mRNA_L-elsbetiae_contig7229.16083.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7229.16083.1
Unique NamemRNA_L-elsbetiae_contig7229.16083.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7229.16083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7229contigL-elsbetiae_contig7229:617..5153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size958
Cds size663
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.923058-UTR-L-elsbetiae_contig7229:616..9001622816804.923058-UTR-L-elsbetiae_contig7229:616..900Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7229 617..900 +
1691683826.475146-UTR-L-elsbetiae_contig7229:616..9001691683826.475146-UTR-L-elsbetiae_contig7229:616..900Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7229 617..900 +
1622816804.9352598-UTR-L-elsbetiae_contig7229:3316..33271622816804.9352598-UTR-L-elsbetiae_contig7229:3316..3327Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7229 3317..3327 +
1691683826.4868665-UTR-L-elsbetiae_contig7229:3316..33271691683826.4868665-UTR-L-elsbetiae_contig7229:3316..3327Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7229 3317..3327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.9468145-CDS-L-elsbetiae_contig7229:3327..37401622816804.9468145-CDS-L-elsbetiae_contig7229:3327..3740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 3328..3740 +
1691683826.5006745-CDS-L-elsbetiae_contig7229:3327..37401691683826.5006745-CDS-L-elsbetiae_contig7229:3327..3740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 3328..3740 +
1622816804.9576223-CDS-L-elsbetiae_contig7229:3974..40151622816804.9576223-CDS-L-elsbetiae_contig7229:3974..4015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 3975..4015 +
1691683826.5103445-CDS-L-elsbetiae_contig7229:3974..40151691683826.5103445-CDS-L-elsbetiae_contig7229:3974..4015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 3975..4015 +
1622816804.967201-CDS-L-elsbetiae_contig7229:4264..43231622816804.967201-CDS-L-elsbetiae_contig7229:4264..4323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 4265..4323 +
1691683826.5188313-CDS-L-elsbetiae_contig7229:4264..43231691683826.5188313-CDS-L-elsbetiae_contig7229:4264..4323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 4265..4323 +
1622816804.9769418-CDS-L-elsbetiae_contig7229:4464..45871622816804.9769418-CDS-L-elsbetiae_contig7229:4464..4587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 4465..4587 +
1691683826.5276296-CDS-L-elsbetiae_contig7229:4464..45871691683826.5276296-CDS-L-elsbetiae_contig7229:4464..4587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 4465..4587 +
