mRNA_L-elsbetiae_contig7219.16068.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7219.16068.1
Unique NamemRNA_L-elsbetiae_contig7219.16068.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7219.16068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7219contigL-elsbetiae_contig7219:7308..8531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size389
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7219.16068.1prot_L-elsbetiae_contig7219.16068.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7219 7323..8481 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816803.6339417-UTR-L-elsbetiae_contig7219:7307..73221622816803.6339417-UTR-L-elsbetiae_contig7219:7307..7322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7219 7308..7322 -
1691683825.6478279-UTR-L-elsbetiae_contig7219:7307..73221691683825.6478279-UTR-L-elsbetiae_contig7219:7307..7322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7219 7308..7322 -
1622816803.6789641-UTR-L-elsbetiae_contig7219:8481..85311622816803.6789641-UTR-L-elsbetiae_contig7219:8481..8531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7219 8482..8531 -
1691683825.6870403-UTR-L-elsbetiae_contig7219:8481..85311691683825.6870403-UTR-L-elsbetiae_contig7219:8481..8531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7219 8482..8531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816803.6456227-CDS-L-elsbetiae_contig7219:7322..74411622816803.6456227-CDS-L-elsbetiae_contig7219:7322..7441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7219 7323..7441 -
1691683825.6623545-CDS-L-elsbetiae_contig7219:7322..74411691683825.6623545-CDS-L-elsbetiae_contig7219:7322..7441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7219 7323..7441 -
1622816803.6628766-CDS-L-elsbetiae_contig7219:8276..84811622816803.6628766-CDS-L-elsbetiae_contig7219:8276..8481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7219 8277..8481 -
1691683825.6774385-CDS-L-elsbetiae_contig7219:8276..84811691683825.6774385-CDS-L-elsbetiae_contig7219:8276..8481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7219 8277..8481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7219.16068.1

>prot_L-elsbetiae_contig7219.16068.1 ID=prot_L-elsbetiae_contig7219.16068.1|Name=mRNA_L-elsbetiae_contig7219.16068.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MRAPPPASWQSDLSAILSAAAPAAAPAAAPIGAPLVGGWVDGGNPTAFLG
GLGGAAGDGGARDGRRRSDKEKEGGSSSRKDRPSKKSSKSSSSKASSSKE
KKKRSRG*
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mRNA from alignment at L-elsbetiae_contig7219:7308..8531-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7219.16068.1 ID=mRNA_L-elsbetiae_contig7219.16068.1|Name=mRNA_L-elsbetiae_contig7219.16068.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1224bp|location=Sequence derived from alignment at L-elsbetiae_contig7219:7308..8531- (Laminarionema elsbetiae ELsaHSoW15)
CGGCGTCGCCGACGACCGTGCCCCCGGCGCCGGTGGCAGCGGGGACGGCG
ATGAGAGCGCCCCCCCCAGCATCGTGGCAGAGCGACCTGTCGGCGATCTT
GTCCGCCGCCGCCCCCGCCGCGGCACCAGCGGCGGCGCCAATAGGAGCGC
CTTTGGTAGGGGGGTGGGTTGATGGCGGCAACCCGACAGCATTTCTGGGG
GGTTTGGGGGGCGCCGCAGGCGATGGTGGCGCTCGGGACGGCCGTCGAAG
AAGCGGTGAGTATTTTTATTTCCGCTTTTTTTTTTCTCCCCTGTTTTTAC
TTTTAATTCGCCAGTGCAATAGTAAAAATGTTTACCTGGTAAATGAGTGG
GACACAAGGACAGGCTCAGTCGGAGAACTACTATTTTTCGCCATGCACGT
ACGTCGATGCACTCAACTCATCTCTCGACTAGACGGCGGGCTGAACTACC
GCAGTCGGCCATTGCTACAGAGTACCCACCTGGGAGTAATACACCTGTAC
GTTTTATGTGTATCACGGCGCGTACAGTCACAGCTCTCCCCGGTCTCGGG
GTCGGGATTTGACACCCTATTCCGGGGGGGTGGCGACCTGCGTGGTAACA
CGGTCAGTCAGTCGTGCTCTCTCTCTCCCTCGTGTGTCACGGCCGGTCTT
GTTTTTTAAACCTTGCGCGGTGGGGCGGTTCGCGGGTTGCATATGTGTGT
GTGTAGAATCAAAGCTTTGAGTGCGTGTGCATCGATTCGTGGTGCGTGCG
TGTGTGTGTGTATGTTGTTTTGTGCATCGATTCCGCTGACAAGCATGATG
TGATGGATGATTTTGACCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTTTT
CTTTTCTTTTTTTTTTTTTTTTTTTTTGTGTGGTGGTTTTTGTGGCGGGG
GGGGCGGGGACAAANNNNNNNNNNGTGGGTGGGTGTGTGTGTGTTTTTTT
TTTTGGCCATCGTTCCCGCTCAAAAGCATGATGTGGTGGATGTTTTTCCC
CCCCCCCCCCCCCCCGTTCGCCCGTATTTATTTCCGTCTCGTTTTTTTTC
CTTCCTTGGGGGTGCTGCTGTTCGCGCGAAACGCGTGCAGACAAAGAGAA
GGAGGGCGGCTCTTCGAGCAGGAAGGACAGGCCGTCCAAGAAGTCTTCCA
AGTCTTCCTCCTCCAAGGCTTCCTCTTCCAAGGAGAAGAAAAAGAGGAGC
AGGGGCTGAGAGACGCTAGACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7219:7308..8531-

>mRNA_L-elsbetiae_contig7219.16068.1 ID=mRNA_L-elsbetiae_contig7219.16068.1|Name=mRNA_L-elsbetiae_contig7219.16068.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig7219:7308..8531- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGCGCCCCCCCCAGCATCGTGGCAGAGCGACCTGTCGGCGATCTT
GTCCGCCGCCGCCCCCGCCGCGGCACCAGCGGCGGCGCCAATAGGAGCGC
CTTTGGTAGGGGGGTGGGTTGATGGCGGCAACCCGACAGCATTTCTGGGG
GGTTTGGGGGGCGCCGCAGGCGATGGTGGCGCTCGGGACGGCCGTCGAAG
AAGCGATGAGAGCGCCCCCCCCAGCATCGTGGCAGAGCGACCTGTCGGCG
ATCTTGTCCGCCGCCGCCCCCGCCGCGGCACCAGCGGCGGCGCCAATAGG
AGCGCCTTTGGTAGGGGGGTGGGTTGATGGCGGCAACCCGACAGCATTTC
TGGGGGGTTTGGGGGGCGCCGCAGGCGATGGTGGCGCTCGGGACGGCCGT
CGAAGAAGCGACAAAGAGAAGGAGGGCGGCTCTTCGAGCAGGAAGGACAG
GCCGTCCAAGAAGTCTTCCAAGTCTTCCTCCTCCAAGGCTTCCTCTTCCA
AGGAGAAGAAAAAGAGGAGCAGGGGCTGAACAAAGAGAAGGAGGGCGGCT
CTTCGAGCAGGAAGGACAGGCCGTCCAAGAAGTCTTCCAAGTCTTCCTCC
TCCAAGGCTTCCTCTTCCAAGGAGAAGAAAAAGAGGAGCAGGGGCTGA
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