mRNA_L-elsbetiae_contig724.16103.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig724.16103.1
Unique NamemRNA_L-elsbetiae_contig724.16103.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig724.16103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig724contigL-elsbetiae_contig724:1112..3978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1419
Cds size768
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig724.16103.1prot_L-elsbetiae_contig724.16103.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig724 1763..3978 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.5424633-UTR-L-elsbetiae_contig724:1111..17621622816806.5424633-UTR-L-elsbetiae_contig724:1111..1762Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig724 1112..1762 -
1691683827.6814325-UTR-L-elsbetiae_contig724:1111..17621691683827.6814325-UTR-L-elsbetiae_contig724:1111..1762Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig724 1112..1762 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.5527632-CDS-L-elsbetiae_contig724:1762..17661622816806.5527632-CDS-L-elsbetiae_contig724:1762..1766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig724 1763..1766 -
1691683827.692322-CDS-L-elsbetiae_contig724:1762..17661691683827.692322-CDS-L-elsbetiae_contig724:1762..1766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig724 1763..1766 -
1622816806.564622-CDS-L-elsbetiae_contig724:3214..39781622816806.564622-CDS-L-elsbetiae_contig724:3214..3978Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig724 3215..3978 -
1691683827.7045484-CDS-L-elsbetiae_contig724:3214..39781691683827.7045484-CDS-L-elsbetiae_contig724:3214..3978Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig724 3215..3978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig724.16103.1

>prot_L-elsbetiae_contig724.16103.1 ID=prot_L-elsbetiae_contig724.16103.1|Name=mRNA_L-elsbetiae_contig724.16103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=256bp
TKWPSYGVAGTKTAEFCSGHKKEGMVDVLSKRCIHHCCTKHPAFGVAGTK
TAEFCSAHKKDGMVNIRNKMCTRHGCTKQPNYGVAGSKTAEFCSEHKKEG
MVDVKNSRCNYATCTNQSSHGIIGTTKREPCAHHAEGDMAHHTPSNYRSS
GEARGDSGSKHGRDRVAVGNIGAAHGTGAGQERKGRASSSEQTEVFSNKR
ARQAPVDPPAAPHPSEKPVDEGPSSEEDASVSERGNAAVKTEAGVFSIGR
RGSWR*
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mRNA from alignment at L-elsbetiae_contig724:1112..3978-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig724.16103.1 ID=mRNA_L-elsbetiae_contig724.16103.1|Name=mRNA_L-elsbetiae_contig724.16103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2867bp|location=Sequence derived from alignment at L-elsbetiae_contig724:1112..3978- (Laminarionema elsbetiae ELsaHSoW15)
