mRNA_L-elsbetiae_contig7219.16066.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7219.16066.1
Unique NamemRNA_L-elsbetiae_contig7219.16066.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7219.16066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7219contigL-elsbetiae_contig7219:623..3198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size488
Cds size486
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7219.16066.1prot_L-elsbetiae_contig7219.16066.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7219 623..3198 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816803.5576944-CDS-L-elsbetiae_contig7219:622..6931622816803.5576944-CDS-L-elsbetiae_contig7219:622..693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7219 623..693 -
1691683825.6078968-CDS-L-elsbetiae_contig7219:622..6931691683825.6078968-CDS-L-elsbetiae_contig7219:622..693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7219 623..693 -
1622816803.5727282-CDS-L-elsbetiae_contig7219:980..12281622816803.5727282-CDS-L-elsbetiae_contig7219:980..1228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7219 981..1228 -
1691683825.6176884-CDS-L-elsbetiae_contig7219:980..12281691683825.6176884-CDS-L-elsbetiae_contig7219:980..1228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7219 981..1228 -
1622816803.5852556-CDS-L-elsbetiae_contig7219:1386..15001622816803.5852556-CDS-L-elsbetiae_contig7219:1386..1500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7219 1387..1500 -
1691683825.6271472-CDS-L-elsbetiae_contig7219:1386..15001691683825.6271472-CDS-L-elsbetiae_contig7219:1386..1500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7219 1387..1500 -
1622816803.5980291-CDS-L-elsbetiae_contig7219:3145..31981622816803.5980291-CDS-L-elsbetiae_contig7219:3145..3198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7219 3146..3198 -
1691683825.6369421-CDS-L-elsbetiae_contig7219:3145..31981691683825.6369421-CDS-L-elsbetiae_contig7219:3145..3198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7219 3146..3198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7219.16066.1

>prot_L-elsbetiae_contig7219.16066.1 ID=prot_L-elsbetiae_contig7219.16066.1|Name=mRNA_L-elsbetiae_contig7219.16066.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
TGTDNGGGSSSGAGNNSSVNHANEFSSLWHTDREGVRGTWYEVNHRQTGT
NWRFETRTTADDFVTSGEAWKYVRENTSPGVGNGANAEAPPVVPASGPME
PAQANPLPRSGSESTGSELVQVGQVSEMGHEERAAVVEEQPAVGRLLGAL
TATLNQVHDGGG
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mRNA from alignment at L-elsbetiae_contig7219:623..3198-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7219.16066.1 ID=mRNA_L-elsbetiae_contig7219.16066.1|Name=mRNA_L-elsbetiae_contig7219.16066.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2576bp|location=Sequence derived from alignment at L-elsbetiae_contig7219:623..3198- (Laminarionema elsbetiae ELsaHSoW15)
ACGGGGACCGACAACGGAGGCGGATCTTCGTCGGGAGCTGGAAATAACAG
CAGGCATGGTGATGTTTGTTTTTTGAGGAAGCCTCCACTCTGTCAGCACA
ACCTACGTATGTATAAGTACCTTAAGGTTCAGCAATCTTTCCCGTAGTTT
GAAATCTGGCAAAAGCAGGGAGAGAGATTCCAGGAGAGAATCCGAACCCA
AACTTCGCGGTATCTCCCACAAAAAATGGCGGTAGATTCCTCTCCGGCTG
TCCTCTCTCACCCAAAAATCGACGTTTGTTTGCGGTTTGAAACCAGAATG
CTTTCCATTTTTTCTCGGTCAATCCAGCGTCTGTGCTGTCTTGGGGTAGC
TTGATCTGTTCCTATAAACACAGAGAGCAACATCTTATCTGGCGCACTGA
CACAGCCAAACGCACACCGAGAATACGCCCTCTTTGTGTGTGGGCTAAAA
GCGCCACACACGCGCGCGGGGTAGACAGCAGCGAGGGTCGGCCATGGAGC
GCTCGGGGTCTTTGGAGACGGGATTTTCGGCAGAGCACACCTTATATGAA
