mRNA_L-elsbetiae_contig7229.16084.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7229.16084.1
Unique NamemRNA_L-elsbetiae_contig7229.16084.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7229.16084.1 vs. uniprot
Match: D7FLW1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.080e-6
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:   52 SRQHNYTESPTREPSKRQRKASMPMT----GAGSGRAEGVAASGNSTGAIIQRRGGRQKQCGHPGCTTQPSFGMTGSTKRQYCSKHAKRGMVS 318
            SRQ N+ ES   + SKRQRK S P T    G+G   A    A+  ST  I + RG  Q  C   GC+ +PS+G   S K ++CS+HAK+GMV+
Sbjct:  191 SRQPNHAES---DSSKRQRKGSAPGTKAQCGSGGAAAAHKTATKLSTPVIARHRGRGQPSCEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVN 280
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BLAST of mRNA_L-elsbetiae_contig7229.16084.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.310e-5
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:  202 GGRQKQCGHPGCTTQPSFGMTGSTKRQYCSKHAKRGMVS 318
            G R  QCGH  CT +P++G+ GS KR++CS+HA+ GMV+
Sbjct:   58 GSRMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVN 96
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7229.16084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLW1_ECTSI2.080e-644.09EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE7.310e-553.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7229contigL-elsbetiae_contig7229:5919..8072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1179
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7229.16084.1prot_L-elsbetiae_contig7229.16084.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7229 6432..7775 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.022259-UTR-L-elsbetiae_contig7229:5918..59951622816805.022259-UTR-L-elsbetiae_contig7229:5918..5995Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7229 5919..5995 +
1691683826.5473528-UTR-L-elsbetiae_contig7229:5918..59951691683826.5473528-UTR-L-elsbetiae_contig7229:5918..5995Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7229 5919..5995 +
1622816805.0349746-UTR-L-elsbetiae_contig7229:6391..64311622816805.0349746-UTR-L-elsbetiae_contig7229:6391..6431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7229 6392..6431 +
1691683826.5578353-UTR-L-elsbetiae_contig7229:6391..64311691683826.5578353-UTR-L-elsbetiae_contig7229:6391..6431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7229 6392..6431 +
1622816805.07198-UTR-L-elsbetiae_contig7229:7775..80721622816805.07198-UTR-L-elsbetiae_contig7229:7775..8072Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7229 7776..8072 +
1691683826.6047451-UTR-L-elsbetiae_contig7229:7775..80721691683826.6047451-UTR-L-elsbetiae_contig7229:7775..8072Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7229 7776..8072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.0486608-CDS-L-elsbetiae_contig7229:6431..64881622816805.0486608-CDS-L-elsbetiae_contig7229:6431..6488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 6432..6488 +
