mRNA_L-elsbetiae_contig7230.16090.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: D8LS42_ECTSI (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS42_ECTSI) HSP 1 Score: 399 bits (1024), Expect = 1.450e-133 Identity = 211/275 (76.73%), Postives = 223/275 (81.09%), Query Frame = 1 Query: 1 SSARTLATLLALFSCVSLSRAF--VSGRAAATTTTTATNGCRHTAVRGRPLCRVSSRPPAPVAGLPPRAPPELRSTGGDS-EGGDGDDGIFGGLKRWWITDGKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSRGTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIET 816 S AR LA LL L S V LSRAF +SGR AT+T + +H A G V R +P+ GLPPR P LRS GD +G GIFGG++ WW DGKSDLKIYGTSLA+ALVVRSVA+EPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKF EFS RG DALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEY WGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRA+FKYWP WR GTIET Sbjct: 14 SGARALAGLLVLSSLVQLSRAFGGISGRTTATSTARTSGWRQHHAHGGG----VRHRSLSPIVGLPPRVPHGLRSEAGDGGQGXXXXXGIFGGIQEWWERDGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGKKDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIET 284
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A6H5KUG3_9PHAE (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUG3_9PHAE) HSP 1 Score: 372 bits (956), Expect = 2.050e-124 Identity = 181/211 (85.78%), Postives = 188/211 (89.10%), Query Frame = 1 Query: 187 LPPRAPPELRSTGGDS-EGGDGDDGIFGGLKRWWITDGKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSRGTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIET 816 +PPR P LRS GD +G GIFGG++ WW DGKSDLKIYGTSLA+ALVVRSVA+EPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKF EFS RG DALIKRVIAVGGD VQIKDGSLFVNGQEQFEDYTFEEPEY WGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRA+FKYWP WR GTIET Sbjct: 1 MPPRVPHGLRSEAGDGGQGXXXXXGIFGGIQEWWERDGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGKKDALIKRVIAVGGDVVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIET 211
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A6T5N089_HETAK (Mitochondrial inner membrane protease subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5N089_HETAK) HSP 1 Score: 258 bits (658), Expect = 9.330e-79 Identity = 127/185 (68.65%), Postives = 152/185 (82.16%), Query Frame = 1 Query: 268 GLKRWWITD-GKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSRGTNDALIKRVIAVGGDAVQIKDGS-LFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIET 816 GL W ++ GK DL+IYGTSLA+ALV+R+ +EPR+IPSLSM+PTF+IGDQLAVDKLS K++RPYQR+DVVVF PP FS FS R +ALIKRV+AV GD V+IKDG LF+NG++Q E YT E+ Y+WGPQTVP+G V+VLGDNRNHSLD H+WGFLPTEN+IGRAVFKYWP WR G I Sbjct: 88 GLINWAQSEEGKEDLRIYGTSLAVALVLRTFVVEPRWIPSLSMYPTFDIGDQLAVDKLS-KVARPYQRRDVVVFTPPDAFSIFSDR-RGEALIKRVVAVAGDVVEIKDGGHLFINGEKQEEKYTNEDALYEWGPQTVPKGCVLVLGDNRNHSLDGHVWGFLPTENIIGRAVFKYWPPWRAGGIAV 270