1622816804.9909525-CDS-L-elsbetiae_contig7229:5126..51531622816804.9909525-CDS-L-elsbetiae_contig7229:5126..5153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 5127..5153 +
1691683826.5369103-CDS-L-elsbetiae_contig7229:5126..51531691683826.5369103-CDS-L-elsbetiae_contig7229:5126..5153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7229 5127..5153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7229.16083.1prot_L-elsbetiae_contig7229.16083.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7229 3328..5153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7229.16083.1

>prot_L-elsbetiae_contig7229.16083.1 ID=prot_L-elsbetiae_contig7229.16083.1|Name=mRNA_L-elsbetiae_contig7229.16083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
MAAVKDHLKDSSEKLRLAFSDLKDVDQEVAALTAGVGDLPLSEAAARVSQ
GATMAVGVASRVLKAAEVAEAAAGKAAAAVIAARDTKAAVEQASAAAEHQ
LAAAAEAAAVAAQKREVAAVKAAGFEVKIQPLVLVNHRRCQNNVGGTSSE
EAATSSGGAIPGHGRATVAVKADESDISDDEEEEDDRMPPNYEEGSVGGG
MDQERREDENDETKPGEGERG
back to top

mRNA from alignment at L-elsbetiae_contig7229:617..5153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7229.16083.1 ID=mRNA_L-elsbetiae_contig7229.16083.1|Name=mRNA_L-elsbetiae_contig7229.16083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4537bp|location=Sequence derived from alignment at L-elsbetiae_contig7229:617..5153+ (Laminarionema elsbetiae ELsaHSoW15)
TCGGCGGCCACGGCCAGATTCGGCAACACGCCAGTGTTTTCGACGGATCT
GGGTGGTGTGGGGACTCCGCCTGGTAGTTAGTCCGCCGCTAATCCATCGG
ATGCGACGACTGAGAGCAGCTGGCAGAGAGAAACGAGAGAATACATGTTT
TCTCGACGCTGATTGGCGGGGGCATGACAGGTCCGTCAACTTCCGGGTGT
GAAGAGAGGCGTGCTGACTGGGGACGAGTGCGTGGCAACGGGAGAGAGGG
AGAGAGAGGAAACAGAACACTAGACCAGCTGCAGGTACGACGCTATTACT
GTGAGATCCTTACGGCTCCGCATCAGGTGCTGCGTTGCTGTCGGTATGCA
CCCACCTCGCCCTACTTTTATACATCACTAGTGCTGTCGTACATAGACCT
GCACCAGTCTCCCACCCCGAGTCACGCCCTGCTTGGAGGTTCTGCGGTAA
CCTCGTTCCCCCCCTCTCTTGGCGAATGATCAGATGTGGGTGATACTGCT
GTTCTGCACTGTTGTTTTGAAGTATTAGTGGTGTGCTTTGTATATACATA
TCCTCCAAATGCGCTCTAATCGTGCCGCACGAGTACGTACGTAAGATGCA
GCATGCACCACTGCAGGCTACGACTATGTAGAGGCACCTCCACCCGTGGC
TGTGTAGCTCCCACGGAATACACCGGTAGAGGAACAGGGCGCCGCCTTTC
AGGGATGGGGCACACATTTGAATGCCTGCAGCAATAAATGGACACATCGC
TACTATGTGAGGTATAATCGATGGGGAGGAACGACGTACACAGGTGGATT
GGCCTGACCGGCGAGAACCCGGCGAAGAACACCCCGGCATTGTTGGGGTA
CCAAGATAAGATGTTGAATGTTCAGTTATTGGTTTTACTCACATAGCGTG
TGGAGGGGAGCGAAGGGCTCCAGACTATCTGTGTCGTTTTTTTTGTTTTT
ATGCTTTGCTGACCCTTCAGGTCCATCTTTTTATTTTTCAGTATTATGCC
CTTTCTTACGGTAAGTTAGCCTGTGACTACAGGAATTGACCGCGTCGAGT
GTTTGAATAGTGCGGACGTGCGGAGGTACTGGATAGAGAGATCGGAACAG
TTTGTAATGTGAAGAAAATAACAACAACGACAACAACAACACACTCGAAA
