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Homology
BLAST of mRNA_L-elsbetiae_contig7223.16076.1 vs. uniprot
Match: D7FUZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ4_ECTSI) HSP 1 Score: 147 bits (370), Expect = 5.880e-38 Identity = 84/127 (66.14%), Postives = 95/127 (74.80%), Query Frame = 1
Query: 19 VLAEVPYSSGVLVALDPTRPTVFKITVGGGQGEQAGGGSG------PPTTVLVLGAIDGRQRDVLALTLRGRRLAALGPELAGAVDDYPEETKAQQAEENYLELKAAAAHFAKAYDEDGVSAAEQAG 381
VLAE YS GVLV L+P RPTV ++TVG GQG +A G PP VL+LGA+DG QRDVLALTLRGRR AALGP + VDDYPEETKA QA E+YLELKAAAA+FA AYDEDG SA ++G
Sbjct: 257 VLAEGRYSPGVLVTLEPARPTVLRLTVGRGQGGEAAAAVGVRQAPTPPAVVLLLGAVDGIQRDVLALTLRGRRQAALGPGVT--VDDYPEETKAHQAHEDYLELKAAAANFASAYDEDGTSATSRSG 381
BLAST of mRNA_L-elsbetiae_contig7223.16076.1 vs. uniprot
Match: A0A6H5JZQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ7_9PHAE) HSP 1 Score: 144 bits (364), Expect = 3.070e-36 Identity = 83/127 (65.35%), Postives = 94/127 (74.02%), Query Frame = 1
Query: 19 VLAEVPYSSGVLVALDPTRPTVFKITVGGGQGEQAGGGSG------PPTTVLVLGAIDGRQRDVLALTLRGRRLAALGPELAGAVDDYPEETKAQQAEENYLELKAAAAHFAKAYDEDGVSAAEQAG 381
VLAE YSSGVLV L+P RPT ++TVG QG +A G PP VL+LGA+DG QRDVLALTLRGRR AALGP + VDDYPEETKA QA E+YLELKAAAA+FA AYDEDG SA ++G
Sbjct: 707 VLAEGRYSSGVLVTLEPARPTALRLTVGRRQGGEAAAAVGVSQAPTPPAVVLLLGAVDGIQRDVLALTLRGRRQAALGPGIT--VDDYPEETKAHQAHEDYLELKAAAANFASAYDEDGTSATSKSG 831
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 642 |
| Cds size | 639 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816804.3297517-CDS-L-elsbetiae_contig7223:465..660 | 1622816804.3297517-CDS-L-elsbetiae_contig7223:465..660 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7223 466..660 - |
| 1691683826.0640473-CDS-L-elsbetiae_contig7223:465..660 | 1691683826.0640473-CDS-L-elsbetiae_contig7223:465..660 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7223 466..660 - |
| 1622816804.3409786-CDS-L-elsbetiae_contig7223:1061..1217 | 1622816804.3409786-CDS-L-elsbetiae_contig7223:1061..1217 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7223 1062..1217 - |
| 1691683826.0740397-CDS-L-elsbetiae_contig7223:1061..1217 | 1691683826.0740397-CDS-L-elsbetiae_contig7223:1061..1217 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7223 1062..1217 - |
| 1622816804.3521774-CDS-L-elsbetiae_contig7223:2052..2164 | 1622816804.3521774-CDS-L-elsbetiae_contig7223:2052..2164 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7223 2053..2164 - |
| 1691683826.0853648-CDS-L-elsbetiae_contig7223:2052..2164 | 1691683826.0853648-CDS-L-elsbetiae_contig7223:2052..2164 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7223 2053..2164 - |
