mRNA_L-elsbetiae_contig7225.16080.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7225.16080.1
Unique NamemRNA_L-elsbetiae_contig7225.16080.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7225.16080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7225contigL-elsbetiae_contig7225:6991..7710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size282
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7225.16080.1prot_L-elsbetiae_contig7225.16080.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7225 6999..7710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.763872-UTR-L-elsbetiae_contig7225:6990..69981622816804.763872-UTR-L-elsbetiae_contig7225:6990..6998Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7225 6991..6998 +
1691683826.3928263-UTR-L-elsbetiae_contig7225:6990..69981691683826.3928263-UTR-L-elsbetiae_contig7225:6990..6998Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7225 6991..6998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.77399-CDS-L-elsbetiae_contig7225:6998..70861622816804.77399-CDS-L-elsbetiae_contig7225:6998..7086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7225 6999..7086 +
1691683826.4059157-CDS-L-elsbetiae_contig7225:6998..70861691683826.4059157-CDS-L-elsbetiae_contig7225:6998..7086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7225 6999..7086 +
1622816804.7840037-CDS-L-elsbetiae_contig7225:7525..77101622816804.7840037-CDS-L-elsbetiae_contig7225:7525..7710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7225 7526..7710 +
1691683826.4146078-CDS-L-elsbetiae_contig7225:7525..77101691683826.4146078-CDS-L-elsbetiae_contig7225:7525..7710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7225 7526..7710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7225.16080.1

>prot_L-elsbetiae_contig7225.16080.1 ID=prot_L-elsbetiae_contig7225.16080.1|Name=mRNA_L-elsbetiae_contig7225.16080.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MLCAGIPRPSLILIAASILAPSRGIVAFGGLRNPLLFSAPLPSSTSAAHR
RRRAAPSASTGGRACRTCSGLRVSSGVRAMSASSAAQDQEQ
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mRNA from alignment at L-elsbetiae_contig7225:6991..7710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7225.16080.1 ID=mRNA_L-elsbetiae_contig7225.16080.1|Name=mRNA_L-elsbetiae_contig7225.16080.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig7225:6991..7710+ (Laminarionema elsbetiae ELsaHSoW15)
CGAACAGCATGTTGTGCGCAGGGATACCGAGACCCTCGCTGATCTTGATC
GCAGCAAGCATATTGGCACCCTCGAGAGGAATTGTAGCATTTGGAGGTAC
GTTTTTGATGTGTGTGTTTTCAAAGATGCGGCGGAATGAGGCTCATGTAG
TGGTTATTCAACATGCAGCTCTAATATCTAGATACAGCTACAGGCCGTAG
TAGCTTGCAGCCTCTCCCTGCCCGTATGGGCTCACGCTATGCGTCCACAT
CCACCTTGGTTGGCTCACAGATCAAGATAAAAATACAGTAAATCAGCCGT
TCTCCTACCGAACCATCTCCGTTGATTTTTCCTGCGGCATGTAGTAGCCA
ATGATGTAGCACTATCTACATACATATGTAGTCACAGGCTATTCTCGATC
GGTGTGAAAAGGTGTCGCAACAGCGGCTCGCTGTTAACTTCTTGTGGAGC
CTATCTGCGGCGCCCTCCCAGCATCGCAAAAATCTCCACAAAGAAACACA
AAACACCCTCTTTTTCGACCACCGCCGACCGGCAGGATTGCGAAACCCCC
TCCTCTTCTCGGCTCCGCTGCCATCCTCCACCTCCGCGGCACACCGACGG
CGTCGCGCGGCGCCCAGCGCAAGCACGGGGGGCCGCGCGTGCCGAACATG
TAGCGGCCTGCGCGTTTCCTCGGGAGTTCGCGCCATGTCTGCTTCTTCCG
CCGCTCAGGACCAAGAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7225:6991..7710+

>mRNA_L-elsbetiae_contig7225.16080.1 ID=mRNA_L-elsbetiae_contig7225.16080.1|Name=mRNA_L-elsbetiae_contig7225.16080.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig7225:6991..7710+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGTGCGCAGGGATACCGAGACCCTCGCTGATCTTGATCGCAGCAAG
CATATTGGCACCCTCGAGAGGAATTGTAGCATTTGGAGATGTTGTGCGCA
GGGATACCGAGACCCTCGCTGATCTTGATCGCAGCAAGCATATTGGCACC
CTCGAGAGGAATTGTAGCATTTGGAGGATTGCGAAACCCCCTCCTCTTCT
CGGCTCCGCTGCCATCCTCCACCTCCGCGGCACACCGACGGCGTCGCGCG
GCGCCCAGCGCAAGCACGGGGGGCCGCGCGTGCCGAACATGTAGCGGCCT
GCGCGTTTCCTCGGGAGTTCGCGCCATGTCTGCTTCTTCCGCCGCTCAGG
ACCAAGAGCAGGATTGCGAAACCCCCTCCTCTTCTCGGCTCCGCTGCCAT
CCTCCACCTCCGCGGCACACCGACGGCGTCGCGCGGCGCCCAGCGCAAGC
ACGGGGGGCCGCGCGTGCCGAACATGTAGCGGCCTGCGCGTTTCCTCGGG
AGTTCGCGCCATGTCTGCTTCTTCCGCCGCTCAGGACCAAGAGCAG
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