CTCTCTTTATTCTGCGGGTTCCCGTGCTGAGGCGGCGTATTAATGACTAG
ACCATGTGCATATCCGCTTGAGGTGGATTGAATGAAACGTGCGTGCGGTA
CATTCGTGCGAAAATCTACGATATTCTCGTCTCTCTTGTTTGATATACTC
ACATCATTGTCAGATAGCAGAGAGAAATGCGTCGAAAAGATGGAACAAAG
ATTTGGGGGTTTCGTGTTTGTTGTATACTGTTTTCTGGGTATGCCTCTGC
AACCCTTCTTCGTTTGCCGGCTATTGGGTGCTGCTCAAGTAACTTATGTT
TTCCGGCTACCACACCAAGGAGCTATGTACCGCGCTCAAGCTATCTAACG
GCTACTACGCCGAGGGTTACTATAACCTGCAGGGTTTCTACACCCTGAGT
TGCCACACTAGACTTCACGGCAAGGGTTCAGCGGAATACCACATTTGCTC
GTGGGGTTTTTACATCTGCTCTCACATTTAGCTTTCCACGACTTTCTTCA
AGTACGTTGATCGAACTGGGTGTACTCTGCACGGGTCTACTCAACATCTC
TAGTAACTGTTTTTTTTCAGCTAGTAGAATGTTGCGGTTGTGTCAACTTG
TTGCGTTTCGGTCAAGAGTTGGCTGCATAGACTGTCTACACGTACCCTCT
TTCCATCTTGACTTGAAGATCTGCAAGTCTGTAAGTTACCACTTGTGCAA
TGGGCCTCTCATCAGCGTTTGTTAGTGCGTGTCGTGATGAACCCTTTTAG
TACACACGTACGCACGCCGTCTGAAAAAACGTTATCGCAAAATCAATTTT
CTTCCCATCTGGCTGCCCGCAGATTGGCCCGAGAAATGCAGTCCTCCTAA
AACCAAGCTGCAGGGACCCCAAACGTTTCGTGGCATTTTCCATATTAAAC
AGCAATCAAACTTGGGTGAAGGTTCGGTCACAATCTGCATACTCAAACCC
GAGTCAGACCTTTTTCACGTACCAGATAGTACAGAGTTCCCTGTCTTTGG
GACATTGTGTATAGACACCCGATGCAGCACCCACAGCACACCAAACAGTG
TGTCGGGCAGAGCAATCGGTTCAGCGCTCCGCAGACGGTGATTCTCGAGT
GTCGCAACGAAGCGGTGTGTGTGTGCTGTCAGCTCAACGGCTCAATCGCT
GGGGCGCCACGGAAGGTACAGAATTGGGATCGCAGAGACGTTGTTGTTTT
TTCGTGATTTTGGAGGTATCCGCAACAACTAAGTTGTATCCCCAGTGCTG
ATGTGGAGCTGTGTGGATGACATTTACGGCAGGCATAGTGTCCATATTCC
TCGACAGGGTATCCAGGCCTTGTTTCGGGTTTCAAAGACTACCATTCCAC
CTCGAAGCCGTGAAACATTGGCCCAAATCTAGTTGTCACCAAATCGTCAC
CAAATGGGCGTCCAGTATTAAAAGGGTACACTTATAGGTCAACCAAATTC
ATGTTGTTTGCCTTAGACCACCACTGACCCTCAAAGCTGCAACGCATGGG
AGCAACATTCACCACGTGACCCCACGCACCGTCGACTGCCCCGGACCTAG
GTCGCGAAAAAATGGCAGCAGTGAAAGATCACCTGAAAGATTCGTCGGAG
AAGCTCAGGCTCGCCTTCTCCGACCTCAAAGACGTCGATCAGGAAGTCGC
AGCTCTCACAGCCGGTGTGGGCGACCTCCCTCTGTCGGAAGCGGCCGCGA
GGGTGTCGCAAGGGGCAACAATGGCGGTAGGGGTGGCATCGAGAGTCTTG
AAAGCGGCGGAGGTGGCGGAGGCGGCTGCCGGCAAAGCAGCGGCGGCTGT
GATAGCGGCCCGCGACACAAAGGCAGCGGTAGAACAGGCGTCGGCAGCAG
CAGAACACCAGTTGGCAGCAGCAGCAGAGGCGGCCGCGGTAGCAGCCCAG
AAGAGAGAGGTGGCGGCGGTGAAAGCGGCAGGATTCGAAGTAAAGATCCA
GCCACTTGTGCTGGTTAACCACAGGTATAGCATGGTTCGATTAGCTAGAG
AATCGTGATGAGATCGGTCTGTTATAACGCGATATTTCGTACTTTACGAT
TCCTACGATAGTATATTTCGTATTCTGATGGCTCTTGCCTGGGTGTTGAT
GAAAGGGTCATCGACGCACAGCTTCTGTTAGTTGGAACTACCCGTGTACC
GTTTCAATTTGGCTGACGGTGTAACCCCGGATTGTTATTATTGCAACGTG
TCATGCAGGCGGTGCCAGAATAACGTCGGCGGCACCAGCAGTGAAGAAGG
TGAGCGCATGTATTTAAAGCTGCAATAGGTGTAGAAAGTGGAAGTGTTGA
GGTCAACATAGAATCGTGTAGTTGACAATGAATATAGTGCTGCTTTTGCT
TCACCGCTTGGTTTATTATTTTTCGCAGTTTGAGGTTGCCGTTTTTCCAG
GCGTGCCCCGTGTAGAAACCTTCAACACCGCTATACGCGTTGCCCCGTTC
GCCTATTTTCCGATTTTGCTGTTTCCACGTACATATGGACATTTACAGCC