| 1622816804.362953-CDS-L-elsbetiae_contig7223:2446..2622 | 1622816804.362953-CDS-L-elsbetiae_contig7223:2446..2622 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7223 2447..2622 - |
| 1691683826.098464-CDS-L-elsbetiae_contig7223:2446..2622 | 1691683826.098464-CDS-L-elsbetiae_contig7223:2446..2622 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7223 2447..2622 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7223.16076.1 >prot_L-elsbetiae_contig7223.16076.1 ID=prot_L-elsbetiae_contig7223.16076.1|Name=mRNA_L-elsbetiae_contig7223.16076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=213bp
AVAEAGVLAEVPYSSGVLVALDPTRPTVFKITVGGGQGEQAGGGSGPPTT
VLVLGAIDGRQRDVLALTLRGRRLAALGPELAGAVDDYPEETKAQQAEEN
YLELKAAAAHFAKAYDEDGVSAAEQAGSSTEDEDDDDDDDDDDDDGEQEP
DSGSYYDTSEDDGEETGEESTTDGETGGRGARYSSSNGGGGGGGGGGGAT
TRGYFSSGMVEGA back to topmRNA from alignment at L-elsbetiae_contig7223:464..2622- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig7223.16076.1 ID=mRNA_L-elsbetiae_contig7223.16076.1|Name=mRNA_L-elsbetiae_contig7223.16076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2159bp|location=Sequence derived from alignment at L-elsbetiae_contig7223:464..2622- (Laminarionema elsbetiae ELsaHSoW15)
GCTGTGGCCGAGGCGGGGGTTTTGGCCGAGGTTCCGTACTCGTCTGGTGT
GCTCGTGGCGCTGGACCCCACACGGCCGACGGTGTTCAAGATCACGGTCG
GGGGGGGGCAGGGAGAGCAGGCTGGCGGCGGAAGCGGCCCCCCTACTACT
GTCTTGGTCTTGGGAGCGATAGACGGGTGAGAGTGGGGACGGAGTTAAGC
AACACGCTCGGTGCGGTTTGCGTTATTGAGTGAGAGTGGTAGATACTGCT
CTGCTACGGTCCCCGTGCGTGATAAGCTACGTACGCGCCGCCTCTTTTGG
AGACAAGAGTACGTAGCGGGGGCGCGGAGAGGGGCGTTGGAGTTTATGAC
TTAAAGAGTGCTGAATATTGCCGCGATTGGCTGTGACCCCCCCCCCCCCC
GCCGCCGCCGCCCTCGCGCGCTTCTCTTTGCCTTGGCCGGTCCCGAAATG
TTCATCAGACGACAACGGGACGTGCTTGCGCTGACGCTGAGAGGGCGCAG
GCTGGCCGCCCTGGGCCCCGAGTTGGCCGGCGCTGTCGACGACTATCCCG
AGGAAACCAAGGCTCAGCAGGCAAGCCAAAGGCAGTATCGATCTCGGCAC
CATTCGTGTCTGTCACTTGCCATCTCTTACATACATATAGGATGTTTTGG
ACTAGAGAGCTAATGTGAGAAACAACAACAACAACAACAACAACAACAAA
CTTGGACAGGCAAAACTCGCTCCTAGACTGCTTTCTCTAGGCACTGAGTG
CACGCTACTGTGCTGCAGGGATAACATACTTTGTGGCGTCTTTTCGGCAC
GCTTGTATGGGCTGACCGGGTGCTGTGAAAGTATCCGACGCCATTGAGAG
AGACTCCTCACCGGCGACTGTAGTAGGTATGGTAGCTCGTAGTGGAGAGG
CTGCGACTAGAACTAGGACCTGCACGTTTCTTTTTTGACACCGTTTTCGT
GCTTTTCTGGACCCTGCCCGAAGGTGGGGTTGTTTGTTTTCGCCCTGGTT
GTTGTTATACTCTCGCGTCATCATGTTTTTTTTTTTGTCTGCCCCGGCAA
GTCCTCTTCACCCCCGCGGACGCGCAGTTCCTCCGCTACACAGCATGTCA
CGTGGGAGTACAACCTATGCTATTATATAGCCCTTGTTTCTTGTTCGGTG
TGAAACCGCTGGTCTAAAAAAAAAAAGGTGCAGGGATGTTTTCTGACACG
TTAAAATTCGCCGTTTTTCATAGATACATCCATGTGTTGCGTTCTCCACG
TAGCATTGCGGTTTCGGTGTGTGGGTTTCGCCCCACTGCACAGGCGGCAG
