mRNA_L-elsbetiae_contig7255.16121.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7255.16121.1
Unique NamemRNA_L-elsbetiae_contig7255.16121.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7255.16121.1 vs. uniprot
Match: D7G4L9_ECTSI (Cellulosome anchoring protein, cohesin region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L9_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 6.960e-25
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 2 
Query:  776 VVADEVAGDEIDCYSLLSEEMKVYLEQEDKGLFYDEDCTGTHCNMFGVAQDCRSCYMDCTVCE---EEPGSV---MCPSEFPMISGEAQSCASACGIEDATA-NRRLRG 1081
            VVADE   +E+DC SLLS EM   L Q+DKG++Y++DC G HCNMFG+  DCR+CYMDC  CE   E+ G+    MCPSEFP I G+ Q+C S C     T   RRLRG
Sbjct: 2253 VVADEEV-EEVDCVSLLSPEMSTELAQKDKGVYYEKDCQGLHCNMFGIGWDCRACYMDCAACEGDQEDLGTADLAMCPSEFPRIGGQTQTCISTCSATRKTRYRRRLRG 2360
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BLAST of mRNA_L-elsbetiae_contig7255.16121.1 vs. uniprot
Match: A0A6H5KK76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK76_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 6.050e-15
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 2 
Query:  776 VVADEVAGDEIDCYSLLSEEMKVYLEQEDKGLFYDEDCTGTHCNMFGVAQDCRSCYMDCTVCE 964
            VVADE   +E+DC SLLS EM + L Q+DKG++Y++DC G HCNMFG+  DCR+CYMDC  CE
Sbjct: 3572 VVADEDE-EEVDCVSLLSPEMLMELAQKDKGVYYEKDCQGLHCNMFGIGWDCRACYMDCAACE 3633
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7255.16121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4L9_ECTSI6.960e-2555.05Cellulosome anchoring protein, cohesin region n=1 ... [more]
A0A6H5KK76_9PHAE6.050e-1561.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7255contigL-elsbetiae_contig7255:7722..10051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncellulosome anchoring protein, cohesin region
Ec32 orthologEc-07_000100.1
Exons3
Model size1081
Cds size1053
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7255.16121.1prot_L-elsbetiae_contig7255.16121.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7255 7722..10023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.486123-CDS-L-elsbetiae_contig7255:7721..78241622816808.486123-CDS-L-elsbetiae_contig7255:7721..7824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 7722..7824 -
1691683829.270682-CDS-L-elsbetiae_contig7255:7721..78241691683829.270682-CDS-L-elsbetiae_contig7255:7721..7824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 7722..7824 -