GCGACTTCATCCGGTGGTGCCATACCCGGACATGGCCGTGCCACCGTGGC
AGTCAAGGTGAGCTTTCAATGCCAGAGGTGAAATCCCTCTTGTTGGCAGC
AAGTGTTTATGACATCAGGTGGAAGGCCTGCCAGTCTAGCCCTTTTGTAG
GCGTTAAGCCCTGTTTTTACCTGCTCGACGTGTGACTGCGCTGTACAGGC
CGACGAATCAGACATTTCCGACGATGAAGAGGAGGAAGACGATAGGATGC
CACCTAACTACGAGGAGGGTTCAGTGGGGGGGGGCATGGATCAGGAGAGG
CGCGAGGACGAGAATGATGAGGTGCGGTGTAGTGTCCACGCTTGTGGCCC
ATCTCGCAGTGCTGAGATTGGGAAAAACAACCGGAAGCTGCCTCAAATGC
TCGTATCCCTTCTCTTTGGCATCGTCGTCAGTACGCCTGTCACTGCGGCG
CGCTACAGCTGGATCTCTTGGTTCGGGTTGATGACCCCTCGGGGCAAGGT
CAGATTGTGACGATTCCACTAGTGAGCCGCCGCGAAAAAGGATCCGGATG
GTGCGTCTCTGTAACTCTTGCTACCTTTGTTCCCTCTCGGTTGCCGCCCT
GGCTGTACTTGGAAGTGGGAGACACGTGGGGACTGTCCACCTGGACTTCC
CAAGGCTCTCACGACTAGACCTCAGGAGCGCTCAGTCTATTTACGGGCCG
TACTGCAGGCAACCGAACACCCCCCCCCCCTCCGTCTCTTCCGCGTTTGT
GCGAGTTTGGACGACAACACAATCATGGTTCCTACTCTACTCCGTATTTC
AGTTTATCGTGTTTTTGCTGTATGTTACCTTATCCATGTTTTGCTGGCTT
TCTTTGACAGACCAAACCTGGAGAAGGTGAGAGGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7229:617..5153+

>mRNA_L-elsbetiae_contig7229.16083.1 ID=mRNA_L-elsbetiae_contig7229.16083.1|Name=mRNA_L-elsbetiae_contig7229.16083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig7229:617..5153+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGCAGTGAAAGATCACCTGAAAGATTCGTCGGAGAAGCTCAGGCT
CGCCTTCTCCGACCTCAAAGACGTCGATCAGGAAGTCGCAGCTCTCACAG
CCGGTGTGGGCGACCTCCCTCTGTCGGAAGCGGCCGCGAGGGTGTCGCAA
GGGGCAACAATGGCGGTAGGGGTGGCATCGAGAGTCTTGAAAGCGGCGGA
GGTGGCGGAGGCGGCTGCCGGCAAAGCAGCGGCGGCTGTGATAGCGGCCC
GCGACACAAAGGCAGCGGTAGAACAGGCGTCGGCAGCAGCAGAACACCAG
TTGGCAGCAGCAGCAGAGGCGGCCGCGGTAGCAGCCCAGAAGAGAGAGGT
GGCGGCGGTGAAAGCGGCAGGATTCGAAGTAAAGATCCAGCCACTTGTGC
TGGTTAACCACAGATGGCAGCAGTGAAAGATCACCTGAAAGATTCGTCGG
AGAAGCTCAGGCTCGCCTTCTCCGACCTCAAAGACGTCGATCAGGAAGTC
GCAGCTCTCACAGCCGGTGTGGGCGACCTCCCTCTGTCGGAAGCGGCCGC
GAGGGTGTCGCAAGGGGCAACAATGGCGGTAGGGGTGGCATCGAGAGTCT
TGAAAGCGGCGGAGGTGGCGGAGGCGGCTGCCGGCAAAGCAGCGGCGGCT
GTGATAGCGGCCCGCGACACAAAGGCAGCGGTAGAACAGGCGTCGGCAGC
AGCAGAACACCAGTTGGCAGCAGCAGCAGAGGCGGCCGCGGTAGCAGCCC
AGAAGAGAGAGGTGGCGGCGGTGAAAGCGGCAGGATTCGAAGTAAAGATC
CAGCCACTTGTGCTGGTTAACCACAGGCGGTGCCAGAATAACGTCGGCGG
CACCAGCAGTGAAGAAGGCGGTGCCAGAATAACGTCGGCGGCACCAGCAG
TGAAGAAGCCGCGACTTCATCCGGTGGTGCCATACCCGGACATGGCCGTG
CCACCGTGGCAGTCAAGCCGCGACTTCATCCGGTGGTGCCATACCCGGAC
ATGGCCGTGCCACCGTGGCAGTCAAGGCCGACGAATCAGACATTTCCGAC
GATGAAGAGGAGGAAGACGATAGGATGCCACCTAACTACGAGGAGGGTTC
AGTGGGGGGGGGCATGGATCAGGAGAGGCGCGAGGACGAGAATGATGAGG
CCGACGAATCAGACATTTCCGACGATGAAGAGGAGGAAGACGATAGGATG
CCACCTAACTACGAGGAGGGTTCAGTGGGGGGGGGCATGGATCAGGAGAG
GCGCGAGGACGAGAATGATGAGACCAAACCTGGAGAAGGTGAGAGGGGGA
CCAAACCTGGAGAAGGTGAGAGGGGG
back to top