1691683826.5791693-CDS-L-elsbetiae_contig7229:6431..64881691683826.5791693-CDS-L-elsbetiae_contig7229:6431..6488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 6432..6488 +
1622816805.0598755-CDS-L-elsbetiae_contig7229:7067..77751622816805.0598755-CDS-L-elsbetiae_contig7229:7067..7775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 7068..7775 +
1691683826.591466-CDS-L-elsbetiae_contig7229:7067..77751691683826.591466-CDS-L-elsbetiae_contig7229:7067..7775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 7068..7775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7229.16084.1

>prot_L-elsbetiae_contig7229.16084.1 ID=prot_L-elsbetiae_contig7229.16084.1|Name=mRNA_L-elsbetiae_contig7229.16084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
MPMTGAGSGRAEGVAASGNSTGAIIQRRGGRQKQCGHPGCTTQPSFGMTG
STKRQYCSKHAKRGMVSAYSKRCGHPGCTTQPIFGMAGSKKREFCSKHSK
PGMIDIKNQKCGHQGCTTRPYFGMVGTKKAEFCSKHAKPGMIDVKSHKCG
HQGCATIPYFGMVGSKKKEFCSKHAKPGMVDVKNKRCGHPGCTTQPYFGM
VGSKKKEFCSKHAKPGMVDVKHKKCGHSGCTTSVNFTGTGSKQGEFCSKH
AKNI*
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mRNA from alignment at L-elsbetiae_contig7229:5919..8072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7229.16084.1 ID=mRNA_L-elsbetiae_contig7229.16084.1|Name=mRNA_L-elsbetiae_contig7229.16084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2154bp|location=Sequence derived from alignment at L-elsbetiae_contig7229:5919..8072+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCAGGGCAACGGCAAGTCCCCCCACTGCAGAAGTGTCCGTGCAGGCGG
TAGCCGGCAACACAACTACACGGAAAGGTGAGCTTGCTCGTCATGACTGG
TATTTTACTAACTTTGAATACTTGCTGCAGCACAGGAGGCGAGGAGTAGT
CAATGGTGATCTCGAGGGATGTCCAGCGTGCAAAGCATGGCATCGCGGTA
CTTGCCAAATTTGTGGTATGGGTTGACTTGTTATTGTTCTTCCCAAACGT
GTCAGTGGCTGATGTTCCGGCTCATGAGCGTAGCTTCACTAGCAAGCTAT
GAAAATGTGAAGGGGCCTATCCACGAGAGGTAGCATGGGAACGATTTCAG
TACCAATCTCGTTACCGCAAAGACTTTTTTGCTGTCATTTATATTTCTTT
GTCATGCACTCGGCTGTACATCTCACGCGATTGTTTCTTTTTCCCCTCCC
TCATGTATGTGTTCGTTTGTCAGCCCCACGAGGGAGCCATCCAAGCGCCA
ACGGAAGGCATCCATGCCGATGACAGGGGCAGGAAGTGGGAGGGCTGAGG
GTGTGGCAGCTTCCGGAAACGTGAGTTCGTTGTGTTACTCTCTGGTTGTC
GACCCTCTTTATGTACGCGCAGCTAGCTGCCAAAGATATGAGTGATCGGG
TGAGCGCAGGGGCCGAATGGCATGCGGGGCTCCCGGAAAAGGGTTTGATG
TTCCAAGCCATTCGTGGTCGAGATAAATTCAAAATCCGCGAGACGCGCGA
AAACGCGCAAGAGACATACGGTAATCATGTAGAGTACCGCCAATTAAGAG
ACACCTGCCTTTTACGAGACACTGGTGGGCGATTTGCTCCATCTCGCCTG
GGAATGCTCTGATCGGCATGCTGAAATGCTCAAACAAAAGCCAACGGCAG
GTTTCCAAATAAAAAAATAAAACGAAGGGTCTTCGCGAATTGTGTGCGGA
GATATGCCAACTTCAAAAAGTGTGTTTCTTAATTGGCGGGTTTACTCTAC
CGCAGTAGAGAAAAGTGGGAGAAGACGAAGGATCTACGCTTGGTTGGCGT
TGTCTGATACCGTCCGATGTGACACTCAAGCGTGGTGAACCCGGCAATTT
TTGTTTCAAAACATGCGAATGCTTTGATGTGCTTTTGTGTTTGCTGCAGT
CCACCGGTGCAATCATTCAGCGCCGAGGAGGGAGGCAGAAACAGTGCGGC
CATCCAGGGTGCACCACACAACCAAGCTTCGGCATGACTGGCAGCACGAA