1622816808.498001-CDS-L-elsbetiae_contig7255:8682..88191622816808.498001-CDS-L-elsbetiae_contig7255:8682..8819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 8683..8819 -
1691683829.2821794-CDS-L-elsbetiae_contig7255:8682..88191691683829.2821794-CDS-L-elsbetiae_contig7255:8682..8819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 8683..8819 -
1622816808.507921-CDS-L-elsbetiae_contig7255:9210..100231622816808.507921-CDS-L-elsbetiae_contig7255:9210..10023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 9211..10023 -
1691683829.2915852-CDS-L-elsbetiae_contig7255:9210..100231691683829.2915852-CDS-L-elsbetiae_contig7255:9210..10023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7255 9211..10023 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.5178745-UTR-L-elsbetiae_contig7255:10023..100511622816808.5178745-UTR-L-elsbetiae_contig7255:10023..10051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7255 10024..10051 -
1691683829.3017082-UTR-L-elsbetiae_contig7255:10023..100511691683829.3017082-UTR-L-elsbetiae_contig7255:10023..10051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7255 10024..10051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7255.16121.1

>prot_L-elsbetiae_contig7255.16121.1 ID=prot_L-elsbetiae_contig7255.16121.1|Name=mRNA_L-elsbetiae_contig7255.16121.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=351bp
MPMPTTPGATPSAPSPTGTPAPADTVAPDPPLSPDSMPTPTTPGATPSAP
SPSPPTAEGQPTSVPTSAPTPSPSQPTTPGDTPSSPSSPAATPTPPTAPS
GTEPPSVRIDPDITPDITPDITPPSPPSVPTTPAPQDSPAGTEPPATAPA
PTVPAPSPPSPAATLAPQTSPAGTGEEELGTAAPATEAFMCPPPVPCVCD
APTPAPTSEDSMIEPSSSFSFSFDPLPQPTSASASSEPAVGEFESSGFEV
VADEVAGDEIDCYSLLSEEMKVYLEQEDKGLFYDEDCTGTHCNMFGVAQD
CRSCYMDCTVCEEEPGSVMCPSEFPMISGEAQSCASACGIEDATANRRLR
G
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mRNA from alignment at L-elsbetiae_contig7255:7722..10051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7255.16121.1 ID=mRNA_L-elsbetiae_contig7255.16121.1|Name=mRNA_L-elsbetiae_contig7255.16121.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2330bp|location=Sequence derived from alignment at L-elsbetiae_contig7255:7722..10051- (Laminarionema elsbetiae ELsaHSoW15)
CCCGGGCCCGTCTCCATCCCCCGTGAGCATGCCGATGCCCACCACACCTG
GTGCTACTCCGAGCGCGCCATCGCCTACCGGGACACCCGCCCCGGCTGAC
ACTGTGGCCCCGGACCCGCCTCTATCCCCCGACAGCATGCCGACGCCCAC
