mRNA_L-elsbetiae_contig7257.16122.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7257.16122.1 vs. uniprot
Match: A0A6H5KZ19_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ19_9PHAE) HSP 1 Score: 596 bits (1537), Expect = 1.580e-204 Identity = 322/528 (60.98%), Postives = 377/528 (71.40%), Query Frame = 2 Query: 2 CLKSVVRAAAAYQRRSGNIRGSGPACPLCRETFDPSAVTTDSQTFEAMLQATVPCPNGDECTSQFCPLRWKKHNEECPSTVVPCTHHAVGCGWKGARRGLSAHVDCCAYEQIKGLVPRVSASLKKVHTQVHHLEARLLSQNAALANTRAL-ALQRQPGSVFPAVYALLWRPPDWRRYNYPNPGV-VLSNVAFICLAPVLFLGLWGGGTFGGGSGLAAEERAACLAGVAILTFVLLLEYDNASPWHET------RGLAIGRVLLENTARLVVFCAINGLPPWKRLPAVVLLLAPLFYPPVVESLHRFQVEVKNAQTQAQRAHAQPPLPPFEPVVPSVIKVHTTVVNGVVRAVAMLVCGLEAVLVGEALAKLSVTLAAATSAGPAVDEALEYAWVSMSAGCAPGDLERLRTRHGRIFREMRSPLPTPTDRRSRRVMAVSCVFSVAACVSHYRDSLHTIGFGRLLLLVLGVAHFRWELQVERLVMATFKLTRTGRDP------ARCLLLSRLFLLWTVLGSLFFVLTILTS 1543 CLKSVVRAAA QRRSGN LCRE F P V ++ FE ML+ATV C NGD C +QFCPLRWKKH EECPS VV C HH VGC W+GARR LS HV+ CAYE+IKGL+PRVSASLK++HTQVH LEAR+++QNAA+ANTRAL A QRQ GSVFPAVYALLWRPP+WR Y P PG VLSNV ICLAP+LFL L G G FGGG GL EERA CL GVAIL FV LLE+DN SP+HE +GLAIG LLE TAR +V+ A+ GLP WKR PA++ LLAPLFYP VV+++HRF+V+VKNA QAQRA AQPPLPP EPV +K H TVVNGVVR ML+ LVGE LAKL V + +A +D LE+ W+ MS+G A D RL+ RH IFR++R+PLP TDR +RR++A CV A V+ +RD L +G+ RLLL VL AHFRWEL V R+VM + + TRT +DP AR LL SRL LLW V+GS FF+L +LTS Sbjct: 54 CLKSVVRAAAHRQRRSGNTGPXXXXXXLCREPFTPEVVQPSARIFEEMLKATVTCRNGD-CAAQFCPLRWKKHQEECPSAVVQCMHHLVGCVWEGARRDLSLHVEGCAYEKIKGLIPRVSASLKQIHTQVHQLEARVMAQNAAVANTRALLAHQRQAGSVFPAVYALLWRPPNWRLYQSPRPGGGVLSNVTLICLAPILFLALCGAGVFGGGGGLVVEERAVCLVGVAILGFVALLEHDNESPYHELQTPSLLKGLAIGEFLLEGTARSMVYFALKGLPDWKRTPALLFLLAPLFYPTVVQAVHRFEVQVKNAHNQAQRARAQPPLPPVEPVA---VKTHGTVVNGVVRGTTMLLMNPVPALVGEVLAKLGVFVVSAALGPEKLDAFLEHVWLVMSSGIALDDKARLKKRHDSIFRDLRTPLPNMTDRTTRRLIAAVCVCLFAIIVAFFRDILQMVGYSRLLLSVLDSAHFRWELHVGRVVMGSLQQTRTNQDPNFARTRARDLLRSRLLLLWVVVGSSFFLLFMLTS 577 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7257.16122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7257.16122.1 >prot_L-elsbetiae_contig7257.16122.1 ID=prot_L-elsbetiae_contig7257.16122.1|Name=mRNA_L-elsbetiae_contig7257.16122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=468bp MLQATVPCPNGDECTSQFCPLRWKKHNEECPSTVVPCTHHAVGCGWKGARback to top mRNA from alignment at L-elsbetiae_contig7257:886..7401+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7257.16122.1 ID=mRNA_L-elsbetiae_contig7257.16122.1|Name=mRNA_L-elsbetiae_contig7257.16122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6516bp|location=Sequence derived from alignment at L-elsbetiae_contig7257:886..7401+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7257:886..7401+ >mRNA_L-elsbetiae_contig7257.16122.1 ID=mRNA_L-elsbetiae_contig7257.16122.1|Name=mRNA_L-elsbetiae_contig7257.16122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2808bp|location=Sequence derived from alignment at L-elsbetiae_contig7257:886..7401+ (Laminarionema elsbetiae ELsaHSoW15)back to top |