CATTCTATTTACGGAGTAGATGTTTCTCGTGACCCTCGCCCCCTCTCGGA
ATGCTCAACGCCGTTCGGTCGCTGCGGCTGTTGCACTGCTGTTGCATTGT
TGCAGGCGGAGGAGAACTACCTGGAGCTAAAGGCCGCAGCGGCGCATTTC
GCCAAGGCGTACGACGAGGACGGCGTGAGCGCGGCGGAGCAGGCCGGCAG
CAGCACGGAAGACGAAGACGACGACGATGATGACGACGACGACGACGATG
ATGGAGAGCAGGCGAGAGACAGACTGACGCTGCCGAAGGACCGGTTAGAA
AAGCGGAGACAGTGTGGCTGGCGTGTGTTGCGTGCTGCACACAATCGCGT
GTAAAGGGCGAAGAGGGGGGGGCAGGGCGAGGGCTGTCCACCGTCGTCGT
CGGTCAGAGTCGCTATCGCACACGGTTGTTTGTCAGGAAGAACCGCCTGG
TTGGAGCTGTTGAGGGACTCAAGAGCAGAATGCTGCGTCGGTGGAGGCGT
TGCTCGAAAGTGGCGCAAACGCTTTCGGAAGAGACGAGCGGTGCAACTGC
AACACGGGGTTTCGCGGTTCGCGGACAGACGGGACTAATCCTCCCGCCCC
CCCCCCCTCTCTCTCTCTCGTTGTCTGTGCTTGTGATGGACTATATTTAC
GTACACATGCAGGAGCCAGATTCTGGAAGCTACTACGACACCTCGGAGGA
CGACGGCGAGGAAACGGGGGAGGAGTCCACCACCGACGGAGAAACCGGGG
GAAGAGGTGCGAGATACTCCTCTTCGAACGGCGGTGGCGGCGGCGGTGGC
GGCGGCGGCGGCGCTACCACCCGAGGGTATTTTTCGTCGGGGATGGTCGA
AGGAGCGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig7223:464..2622- >mRNA_L-elsbetiae_contig7223.16076.1 ID=mRNA_L-elsbetiae_contig7223.16076.1|Name=mRNA_L-elsbetiae_contig7223.16076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1278bp|location=Sequence derived from alignment at L-elsbetiae_contig7223:464..2622- (Laminarionema elsbetiae ELsaHSoW15)
GCTGTGGCCGAGGCGGGGGTTTTGGCCGAGGTTCCGTACTCGTCTGGTGT
GCTCGTGGCGCTGGACCCCACACGGCCGACGGTGTTCAAGATCACGGTCG
GGGGGGGGCAGGGAGAGCAGGCTGGCGGCGGAAGCGGCCCCCCTACTACT
GTCTTGGTCTTGGGAGCGATAGACGGGCTGTGGCCGAGGCGGGGGTTTTG
GCCGAGGTTCCGTACTCGTCTGGTGTGCTCGTGGCGCTGGACCCCACACG
GCCGACGGTGTTCAAGATCACGGTCGGGGGGGGGCAGGGAGAGCAGGCTG
GCGGCGGAAGCGGCCCCCCTACTACTGTCTTGGTCTTGGGAGCGATAGAC
GGACGACAACGGGACGTGCTTGCGCTGACGCTGAGAGGGCGCAGGCTGGC
CGCCCTGGGCCCCGAGTTGGCCGGCGCTGTCGACGACTATCCCGAGGAAA
CCAAGGCTCAGCAGACGACAACGGGACGTGCTTGCGCTGACGCTGAGAGG
GCGCAGGCTGGCCGCCCTGGGCCCCGAGTTGGCCGGCGCTGTCGACGACT
ATCCCGAGGAAACCAAGGCTCAGCAGGCGGAGGAGAACTACCTGGAGCTA
AAGGCCGCAGCGGCGCATTTCGCCAAGGCGTACGACGAGGACGGCGTGAG
CGCGGCGGAGCAGGCCGGCAGCAGCACGGAAGACGAAGACGACGACGATG
ATGACGACGACGACGACGATGATGGAGAGCAGGCGGAGGAGAACTACCTG
GAGCTAAAGGCCGCAGCGGCGCATTTCGCCAAGGCGTACGACGAGGACGG
CGTGAGCGCGGCGGAGCAGGCCGGCAGCAGCACGGAAGACGAAGACGACG
ACGATGATGACGACGACGACGACGATGATGGAGAGCAGGAGCCAGATTCT
GGAAGCTACTACGACACCTCGGAGGACGACGGCGAGGAAACGGGGGAGGA
GTCCACCACCGACGGAGAAACCGGGGGAAGAGGTGCGAGATACTCCTCTT
CGAACGGCGGTGGCGGCGGCGGTGGCGGCGGCGGCGGCGCTACCACCCGA
GGGTATTTTTCGTCGGGGATGGTCGAAGGAGCGGAGCCAGATTCTGGAAG
CTACTACGACACCTCGGAGGACGACGGCGAGGAAACGGGGGAGGAGTCCA
CCACCGACGGAGAAACCGGGGGAAGAGGTGCGAGATACTCCTCTTCGAAC
GGCGGTGGCGGCGGCGGTGGCGGCGGCGGCGGCGCTACCACCCGAGGGTA
TTTTTCGTCGGGGATGGTCGAAGGAGCG back to top
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