mRNA_L-elsbetiae_contig7218.16065.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7218.16065.1
Unique NamemRNA_L-elsbetiae_contig7218.16065.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7218.16065.1 vs. uniprot
Match: D8LLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV0_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 5.300e-36
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 2 
Query:    2 LATVGEDCFMNVWELPKCGQGGPSGQVGLLATSRVDNRLLTGVRFLVDGSHRIIALAYDFDHLQMWHKL 208
            LATVGED F+NVWELPKCGQ GPSGQVGL+ATSRVDNRLLTGV+FLVDGSHRII LAYD DHLQ+WHKL
Sbjct:  204 LATVGEDLFLNVWELPKCGQEGPSGQVGLVATSRVDNRLLTGVQFLVDGSHRIIGLAYDCDHLQIWHKL 272
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BLAST of mRNA_L-elsbetiae_contig7218.16065.1 vs. uniprot
Match: A0A5D6YIF9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIF9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.640e-5
Identity = 28/66 (42.42%), Postives = 37/66 (56.06%), Query Frame = 2 
Query:    2 LATVGEDCFMNVWELPKCGQGGPSGQVGLLATSRVDNRLLTGVRFLVDGSHRIIALAYDFDHLQMW 199
            +A+VGED F+N+WEL         G V L ++  V N LL GV F    S  +I  AYD  HL++W
Sbjct:  264 VASVGEDTFLNIWELA-------GGHVRLASSHAVPNDLLAGVAFAAPRS--VITAAYDTSHLKLW 320
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BLAST of mRNA_L-elsbetiae_contig7218.16065.1 vs. uniprot
Match: A0A2D4BSA3_PYTIN (Dynein light chain 2B putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSA3_PYTIN)

HSP 1 Score: 51.6 bits (122), Expect = 3.060e-5
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 2 
Query:    2 LATVGEDCFMNVWELPKCGQGGPSGQVGLLATSRVDNRLLTGVRFLVDGSHRIIALAYDFDHLQMW 199
            + +VGED FMNVWEL    +   + ++ L+++  V N LLTGV F+  G+  ++  AYD  HL++W
Sbjct:  262 VVSVGEDTFMNVWELSGKKE---APRIQLVSSHCVSNDLLTGVVFV--GAKSVMTAAYDTTHLKLW 322
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7218.16065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLV0_ECTSI5.300e-3688.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D6YIF9_9STRA1.640e-542.42Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4BSA3_PYTIN3.060e-540.91Dynein light chain 2B putative n=1 Tax=Pythium ins... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7218contigL-elsbetiae_contig7218:5467..6690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size346
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7218.16065.1prot_L-elsbetiae_contig7218.16065.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7218 5495..6558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816803.484557-UTR-L-elsbetiae_contig7218:5466..54941622816803.484557-UTR-L-elsbetiae_contig7218:5466..5494Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7218 5467..5494 +
1691683825.5574858-UTR-L-elsbetiae_contig7218:5466..54941691683825.5574858-UTR-L-elsbetiae_contig7218:5466..5494Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7218 5467..5494 +
1622816803.5221589-UTR-L-elsbetiae_contig7218:6558..66901622816803.5221589-UTR-L-elsbetiae_contig7218:6558..6690Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7218 6559..6690 +
1691683825.5950212-UTR-L-elsbetiae_contig7218:6558..66901691683825.5950212-UTR-L-elsbetiae_contig7218:6558..6690Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7218 6559..6690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816803.4982777-CDS-L-elsbetiae_contig7218:5494..55451622816803.4982777-CDS-L-elsbetiae_contig7218:5494..5545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7218 5495..5545 +
1691683825.5713491-CDS-L-elsbetiae_contig7218:5494..55451691683825.5713491-CDS-L-elsbetiae_contig7218:5494..5545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7218 5495..5545 +
1622816803.510223-CDS-L-elsbetiae_contig7218:6423..65581622816803.510223-CDS-L-elsbetiae_contig7218:6423..6558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7218 6424..6558 +
1691683825.5836086-CDS-L-elsbetiae_contig7218:6423..65581691683825.5836086-CDS-L-elsbetiae_contig7218:6423..6558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7218 6424..6558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7218.16065.1