ACCAAGTGGCCCAGCTATGGTGTTGCTGGCACGAAAACAGCGGAGTTCTG
CTCTGGGCACAAGAAGGAGGGGATGGTGGATGTCTTGAGCAAGAGGTGCA
TTCACCACTGTTGCACCAAGCACCCGGCCTTTGGTGTTGCCGGCACCAAA
ACAGCGGAGTTCTGCTCTGCACACAAGAAGGATGGGATGGTGAATATCAG
GAACAAGATGTGCACCCGCCACGGTTGCACCAAGCAGCCGAACTATGGTG
TTGCCGGCAGCAAAACAGCGGAGTTCTGCTCTGAACATAAGAAGGAGGGA
ATGGTGGATGTCAAGAACAGCAGATGCAACTACGCCACTTGCACCAACCA
GTCGAGCCATGGTATTATCGGCACCACCAAGAGAGAACCATGTGCCCACC
ACGCCGAAGGGGACATGGCCCACCACACTCCATCAAATTACAGGTCCAGC
GGTGAAGCACGGGGCGACAGCGGCAGCAAGCATGGCCGTGACCGTGTAGC
AGTGGGCAACATTGGCGCCGCCCACGGTACTGGTGCCGGTCAAGAGCGGA
AGGGCCGTGCTTCCTCGTCCGAGCAGACGGAGGTCTTCTCGAACAAGAGA
GCCCGCCAGGCTCCCGTTGACCCACCTGCAGCTCCACACCCATCGGAAAA
ACCTGTCGATGAGGGCCCATCCTCGGAGGAAGATGCTTCGGTGTCGGAGC
GAGGCAATGCTGCGGTCAAGACGGAGGCGGGGGTGTTTAGTATCGGACGG
CGAGGGAGCTGGAGGTGAGCTGAAAACTATATGCTGCTTTTCTTGGTGTA
TTTACTGCTGTAACCTTGTTTGGGCTTGTTGCCGTGAATTAGTTGACTCC
TCTGGTTGGTGTTAGGCCCGTCATAGGCCGCAAGGCGAGCAGCCCAGAAA
ACGCGGCGGGACTGATAAAAATAACGGGTCCACCAAGGGTCTTGTCAGGA
GGAAACTTTGATACACGTAGAACCCAAATCGAAATTTCGAGTCCTTTGGG
GGGGGCGGTCCACGTCTCCAGAAGTTTCCTCCTGACAGACCCTTGGGTCC
ACAGAGCAGATACGTGGGTTCTCTGCAATGAAAGGAGACTTCCGTTTGCA
GAAGTCAATCCCACAGCCGAACACGCATCGCGGCCGTGTCACCGCGCGGC
AACACACTGGGGAGGTCTGTTGGCACACTAGAAAGGTTCATGGACCCTGA
AAACATGACTGCTAGTGTTCGCTCAAAACGTTTTTCTCCTTTGTAGGGCT
GTCCCGGGTTCTGAACTCTTCTGAAAGCAGTCTAAATTCAGTATATACGC
AGTCTAAGTTCAGTACATACCAGATACTCGCCAAAAATAATCGCTAAATC
CGTGTCGAAGTGCCCTAAATAGGGCAATAGGCTACTTCTATACTTCTCGA
GGGGCCACCAGATAGAGTCCCGCCTCTGGCGCTCGGTTACTTTGTAATAC
CCAACAGCAACTCGGCAAGCAGATCGATCTACACCGGTTGCTGGTGTAGA
CCGAGATCGAAGAGGTGTCTGGCGATGTACTGGTGTAGATATGTACTTGT
GCTGGTGGTGCGGGTATGCATGTGTGGTTTGCACGCTGCGTCATGTGATG
TGTAGGATGAGAGCGAAAGCAAAACCGATTTTGTTAGTAAACCCCCCAAC
TCCCAAATAAATGCAACAGCCCAGCAGCAGCGGCAGCGGCAGCGGCAGCT
GTAGGAGTCTGCCGCAGACGAAACATAACGTTACACCCCTGCGGCTGCTG
TGCCACCCCATTTGGCTGGCCATTTCGGTTGTTCATGTTATCGTCCCGAT
GTGCCGACTAGCCCAGGTCCGCACAAAACGGGGCGTCTCAATAATCGCTT
TTTGTAATCGCCAAAACCCCCTTGAAACCCTAGAAGGGTTAAGTAGGGGA
GCGGGGGTGGGTTCAGATGGTGTGAATTATTGGCATCGTTGTGCAAAACA
TGTAGTAGAGCATCTGCGACAAAGCTCGGCACCCAATGATGCGTCATCGA
CATTGCTTCGTGGACCCCAACGATCGAATCATCAAGTAGACGCAGAGGCA
GTGGCAAGTGCACCATAGTATGTGAAGAAACTGAACATGGTGGTCTCAAG
CATAATTCAAATAACATTTTGCCCCGCTAAGAGCCTTGAAATATGGGCCA
CTGCCGTGTTCACTCCATGTTGCCGAACACCGCTTGTTTTGATTTTGAAA
ACACTGCGCCAGGTGAAATTGGGCCCTGGTGCCATAATATGCGAGCGACC
CAGCCAAGGTGTGAGTTTCGTGACAAACCATGCATTTCGTATTGGGCGTC
ACAGGCATTGTTGCCGGCATCAACCCGCAGCATCGCATGAACACGAGTGC