CCTTGGATGAACATCGTCCGGGCACAGCAGTAGCGGTGCAGAGTAGCTTT
CGATCTGGAGAAATTTGTACTTTCCAACCGTCTCAATTCGGCCAAATTTT
GGTCGCACTGGTCATGCTTTGCTGCGCGAAAAAAACATACACGCCGTGCG
AACCAACAGATACAGCAGACACACGAAGATAGCCACGACAACTCTCTTAA
AGAAAAGGGTACTGAGGACAGCCGACCTCGTTGCGCCAGATGTGAATTTC
CGATCGTAGACACACGTCGTTATTGTACTGGTTTCAGCGGCAGAACAACT
AGCACCCGCAGTCATTTCCGCGGAACTTCAAGTTGGATCCTGAACCTTAA
CCTGCAAATAAGTGTGTTGCTGTTTTCGACCACCCCCTGCTTCCCATATC
TCGACCGAGAAGCCGACTGCTGTGTGACCACGCAGTGTGACAAGCAACAG
TTTCGTGCACGGTCGCCGAGCCCAATCAATCATCATATATCCCTTCCGCT
GGTTTTGACGTTTTCACCACGCTCGGTAAACGTCCAACGTGACGGCAACC
ATGAGGAAACGGCCGAAACGAGACGCCAACCATAGAGCTACAGGCGGCGG
GGGGTCAGCGTGCGTGTGAATTGAAACTCAACCGTTCTGTCGTTCGCGTC
GTCTGTGTTACGCCTTTGCCAGCATTCCGGAGTATTGAGCTGTTCGTGGC
ATTCGTTGCCAAATCAAACCGATGGCCAACATACCTGCGCTAGCGAGCGT
TTGCTCACTACTGGTTCCACCTCTTAGCGTAGAGTAGGCGACGCTGACCC
TTGCTCCCTGTGCGGAGGTATATCCTGGGCTTTCAGAAATCAATAGCCAG
ACGTCGAATGCTTCTAATCTTAAGGCCTCTTTCCGATTGGACGATCGGCT
TCACAGCCGATCCATACCGTGATATCTAGGGCTTCGCTCGCCCACGCGAC
ACGTAGAGCGAGATGTGGTGAAACCCAACGGTGTTCATCATACAATTATG
TAGTAAAGTTGAACAAGCTGTTCAAGCCCCTGTTGTTGTGGAAGTTACCG
CGCAGCTAGTCTTTGTTTACCTGTTCGTAACTGGTCAACGACCCGTTTCG
ACCCCAAGCTCTCCCTTCACCCCCATTCTGCGCTTGCCTCTGCAACAGCG
TAAACCACGCGAACGAGTTTTCATCCCTTTGGCACACCGACCGTGAAGGA
GTTCGCGGCACGTGGTATGAAGTGAACCACCGACAGACAGGAACCAACTG
GCGATTCGAAACGTGAGTGTTGCAAGGATGACGAGTGTTGGTGTCCAGTG
GTGGGTGTTTTGCGTTTTTCAGGGGTGGCGGGTTAACCACTCATAGCATC
CGCGCTGAAGGCAGGCTGCAACACTCTTCACGAGCCCTGTTTTTTTCGTG
CGTGCGTGATAACATTGCAGGAGGACAACGGCCGACGATTTCGTCACCTC
CGGTGAGGCGTGGAAATATGTCAGAGAAAATACGTCTCCCGGAGTGGGCA
ACGGAGCGAACGCGGAAGCACCGCCGGTGGTGCCGGCCTCAGGGCCGATG
GAGCCTGCCCAGGCAAACCCATTGCCTCGTTCAGGGTCTGAATCAACTGG
GAGCGAGCTGGTGCAGGTTGGGCAGGTGTCTGAGATGGGGCACGAGGAAC
GGGCCGCTGTAGTGGAAGGTGAGAAGGATTGGGCAACAACACGAGGGGGA
GCGTGCACCCGATGGAGGTACATCGCCCAACAGCGGAAAACACATTTTCG
CGTTTACACGCCCTGAGAGAGATAGATAGAGGGGGAGAGAGCGAGCTATC
CTTGATATCCACGCGATGCTGTCTCTCGGAAGAAGCCTGGTCAGTCTTCC
CTTCCCGTGCATCGGCTTGTTGGTTACCACACTGACTCACACGTACATGC
GTCTCATTTCTTCTCCCGGCGCGTGGTTTGGTTGACGTGTTTTTTCGCCC
ACCAGAACAACCAGCGGTAGGTCGGCTCCTGGGTGCCTTGACTGCGACTT
TGAACCAGGTACATGACGGAGGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7219:623..3198-

>mRNA_L-elsbetiae_contig7219.16066.1 ID=mRNA_L-elsbetiae_contig7219.16066.1|Name=mRNA_L-elsbetiae_contig7219.16066.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig7219:623..3198- (Laminarionema elsbetiae ELsaHSoW15)
ACGGGGACCGACAACGGAGGCGGATCTTCGTCGGGAGCTGGAAATAACAG
CAGACGGGGACCGACAACGGAGGCGGATCTTCGTCGGGAGCTGGAAATAA
CAGCAGCGTAAACCACGCGAACGAGTTTTCATCCCTTTGGCACACCGACC
GTGAAGGAGTTCGCGGCACGTGGTATGAAGTGAACCACCGACAGACAGGA
ACCAACTGGCGATTCGAAACCGTAAACCACGCGAACGAGTTTTCATCCCT
TTGGCACACCGACCGTGAAGGAGTTCGCGGCACGTGGTATGAAGTGAACC
ACCGACAGACAGGAACCAACTGGCGATTCGAAACGAGGACAACGGCCGAC
GATTTCGTCACCTCCGGTGAGGCGTGGAAATATGTCAGAGAAAATACGTC
TCCCGGAGTGGGCAACGGAGCGAACGCGGAAGCACCGCCGGTGGTGCCGG
CCTCAGGGCCGATGGAGCCTGCCCAGGCAAACCCATTGCCTCGTTCAGGG
TCTGAATCAACTGGGAGCGAGCTGGTGCAGGTTGGGCAGGTGTCTGAGAT
GGGGCACGAGGAACGGGCCGCTGTAGTGGAAGGAGGACAACGGCCGACGA
TTTCGTCACCTCCGGTGAGGCGTGGAAATATGTCAGAGAAAATACGTCTC
CCGGAGTGGGCAACGGAGCGAACGCGGAAGCACCGCCGGTGGTGCCGGCC
TCAGGGCCGATGGAGCCTGCCCAGGCAAACCCATTGCCTCGTTCAGGGTC
TGAATCAACTGGGAGCGAGCTGGTGCAGGTTGGGCAGGTGTCTGAGATGG
GGCACGAGGAACGGGCCGCTGTAGTGGAAGAACAACCAGCGGTAGGTCGG
CTCCTGGGTGCCTTGACTGCGACTTTGAACCAGGTACATGACGGAGGTGG
GAACAACCAGCGGTAGGTCGGCTCCTGGGTGCCTTGACTGCGACTTTGAA
CCAGGTACATGACGGAGGTGGG
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