CACACCTGGTGCTACTCCGAGCGCGCCCTCACCCTCCCCCCCTACCGCGG
AGGGGCAACCGACTTCGGTCCCTACCTCTGCCCCCACGCCGTCGCCTTCT
CAACCGACCACCCCCGGTGATACTCCGTCGTCTCCTTCAAGCCCCGCCGC
AACTCCTACGCCTCCGACGGCCCCTTCCGGAACAGAGCCACCGTCGGTGC
GGATTGATCCCGATATCACGCCCGACATCACGCCCGATATCACGCCGCCG
TCTCCTCCAAGCGTCCCCACTACCCCGGCACCTCAGGATTCGCCTGCCGG
AACAGAGCCGCCAGCAACGGCGCCCGCCCCGACCGTCCCCGCGCCATCTC
CTCCAAGCCCCGCAGCCACCCTGGCGCCTCAGACCTCCCCTGCCGGAACG
GGCGAGGAAGAGCTCGGAACCGCGGCACCCGCGACGGAGGCGTTTATGTG
CCCGCCGCCGGTTCCCTGCGTTTGTGATGCGCCCACACCGGCGCCAACGA
GCGAGGATTCGATGATAGAGCCTTCGTCCTCTTTCTCGTTCTCCTTCGAC
CCTCTGCCACAGCCCACCTCTGCCTCCGCATCGTCGGAACCGGCCGTGGG
GGAGTTTGAGTCGTCCGGGTTCGAAGTGGTGGCTGACGAAGTGGCGGGTG
ACGAGATCGACTGCTACAGCCTTCTCTCCGAGGAAATGAAGGTGGCGTGA
CGAAAAAATAATAAACCATACCGAAATCGGCCTCCCTGCGTCGGGTTTAT
TGACCCGTTGTTGTTTGCTTTATTTGGCTGGTTGGTTAGTTGGCTTTACG
CCACGAAGGAGAAAGAAGGAACCGGTTTTTGTTGAGGTGGCGCGGGCGCA
GCGAACTGAAGCCAGTCTACCGTTACACTTTGGTGCTCTTTGGTAGGTTT
TGTGTATCTGGGTTCGTTCTTGTTGGCAAGACGGACACCCTCCGGGCAAG
GGCGGCAGAGGTGGCGGCGACCTTGCCGTCGAAAGCGCTGTATGCAGTGT
TCGATGCCAGGGTACGGTAGCCTTCTTGCTTCGCAAAGCACGGCGGCGAC
AATAACAATCCCTCTTTTATTCTTTGCATCAGGTGTACCTGGAACAGGAG
GACAAGGGGCTGTTCTACGACGAGGACTGCACTGGCACCCATTGCAACAT
GTTCGGCGTAGCCCAGGACTGCCGTAGCTGCTACATGGACTGCACCGTCT
GCGAGGAGGAACCGGGATCGTAAGTGGGGGGGTCGTGAATCTCAGGGGTG
CTTCAAACCTTTGCTTGCCCTCTGATCGATGGGCTAATGACGGCGACGGT
GTCCCTTTGGAGAGTATCATTTGTACAACATACATACGTACTATTTGTAG
TCTCCAGTTCGCTTCGCTTCATACGATTCACGAGGTACAGAGCTGGAACA
CGGATCTACATAAGCAACCTATTTCCAGGACGTTCCCGTTCATCAAAGCT
TTGGCCTATTGTAGCCTAGTTGTTTTTTTTATTTTTTTTTCCAGTGCTCG
ACGGGCTGCTTGCCACGAGAGCATCTTGCCGGAGTACTGAATCGTGGTGA
TTAGGAGTTTTAACACCTACCTGGTGATTCTGATTATTGCAGGTCCTTTC
TCGATGGCGGTTAAAGTAACGTGTATCCTGTGGGTGTTTTTTCCAGAACG
GTTTCTTTCTCCACGAAACGATGCAATATGATGGAGACGATTACAAAACA
TTAACGGGTTGGTTCTTCGTCGTCCACAGCTCCTCTGACCAGAGCTCCTC
TGGCCAGCGGAGGACAGCCAGCCCCCACCTCTTGCCTTCGACTCTCTTAC
CACCGATCGATCGACCCCGCAACTTGCCTGCCTGCCTGGAAAACAAAACC
CCTTCGTTTAGATGGACCAGCCCGAGCGGAAGAGAAAGATTTCACCCCCG
GCTCTGTAGGTTAGATTGTAATCTAGTGGTTTTGTAACCCTCATCGCCAC
GTAATGGAACCTCTTCAACTATCCCGCACGTATACGCCTCTCAATCAATG
GCCACGCCGTCGCCTCCGTTCCGTCATTATCCCCTCCGTCTCTCTCCCTC
TCCCTTCACAACCCTGGCATCTTTCAGGGTTATGTGCCCCTCAGAGTTCC
CCATGATAAGCGGCGAGGCCCAGTCGTGCGCCTCGGCTTGCGGCATCGAG
GACGCCACCGCGAATCGCCGTCTCCGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7255:7722..10051-