TGACGGTGATGGCTGGGGCACAGGTAGCAGCAGGGTTCGTGGTGTATTAT
AAATCTTGGCTGTGCTTGGCGTTGTGCCTGGAGACGGTGCGGTATTCGGC
ATTTATCGTTTCCCGGCTGTTTGTTTTCTTTTTTTTCGGCATTGGTGGCA
GCAATATGGTCTGTTTTTGCTATCTGCCGACGTGGGCGTTCTTTGTCGAA
ATGAAAGAGGCGTTATTTTGTTTGATCGGACGAGAATAAGAGGGTGGTTG
TCTTGATTTGATCGTCGTGCAAAAGGGGGCGTGAGGCAGCAACGTGGTGC
TGGACTGGCGGTGGCGGACTGGCGTTCGGGGTATGAAGTTCGTCTGACGT
AAAATATATATAGAAGTACAAGTTTTTCGGCGGCTGACGCCGCCACGCTA
TAACTACCGCGGGCCCCAAGATGCATGAGAGTGGTGTGCTGACCTGCGTG
AGTTGGGGAAGGGTTTGTTTGCAGAAATATTCTGGAAGCATTTGCATAAA
TTGGATGATATGGTGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig724:1112..3978-

>mRNA_L-elsbetiae_contig724.16103.1 ID=mRNA_L-elsbetiae_contig724.16103.1|Name=mRNA_L-elsbetiae_contig724.16103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1536bp|location=Sequence derived from alignment at L-elsbetiae_contig724:1112..3978- (Laminarionema elsbetiae ELsaHSoW15)
ACCAAGTGGCCCAGCTATGGTGTTGCTGGCACGAAAACAGCGGAGTTCTG
CTCTGGGCACAAGAAGGAGGGGATGGTGGATGTCTTGAGCAAGAGGTGCA
TTCACCACTGTTGCACCAAGCACCCGGCCTTTGGTGTTGCCGGCACCAAA
ACAGCGGAGTTCTGCTCTGCACACAAGAAGGATGGGATGGTGAATATCAG
GAACAAGATGTGCACCCGCCACGGTTGCACCAAGCAGCCGAACTATGGTG
TTGCCGGCAGCAAAACAGCGGAGTTCTGCTCTGAACATAAGAAGGAGGGA
ATGGTGGATGTCAAGAACAGCAGATGCAACTACGCCACTTGCACCAACCA
GTCGAGCCATGGTATTATCGGCACCACCAAGAGAGAACCATGTGCCCACC
ACGCCGAAGGGGACATGGCCCACCACACTCCATCAAATTACAGGTCCAGC
GGTGAAGCACGGGGCGACAGCGGCAGCAAGCATGGCCGTGACCGTGTAGC
AGTGGGCAACATTGGCGCCGCCCACGGTACTGGTGCCGGTCAAGAGCGGA
AGGGCCGTGCTTCCTCGTCCGAGCAGACGGAGGTCTTCTCGAACAAGAGA
GCCCGCCAGGCTCCCGTTGACCCACCTGCAGCTCCACACCCATCGGAAAA
ACCTGTCGATGAGGGCCCATCCTCGGAGGAAGATGCTTCGGTGTCGGAGC
GAGGCAATGCTGCGGTCAAGACGGAGGCGGGGGTGTTTAGTATCGGACGG
CGAGGGAGCTGGAGACCAAGTGGCCCAGCTATGGTGTTGCTGGCACGAAA
ACAGCGGAGTTCTGCTCTGGGCACAAGAAGGAGGGGATGGTGGATGTCTT
GAGCAAGAGGTGCATTCACCACTGTTGCACCAAGCACCCGGCCTTTGGTG
TTGCCGGCACCAAAACAGCGGAGTTCTGCTCTGCACACAAGAAGGATGGG
ATGGTGAATATCAGGAACAAGATGTGCACCCGCCACGGTTGCACCAAGCA
GCCGAACTATGGTGTTGCCGGCAGCAAAACAGCGGAGTTCTGCTCTGAAC
ATAAGAAGGAGGGAATGGTGGATGTCAAGAACAGCAGATGCAACTACGCC
ACTTGCACCAACCAGTCGAGCCATGGTATTATCGGCACCACCAAGAGAGA
ACCATGTGCCCACCACGCCGAAGGGGACATGGCCCACCACACTCCATCAA
ATTACAGGTCCAGCGGTGAAGCACGGGGCGACAGCGGCAGCAAGCATGGC
CGTGACCGTGTAGCAGTGGGCAACATTGGCGCCGCCCACGGTACTGGTGC
CGGTCAAGAGCGGAAGGGCCGTGCTTCCTCGTCCGAGCAGACGGAGGTCT
TCTCGAACAAGAGAGCCCGCCAGGCTCCCGTTGACCCACCTGCAGCTCCA
CACCCATCGGAAAAACCTGTCGATGAGGGCCCATCCTCGGAGGAAGATGC
TTCGGTGTCGGAGCGAGGCAATGCTGCGGTCAAGACGGAGGCGGGGGTGT
TTAGTATCGGACGGCGAGGGAGCTGGAGGTGAGTGA
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