>prot_L-elsbetiae_contig7218.16065.1 ID=prot_L-elsbetiae_contig7218.16065.1|Name=mRNA_L-elsbetiae_contig7218.16065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
MNVWELPKCGQGGPSGQVGLLATSRVDNRLLTGVRFLVDGSHRIIALAYD
FDHLQMWHKLD*
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mRNA from alignment at L-elsbetiae_contig7218:5467..6690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7218.16065.1 ID=mRNA_L-elsbetiae_contig7218.16065.1|Name=mRNA_L-elsbetiae_contig7218.16065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1224bp|location=Sequence derived from alignment at L-elsbetiae_contig7218:5467..6690+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGGCAACGGTAGGGGAAGACTGTTTTATGAACGTGTGGGAGCTGCCTA
AGTGTGGGCAGGGAGGACCCTCCGGCCAGGCGAGTCACTAGGCCTTGCAC
GGCCCACCTGCTTGGTAGTCTATTGAACAGCACTCGTATATTCTCGTGGC
TTCTCCTCTGCCGTTCGTTGCCGCCCCCGTGTACTTACTCTTAAAAGTTA
AATGTTTCACGGATACGACTTTTGCGTACATACGAGAATCCTGCTTTGCA
TCGCAATGTAGTGTAGAGACCCCTGAGCTTGCCGAACCGTATCGAACGGG
AGGTTGGGTATGCGGCCCTTACCCGCGGCAAGGTTTCGAACGTGGAGTTG
CACCTCAGTCTAGACATTGAAGACTGATGCCCCTGTTGGTCAAGTCTAAA
CCAGCTGTCACCTTCTCTAGACCCCCCTTGACGGAATTGCAACTTATAGA
TATTACTTTGTGTCACCAATACACAAGAATGGACTGGCCGTTGGGATCGA
TTGCTATGTAAATGGTAGGGTTAGCCTTGAGCTGTTGATCTAGCCCGTGA
AGAGTGGTGGATGAAAAGCCGATCCTTGGTTGTGTGTTCCTAAGCCGTCC
TATGAAGCAACACAAATTGATTTGACCAAGTATTTAGATAAGCGCGAGTA
GATGATGATGTCTGAAGGAGGAACGAAATCCCAGACAACGAGTCTAGACG
GGCGTATTGCTTATGGAAGGGGGGAACCCTGATCTAGAAGAAAACTCATT
TCAATCGAACACCGAGACGCACCTTCTAAAACTACATAATCTATGGCAGT
ACTAGTGTATGTAAAGCGCACACGTTGACGTGTATCTAGTCTAGATACAT
CCTTCCGTAGATTCGATCGGGAATAATAACCAAGCTTAACCCTTCAGGCA
TGGTGCGTATCTCACCACTCGGCTCTGCTTGCTTACTCACGTTAAACACG
CAACCAGGTAGGATTGCTGGCCACGTCGCGTGTCGACAATCGCCTGTTGA
CCGGGGTGCGCTTCTTGGTGGATGGTAGCCATCGAATCATCGCACTCGCC
TACGACTTCGACCACTTGCAGATGTGGCACAAGCTCGACTGATTGTTCAA
ACGGAGCTATCCATACGATGCACGCATTCGTCTAGACCGAGGGGGAGAGC
CAATCGGACACTGCACGCTTTACCGGCGTGCCAGGGGGCGCCAGTGGCGG
CACACTTTTAAATTAACATTCTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7218:5467..6690+

>mRNA_L-elsbetiae_contig7218.16065.1 ID=mRNA_L-elsbetiae_contig7218.16065.1|Name=mRNA_L-elsbetiae_contig7218.16065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig7218:5467..6690+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGTGTGGGAGCTGCCTAAGTGTGGGCAGGGAGGACCCTCCGGCCA
GATGAACGTGTGGGAGCTGCCTAAGTGTGGGCAGGGAGGACCCTCCGGCC
AGGTAGGATTGCTGGCCACGTCGCGTGTCGACAATCGCCTGTTGACCGGG
GTGCGCTTCTTGGTGGATGGTAGCCATCGAATCATCGCACTCGCCTACGA
CTTCGACCACTTGCAGATGTGGCACAAGCTCGACTGAGTAGGATTGCTGG
CCACGTCGCGTGTCGACAATCGCCTGTTGACCGGGGTGCGCTTCTTGGTG
GATGGTAGCCATCGAATCATCGCACTCGCCTACGACTTCGACCACTTGCA
GATGTGGCACAAGCTCGACTGA
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