsbetiae_contig7262:5314..5438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7262 5315..5438 -
1691683830.197172-CDS-L-elsbetiae_contig7262:5314..54381691683830.197172-CDS-L-elsbetiae_contig7262:5314..5438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7262 5315..5438 -
1622816809.6459095-CDS-L-elsbetiae_contig7262:6124..62311622816809.6459095-CDS-L-elsbetiae_contig7262:6124..6231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7262 6125..6231 -
1691683830.2212293-CDS-L-elsbetiae_contig7262:6124..62311691683830.2212293-CDS-L-elsbetiae_contig7262:6124..6231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7262 6125..6231 -
1622816809.656603-CDS-L-elsbetiae_contig7262:6619..66491622816809.656603-CDS-L-elsbetiae_contig7262:6619..6649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7262 6620..6649 -
1691683830.238137-CDS-L-elsbetiae_contig7262:6619..66491691683830.238137-CDS-L-elsbetiae_contig7262:6619..6649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7262 6620..6649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7262.16132.1

>prot_L-elsbetiae_contig7262.16132.1 ID=prot_L-elsbetiae_contig7262.16132.1|Name=mRNA_L-elsbetiae_contig7262.16132.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
GNSQSYADATGTTCEGDRTNFDGNLPGDDELNIMTGWHCASQDQCGFFRG
VGMRGWMGGEDGTKVMIFEVDMPHCETCERNRPAVWA
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mRNA from alignment at L-elsbetiae_contig7262:5314..6649-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7262.16132.1 ID=mRNA_L-elsbetiae_contig7262.16132.1|Name=mRNA_L-elsbetiae_contig7262.16132.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1336bp|location=Sequence derived from alignment at L-elsbetiae_contig7262:5314..6649- (Laminarionema elsbetiae ELsaHSoW15)
GGCAATAGCCAGAGCTACGCGGATGCCACGGTGGGTCGGGGCTTTGTGCA
CACCAAGCGGCGGCTTTGAACGAGAAATTATGTTTCTCTCCATTGAATCC
TCCTACGTGTGCAATTAGCTTTCCCTGAAAGTCCTACGGAGGTTTTACCC
CTGTTAAGCCTGCATTGCATTTTATCCCTTACAGCCCCGTTAATCAGTCA
AGACCTCCGCACCTGCCTGGCATCCCTCTTTAGTAGTTGAAGACGGTGTG
GATCGCGGCGAGGGTGTATATACCCATATATGTTCAGTGTACAATATTCG
AAAAGAGTAAGGCGTTTGTCATGCATACGCAATTCTCTCTCTTAATGTAA
TGTCCTTTGAGATATGTATGCACATCCATCGCACCTGTGAAAATCGTTTC
CACGCACGCACGTGGCAGGGAACGACGTGCGAAGGCGACAGGACAAACTT
CGATGGAAACCTTCCCGGCGACGACGAGCTGAACATCATGACTGGCTGGC
ACTGTGCTTCGCAAGACCAATGCGGGTATGTATCTACAGTATCTGTCTAT
CTATCTATGGTTGTGTATAGACGTGTGTACATAAAAAAAGAAATCACGGA
ACGCTGGCGACCAACACGCGAACGGCGAAATCGTGACGTCACGTGCAACG
CAATTTAACCACATACTATTGGACTCTGTATCGTCCGCATTCGAGGCATC
GCTGAGCGTGTTCGCAAGGAGTTTCCGTACAAGGCAGAAAACCAGGAAGG
TATGACAGATACGCAAGTAGATTTTACACACACACACACTGGAGCAGTTT
TCAGCAGCCTGCAGCCTGCAGGCAGAGCTATTGTCAGGCTTCCAGTCGCC
TATTGCACCTCCATCCCTCCTGGTGCTTGGACACCAATACAAAAACAAAA
ACTAAGGAAGCAGCCTAGGGTAACCGACAGGCCCTAGGCCATCCATCTAT
TTCATTCACACACACACACACACACAAAATAGGGAGTCCGCAGCAGGCAG
TATTCGTTCACCCAAAAGTCAGGCATGAAGGAGTGTGGGGTTGTAGTCTA
TTGGTTGCCTTGCATAAAGCTCGGTAAGATCTATATCTGTAGGCTACGTC
GTGAGCGGGCCTCTCAAAACGCAGTGTGAATGGCTGCGCATGCTGTGGTG
GCCTGTGTAACATCCAAATCTCTAATATTGTCGGTGTCCCTACCTCCCGG
GTCCTCTGCAGATTCTTCCGTGGCGTCGGAATGCGCGGGTGGATGGGAGG
GGAGGACGGCACCAAGGTCATGATCTTCGAGGTAGATATGCCGCACTGCG
AAACGTGCGAGCGGAACCGTCCCGCTGTATGGGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7262:5314..6649-

>mRNA_L-elsbetiae_contig7262.16132.1 ID=mRNA_L-elsbetiae_contig7262.16132.1|Name=mRNA_L-elsbetiae_contig7262.16132.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig7262:5314..6649- (Laminarionema elsbetiae ELsaHSoW15)
GGCAATAGCCAGAGCTACGCGGATGCCACGGGCAATAGCCAGAGCTACGC
GGATGCCACGGGAACGACGTGCGAAGGCGACAGGACAAACTTCGATGGAA
ACCTTCCCGGCGACGACGAGCTGAACATCATGACTGGCTGGCACTGTGCT
TCGCAAGACCAATGCGGGGAACGACGTGCGAAGGCGACAGGACAAACTTC
GATGGAAACCTTCCCGGCGACGACGAGCTGAACATCATGACTGGCTGGCA
CTGTGCTTCGCAAGACCAATGCGGATTCTTCCGTGGCGTCGGAATGCGCG
GGTGGATGGGAGGGGAGGACGGCACCAAGGTCATGATCTTCGAGGTAGAT
ATGCCGCACTGCGAAACGTGCGAGCGGAACCGTCCCGCTGTATGGGCAAT
TCTTCCGTGGCGTCGGAATGCGCGGGTGGATGGGAGGGGAGGACGGCACC
AAGGTCATGATCTTCGAGGTAGATATGCCGCACTGCGAAACGTGCGAGCG
GAACCGTCCCGCTGTATGGGCA
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