>mRNA_L-elsbetiae_contig7255.16121.1 ID=mRNA_L-elsbetiae_contig7255.16121.1|Name=mRNA_L-elsbetiae_contig7255.16121.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2106bp|location=Sequence derived from alignment at L-elsbetiae_contig7255:7722..10051- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGATGCCCACCACACCTGGTGCTACTCCGAGCGCGCCATCGCCTAC
CGGGACACCCGCCCCGGCTGACACTGTGGCCCCGGACCCGCCTCTATCCC
CCGACAGCATGCCGACGCCCACCACACCTGGTGCTACTCCGAGCGCGCCC
TCACCCTCCCCCCCTACCGCGGAGGGGCAACCGACTTCGGTCCCTACCTC
TGCCCCCACGCCGTCGCCTTCTCAACCGACCACCCCCGGTGATACTCCGT
CGTCTCCTTCAAGCCCCGCCGCAACTCCTACGCCTCCGACGGCCCCTTCC
GGAACAGAGCCACCGTCGGTGCGGATTGATCCCGATATCACGCCCGACAT
CACGCCCGATATCACGCCGCCGTCTCCTCCAAGCGTCCCCACTACCCCGG
CACCTCAGGATTCGCCTGCCGGAACAGAGCCGCCAGCAACGGCGCCCGCC
CCGACCGTCCCCGCGCCATCTCCTCCAAGCCCCGCAGCCACCCTGGCGCC
TCAGACCTCCCCTGCCGGAACGGGCGAGGAAGAGCTCGGAACCGCGGCAC
CCGCGACGGAGGCGTTTATGTGCCCGCCGCCGGTTCCCTGCGTTTGTGAT
GCGCCCACACCGGCGCCAACGAGCGAGGATTCGATGATAGAGCCTTCGTC
CTCTTTCTCGTTCTCCTTCGACCCTCTGCCACAGCCCACCTCTGCCTCCG
CATCGTCGGAACCGGCCGTGGGGGAGTTTGAGTCGTCCGGGTTCGAAGTG
GTGGCTGACGAAGTGGCGGGTGACGAGATCGACTGCTACAGCCTTCTCTC
CGAGGAAATGAAGATGCCGATGCCCACCACACCTGGTGCTACTCCGAGCG
CGCCATCGCCTACCGGGACACCCGCCCCGGCTGACACTGTGGCCCCGGAC
CCGCCTCTATCCCCCGACAGCATGCCGACGCCCACCACACCTGGTGCTAC
TCCGAGCGCGCCCTCACCCTCCCCCCCTACCGCGGAGGGGCAACCGACTT
CGGTCCCTACCTCTGCCCCCACGCCGTCGCCTTCTCAACCGACCACCCCC
GGTGATACTCCGTCGTCTCCTTCAAGCCCCGCCGCAACTCCTACGCCTCC
GACGGCCCCTTCCGGAACAGAGCCACCGTCGGTGCGGATTGATCCCGATA
TCACGCCCGACATCACGCCCGATATCACGCCGCCGTCTCCTCCAAGCGTC
CCCACTACCCCGGCACCTCAGGATTCGCCTGCCGGAACAGAGCCGCCAGC
AACGGCGCCCGCCCCGACCGTCCCCGCGCCATCTCCTCCAAGCCCCGCAG
CCACCCTGGCGCCTCAGACCTCCCCTGCCGGAACGGGCGAGGAAGAGCTC
GGAACCGCGGCACCCGCGACGGAGGCGTTTATGTGCCCGCCGCCGGTTCC
CTGCGTTTGTGATGCGCCCACACCGGCGCCAACGAGCGAGGATTCGATGA
TAGAGCCTTCGTCCTCTTTCTCGTTCTCCTTCGACCCTCTGCCACAGCCC
ACCTCTGCCTCCGCATCGTCGGAACCGGCCGTGGGGGAGTTTGAGTCGTC
CGGGTTCGAAGTGGTGGCTGACGAAGTGGCGGGTGACGAGATCGACTGCT
ACAGCCTTCTCTCCGAGGAAATGAAGGTGTACCTGGAACAGGAGGACAAG
GGGCTGTTCTACGACGAGGACTGCACTGGCACCCATTGCAACATGTTCGG
CGTAGCCCAGGACTGCCGTAGCTGCTACATGGACTGCACCGTCTGCGAGG
AGGAACCGGGATCGTGTACCTGGAACAGGAGGACAAGGGGCTGTTCTACG
ACGAGGACTGCACTGGCACCCATTGCAACATGTTCGGCGTAGCCCAGGAC
TGCCGTAGCTGCTACATGGACTGCACCGTCTGCGAGGAGGAACCGGGATC
GGTTATGTGCCCCTCAGAGTTCCCCATGATAAGCGGCGAGGCCCAGTCGT
GCGCCTCGGCTTGCGGCATCGAGGACGCCACCGCGAATCGCCGTCTCCGC
GGGGGTTATGTGCCCCTCAGAGTTCCCCATGATAAGCGGCGAGGCCCAGT
CGTGCGCCTCGGCTTGCGGCATCGAGGACGCCACCGCGAATCGCCGTCTC
CGCGGG
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