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A7S2S8J5_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J5_9STRA) HSP 1 Score: 243 bits (619), Expect = 5.010e-73 Identity = 126/216 (58.33%), Postives = 156/216 (72.22%), Query Frame = 1 Query: 187 LPPRAPPELRSTGGDSEG---GDGDDGIFGGLKRWWIT-DGKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSRGTN-DALIKRVIAVGGDAVQIKDG-SLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIET 816 LPP G EG G+ DD + +RWW D ++++K Y SL +AL+ R+ +EPRFIPSLSMFPTF++GDQLAVDK+S K+ RPY+R DVVVF PP F + GT +ALIKRV+AV GD V++KDG +L+VNG Q E +T E+ Y WGP+ VP GM+MVLGDNRNHSLDSH+WGFLP ENVIGRAVFKYWP+WR+G IET Sbjct: 47 LPPIGRRGNAPEGSSDEGAKDGNVDDSLQAKAQRWWADEDLRAEVKSYTVSLGLALLFRAFIVEPRFIPSLSMFPTFDVGDQLAVDKIS-KVVRPYERNDVVVFTPPQAFFDVMGSGTKKEALIKRVVAVAGDVVEMKDGGTLYVNGVPQPEGFTNEKAFYDWGPREVPAGMLMVLGDNRNHSLDSHVWGFLPKENVIGRAVFKYWPVWRLGLIET 261
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A836CAW9_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW9_9STRA) HSP 1 Score: 230 bits (587), Expect = 6.470e-70 Identity = 105/151 (69.54%), Postives = 126/151 (83.44%), Query Frame = 1 Query: 361 IEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSRGTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIE 813 +EPR+IPSLSMFPTFE+GDQLAV+K++ + RPY R DVVVFYPP FS FS+RGT++ALIKR++AV GD VQI+ G +++NGQ Q E + ++PEY+WGP VP G VMVLGDNRNHSLDSHIWGFLP ENVIGRAVFKYWP WR G +E Sbjct: 1 MEPRYIPSLSMFPTFEVGDQLAVEKVT-RYYRPYSRHDVVVFYPPEAFSLFSARGTDEALIKRIVAVEGDTVQIRGGKVYLNGQAQDEPFVTDKPEYEWGPMVVPAGKVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGAVE 150
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A7R9WYP6_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYP6_9STRA) HSP 1 Score: 232 bits (591), Expect = 2.620e-68 Identity = 112/194 (57.73%), Postives = 145/194 (74.74%), Query Frame = 1 Query: 247 GDDGIFGGLKRWWITD-GKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEF-------SSRGTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVG 804 G+DGI G++RW +D GK D+K Y TSLA+AL++R IEPRFIPSLSM+PTF++GDQLAV+K++ ++ +P R++VVVF PP F E + +ALIKR++A+ GD V++K G L++NG Q E YT E+ EY++GP VPEG V+VLGDNRNHSLD HIWGFLP ENVIGRAVF YWP WR+G Sbjct: 111 GEDGILSGIQRWLKSDEGKEDIKTYFTSLALALLLRFTIIEPRFIPSLSMYPTFDVGDQLAVEKVTKRI-KPLYRREVVVFNPPATFREVIVNDYGQDPKRAKEALIKRIVAIEGDQVEVKKGKLYINGDLQNEPYTAEDAEYEFGPVVVPEGAVLVLGDNRNHSLDGHIWGFLPQENVIGRAVFVYWPPWRLG 303
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: B8BZJ0_THAPS (Mitochondrial inner membrane protease subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZJ0_THAPS) HSP 1 Score: 227 bits (579), Expect = 2.990e-68 Identity = 110/181 (60.77%), Postives = 138/181 (76.24%), Query Frame = 1 Query: 277 RWWITD-GKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEF---SSRGTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGT 807 W+ +D GK D+K Y SL +AL++R + IEPR+IPSLSMFPTFE+GDQLAV+K++ ++ RP+ R +VVVF+PP KF E +SR +ALIKR++A GD V++ G LFVNG EQ E +T E+ EY +GP VP G V+VLGDNRNHSLD HIWGFLPTENVIGRAVF YWP WR G+ Sbjct: 1 EWFASDEGKEDVKTYTVSLGVALLLRLLIIEPRYIPSLSMFPTFEVGDQLAVEKVTKRI-RPFSRNEVVVFHPPMKFREIVGDTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGVEQEEPFTAEDAEYDFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPTENVIGRAVFVYWPPWRCGS 180