GAGGCAATACTGCTCCAAGCACGCCAAGCGGGGAATGGTCAGCGCCTACA
GCAAGAGATGCGGCCACCCAGGGTGCACTACACAACCAATCTTCGGCATG
GCCGGCAGCAAGAAAAGGGAGTTCTGCTCCAAGCACTCCAAGCCAGGGAT
GATCGATATCAAGAACCAAAAGTGCGGCCACCAAGGGTGTACCACGCGGC
CATACTTCGGCATGGTCGGCACCAAGAAGGCGGAGTTCTGCTCCAAGCAC
GCCAAGCCAGGGATGATCGATGTCAAGAGCCATAAATGCGGCCACCAAGG
GTGTGCCACGATCCCGTACTTCGGCATGGTCGGCAGCAAGAAAAAGGAAT
TCTGCTCCAAGCACGCCAAGCCAGGGATGGTCGATGTGAAGAACAAGAGG
TGCGGCCACCCAGGGTGCACCACACAGCCATACTTCGGCATGGTCGGCAG
CAAGAAAAAGGAATTCTGCTCCAAGCACGCCAAGCCAGGGATGGTCGATG
TCAAGCACAAAAAATGCGGTCACTCAGGGTGCACCACGTCGGTGAACTTC
ACCGGGACCGGCAGCAAGCAGGGAGAATTCTGCTCCAAGCACGCCAAGAA
TATTTGATGTAGGCACCGTCCTTCAGTCAGCCGAGGTGGTTGATATTTGA
GTTGTAAGTGATTGATGTAGGTTGATTTTTGAGTTGTAAGCTTTCCCAGT
TTTTCAAATTTTTTGTGTGCGCGTTGGAATTCCCGGTACGTGACTTTTTT
GTGTTATTCCAACAACTAGTCACCGCAACGTGTGAAGTCTCTTCAGCGTA
GGTAAGTAAAGCCAGTATGGCCTACTCCCTCATAAATCCATCACCTGTAC
GAGTTTGGGAAGTGGCAGCCCTGAGCCTGACAATACACCCGCAAAATAGA
GCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7229:5919..8072+

>mRNA_L-elsbetiae_contig7229.16084.1 ID=mRNA_L-elsbetiae_contig7229.16084.1|Name=mRNA_L-elsbetiae_contig7229.16084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig7229:5919..8072+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGATGACAGGGGCAGGAAGTGGGAGGGCTGAGGGTGTGGCAGCTTC
CGGAAACATGCCGATGACAGGGGCAGGAAGTGGGAGGGCTGAGGGTGTGG
CAGCTTCCGGAAACTCCACCGGTGCAATCATTCAGCGCCGAGGAGGGAGG
CAGAAACAGTGCGGCCATCCAGGGTGCACCACACAACCAAGCTTCGGCAT
GACTGGCAGCACGAAGAGGCAATACTGCTCCAAGCACGCCAAGCGGGGAA
TGGTCAGCGCCTACAGCAAGAGATGCGGCCACCCAGGGTGCACTACACAA
CCAATCTTCGGCATGGCCGGCAGCAAGAAAAGGGAGTTCTGCTCCAAGCA
CTCCAAGCCAGGGATGATCGATATCAAGAACCAAAAGTGCGGCCACCAAG
GGTGTACCACGCGGCCATACTTCGGCATGGTCGGCACCAAGAAGGCGGAG
TTCTGCTCCAAGCACGCCAAGCCAGGGATGATCGATGTCAAGAGCCATAA
ATGCGGCCACCAAGGGTGTGCCACGATCCCGTACTTCGGCATGGTCGGCA
GCAAGAAAAAGGAATTCTGCTCCAAGCACGCCAAGCCAGGGATGGTCGAT
GTGAAGAACAAGAGGTGCGGCCACCCAGGGTGCACCACACAGCCATACTT
CGGCATGGTCGGCAGCAAGAAAAAGGAATTCTGCTCCAAGCACGCCAAGC
CAGGGATGGTCGATGTCAAGCACAAAAAATGCGGTCACTCAGGGTGCACC
ACGTCGGTGAACTTCACCGGGACCGGCAGCAAGCAGGGAGAATTCTGCTC
CAAGCACGCCAAGAATATTTGATCCACCGGTGCAATCATTCAGCGCCGAG
GAGGGAGGCAGAAACAGTGCGGCCATCCAGGGTGCACCACACAACCAAGC
TTCGGCATGACTGGCAGCACGAAGAGGCAATACTGCTCCAAGCACGCCAA
GCGGGGAATGGTCAGCGCCTACAGCAAGAGATGCGGCCACCCAGGGTGCA
CTACACAACCAATCTTCGGCATGGCCGGCAGCAAGAAAAGGGAGTTCTGC
TCCAAGCACTCCAAGCCAGGGATGATCGATATCAAGAACCAAAAGTGCGG
CCACCAAGGGTGTACCACGCGGCCATACTTCGGCATGGTCGGCACCAAGA
AGGCGGAGTTCTGCTCCAAGCACGCCAAGCCAGGGATGATCGATGTCAAG
AGCCATAAATGCGGCCACCAAGGGTGTGCCACGATCCCGTACTTCGGCAT
GGTCGGCAGCAAGAAAAAGGAATTCTGCTCCAAGCACGCCAAGCCAGGGA
TGGTCGATGTGAAGAACAAGAGGTGCGGCCACCCAGGGTGCACCACACAG
CCATACTTCGGCATGGTCGGCAGCAAGAAAAAGGAATTCTGCTCCAAGCA
CGCCAAGCCAGGGATGGTCGATGTCAAGCACAAAAAATGCGGTCACTCAG
GGTGCACCACGTCGGTGAACTTCACCGGGACCGGCAGCAAGCAGGGAGAA
TTCTGCTCCAAGCACGCCAAGAATATTTGA
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