mRNA_L-elsbetiae_contig7239.16102.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7239.16102.1
Unique NamemRNA_L-elsbetiae_contig7239.16102.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7239.16102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7239contigL-elsbetiae_contig7239:6930..7287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.4302003-UTR-L-elsbetiae_contig7239:6929..69361622816806.4302003-UTR-L-elsbetiae_contig7239:6929..6936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7239 6930..6936 +
1691683827.612922-UTR-L-elsbetiae_contig7239:6929..69361691683827.612922-UTR-L-elsbetiae_contig7239:6929..6936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7239 6930..6936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.4405453-CDS-L-elsbetiae_contig7239:6936..72871622816806.4405453-CDS-L-elsbetiae_contig7239:6936..7287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7239 6937..7287 +
1691683827.6223092-CDS-L-elsbetiae_contig7239:6936..72871691683827.6223092-CDS-L-elsbetiae_contig7239:6936..7287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7239 6937..7287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7239.16102.1prot_L-elsbetiae_contig7239.16102.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7239 6937..7287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7239.16102.1

>prot_L-elsbetiae_contig7239.16102.1 ID=prot_L-elsbetiae_contig7239.16102.1|Name=mRNA_L-elsbetiae_contig7239.16102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MPKHARWSWQQRHSAPPRNTQKRLGSHASKLIKRSKSRRGAQGRPRRTLL
QLPRPTLSWRRLSAANSHSRRERRRFTTWVARAKTKRWAGRARVLPPWTS
WRCWPRSVSLWFREVAE
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mRNA from alignment at L-elsbetiae_contig7239:6930..7287+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7239.16102.1 ID=mRNA_L-elsbetiae_contig7239.16102.1|Name=mRNA_L-elsbetiae_contig7239.16102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=358bp|location=Sequence derived from alignment at L-elsbetiae_contig7239:6930..7287+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGAACATGCCCAAGCACGCGCGTTGGAGCTGGCAGCAGAGGCACAGCG
CACCGCCGCGGAACACACAGAAGCGGCTCGGGTCGCACGCGAGCAAGCTA
ATCAAGCGGTCGAAGAGCAGGAGAGGCGCGCAAGGGAGGCCGAGGAGGAC
GCTCCTGCAGCTACCGCGCCCAACCCTGTCCTGGAGGCGGCTCTCCGCCG
CCAACAGCCACAGCAGGAGGGAGAGGCGGAGGTTCACGACGTGGGTGGCG
AGAGCGAAGACGAAGAGATGGGCGGGACGGGCGCGCGTGCTACCGCCATG
GACCTCTTGGCGCTGTTGGCCCAGGAGCGTCTCCCTGTGGTTCAGGGAGG
TTGCTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7239:6930..7287+

>mRNA_L-elsbetiae_contig7239.16102.1 ID=mRNA_L-elsbetiae_contig7239.16102.1|Name=mRNA_L-elsbetiae_contig7239.16102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig7239:6930..7287+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCAAGCACGCGCGTTGGAGCTGGCAGCAGAGGCACAGCGCACCGCC
GCGGAACACACAGAAGCGGCTCGGGTCGCACGCGAGCAAGCTAATCAAGC
GGTCGAAGAGCAGGAGAGGCGCGCAAGGGAGGCCGAGGAGGACGCTCCTG
CAGCTACCGCGCCCAACCCTGTCCTGGAGGCGGCTCTCCGCCGCCAACAG
CCACAGCAGGAGGGAGAGGCGGAGGTTCACGACGTGGGTGGCGAGAGCGA
AGACGAAGAGATGGGCGGGACGGGCGCGCGTGCTACCGCCATGGACCTCT
TGGCGCTGTTGGCCCAGGAGCGTCTCCCTGTGGTTCAGGGAGGTTGCTGA
GATGCCCAAGCACGCGCGTTGGAGCTGGCAGCAGAGGCACAGCGCACCGC
CGCGGAACACACAGAAGCGGCTCGGGTCGCACGCGAGCAAGCTAATCAAG
CGGTCGAAGAGCAGGAGAGGCGCGCAAGGGAGGCCGAGGAGGACGCTCCT
GCAGCTACCGCGCCCAACCCTGTCCTGGAGGCGGCTCTCCGCCGCCAACA
GCCACAGCAGGAGGGAGAGGCGGAGGTTCACGACGTGGGTGGCGAGAGCG
AAGACGAAGAGATGGGCGGGACGGGCGCGCGTGCTACCGCCATGGACCTC
TTGGCGCTGTTGGCCCAGGAGCGTCTCCCTGTGGTTCAGGGAGGTTGCTG
AG
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