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A7J7IBZ0_9RHOD (Mitochondrial inner membrane protease subunit n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IBZ0_9RHOD) HSP 1 Score: 226 bits (576), Expect = 6.260e-67 Identity = 110/200 (55.00%), Postives = 138/200 (69.00%), Query Frame = 1 Query: 274 KRWW----ITDGKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSR----------------GTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIE 813 +RWW + SD++++ S A A+++R IEPR+IPSLSMFPTFEIGDQL VDK + KL R +R DVVVFYPPP E S G DA+IKRV+AV GD V ++DG L+VNG+ Q E Y E+P+Y+WGP VPEG ++VLGDNR++SLDSHIWGFLP NVIGRAVF+YWP+ R+G IE Sbjct: 46 RRWWHRLLYDEQFSDVRVFTASFAAAVLLRVFVIEPRYIPSLSMFPTFEIGDQLFVDKATQKLGRHIERGDVVVFYPPPALIEASKMTAQALNAAGEKDVHQYGAKDAMIKRVVAVAGDTVAVRDGRLYVNGEAQIEPYVTEQPDYRWGPVQVPEGCLVVLGDNRSNSLDSHIWGFLPERNVIGRAVFRYWPITRMGLIE 245
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: M1UNG9_CYAM1 (Mitochondrial inner membrane protease subunit n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1UNG9_CYAM1) HSP 1 Score: 228 bits (581), Expect = 1.810e-66 Identity = 107/196 (54.59%), Postives = 139/196 (70.92%), Query Frame = 1 Query: 274 KRWWITDGKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSR----------------GTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIE 813 +R W D +D++++ S A+ +R+ +EPR+IPSLSM+PTF++GDQL VDK++ KL R QR DVVVFYPPP E S G DA+IKRV+A+GGD V+I+DG L+VNG+ Q E Y E P+Y+WGP VP+G ++VLGDNR++SLDSH+WGFLP NVIGRAVF+YWPL RVGTIE Sbjct: 140 QRLWRDDKFADVRVFTASFLAAVFIRAFVVEPRYIPSLSMYPTFDVGDQLLVDKVTLKLGRHIQRGDVVVFYPPPALIEASKETAKALNAAGETGAHQYGARDAMIKRVVALGGDVVEIRDGRLYVNGEAQIETYIAESPDYQWGPVQVPDGYLVVLGDNRSNSLDSHVWGFLPERNVIGRAVFRYWPLTRVGTIE 335
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A6V1AJW1_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V1AJW1_9STRA) HSP 1 Score: 226 bits (576), Expect = 2.200e-66 Identity = 111/187 (59.36%), Postives = 144/187 (77.01%), Query Frame = 1 Query: 259 IFGGLKRWWITD-GKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEF---SSRGTNDALIKRVIAVGGDAVQIK-DGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVG 804 F ++ W+ +D GK D+K Y SL++AL++R + IEPR+IPSLSM+PTFE+GDQLAV+K++ ++ RP+ R +VVVF PP +F E SSR + +ALIKR++AV GD V++K G LFVNG +Q E +T E+ EY++GP VP G V+VLGDNRNHSLD HIWGFLP ENVIGRAVF YWP WRVG Sbjct: 96 FFEQIQEWFASDEGKEDVKTYTVSLSVALLLRLLIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRI-RPFNRNEVVVFNPPERFRELVGESSRKSKEALIKRIVAVEGDTVEVKMGGKLFVNGVQQDEPFTAEDAEYEFGPVIVPPGDVLVLGDNRNHSLDGHIWGFLPAENVIGRAVFVYWPPWRVG 281 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7230.16090.1 >prot_L-elsbetiae_contig7230.16090.1 ID=prot_L-elsbetiae_contig7230.16090.1|Name=mRNA_L-elsbetiae_contig7230.16090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp MFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSRGTNDALback to top mRNA from alignment at L-elsbetiae_contig7230:1081..4753+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7230.16090.1 ID=mRNA_L-elsbetiae_contig7230.16090.1|Name=mRNA_L-elsbetiae_contig7230.16090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3673bp|location=Sequence derived from alignment at L-elsbetiae_contig7230:1081..4753+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7230:1081..4753+ >mRNA_L-elsbetiae_contig7230.16090.1 ID=mRNA_L-elsbetiae_contig7230.16090.1|Name=mRNA_L-elsbetiae_contig7230.16090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig7230:1081..4753+ (Laminarionema elsbetiae ELsaHSoW15)back to top |