mRNA_L-elsbetiae_contig721.16061.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig721.16061.1
Unique NamemRNA_L-elsbetiae_contig721.16061.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig721.16061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig721contigL-elsbetiae_contig721:32434..32894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size461
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig721.16061.1prot_L-elsbetiae_contig721.16061.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig721 32470..32847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.8604643-UTR-L-elsbetiae_contig721:32433..324691622816802.8604643-UTR-L-elsbetiae_contig721:32433..32469Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig721 32434..32469 +
1691683825.0974305-UTR-L-elsbetiae_contig721:32433..324691691683825.0974305-UTR-L-elsbetiae_contig721:32433..32469Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig721 32434..32469 +
1622816802.8846362-UTR-L-elsbetiae_contig721:32847..328941622816802.8846362-UTR-L-elsbetiae_contig721:32847..32894Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig721 32848..32894 +
1691683825.1199312-UTR-L-elsbetiae_contig721:32847..328941691683825.1199312-UTR-L-elsbetiae_contig721:32847..32894Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig721 32848..32894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.8743715-CDS-L-elsbetiae_contig721:32469..328471622816802.8743715-CDS-L-elsbetiae_contig721:32469..32847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig721 32470..32847 +
1691683825.1087818-CDS-L-elsbetiae_contig721:32469..328471691683825.1087818-CDS-L-elsbetiae_contig721:32469..32847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig721 32470..32847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig721.16061.1

>prot_L-elsbetiae_contig721.16061.1 ID=prot_L-elsbetiae_contig721.16061.1|Name=mRNA_L-elsbetiae_contig721.16061.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MYAQVQRVRDSRNSRAVEKQTRATYIPSPARRLSRKALSLARWSGFLCVS
LEGRGGEGSGASLTRGRRAHRRRRRSSGQVFGGWLEYERLFRPRGQVGRS
GACETFRLGSVLFYFVFSFSFFISS*
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mRNA from alignment at L-elsbetiae_contig721:32434..32894+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig721.16061.1 ID=mRNA_L-elsbetiae_contig721.16061.1|Name=mRNA_L-elsbetiae_contig721.16061.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=461bp|location=Sequence derived from alignment at L-elsbetiae_contig721:32434..32894+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTACAATAGGCCTTTTCCGTTTGGCCAACGAGGTATGTATGCGCAGGT
TCAGAGGGTAAGAGACAGTCGCAACTCAAGGGCTGTTGAAAAACAGACTC
GAGCTACATACATACCTTCGCCCGCCCGCCGTCTGTCTCGGAAGGCTCTC
TCGCTGGCTCGTTGGAGCGGTTTCTTGTGTGTGTCATTAGAGGGGCGTGG
CGGCGAAGGTTCGGGTGCAAGTCTGACTCGCGGGCGGCGCGCGCACAGGA
GGAGGCGGCGGAGCAGCGGCCAGGTTTTCGGTGGTTGGTTGGAATACGAG
CGCTTATTCAGGCCCCGGGGTCAGGTGGGTCGATCGGGTGCGTGTGAGAC
TTTTCGCCTGGGTTCGGTTCTCTTCTATTTTGTTTTTTCTTTTTCTTTTT
TTATTTCTTCTTGAGAGAAAGAAGGGAGGAGTGGGGAGTGCGTGCCGTGC
GCAAAACCTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig721:32434..32894+

>mRNA_L-elsbetiae_contig721.16061.1 ID=mRNA_L-elsbetiae_contig721.16061.1|Name=mRNA_L-elsbetiae_contig721.16061.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig721:32434..32894+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGCGCAGGTTCAGAGGGTAAGAGACAGTCGCAACTCAAGGGCTGT
TGAAAAACAGACTCGAGCTACATACATACCTTCGCCCGCCCGCCGTCTGT
CTCGGAAGGCTCTCTCGCTGGCTCGTTGGAGCGGTTTCTTGTGTGTGTCA
TTAGAGGGGCGTGGCGGCGAAGGTTCGGGTGCAAGTCTGACTCGCGGGCG
GCGCGCGCACAGGAGGAGGCGGCGGAGCAGCGGCCAGGTTTTCGGTGGTT
GGTTGGAATACGAGCGCTTATTCAGGCCCCGGGGTCAGGTGGGTCGATCG
GGTGCGTGTGAGACTTTTCGCCTGGGTTCGGTTCTCTTCTATTTTGTTTT
TTCTTTTTCTTTTTTTATTTCTTCTTGAATGTATGCGCAGGTTCAGAGGG
TAAGAGACAGTCGCAACTCAAGGGCTGTTGAAAAACAGACTCGAGCTACA
TACATACCTTCGCCCGCCCGCCGTCTGTCTCGGAAGGCTCTCTCGCTGGC
TCGTTGGAGCGGTTTCTTGTGTGTGTCATTAGAGGGGCGTGGCGGCGAAG
GTTCGGGTGCAAGTCTGACTCGCGGGCGGCGCGCGCACAGGAGGAGGCGG
CGGAGCAGCGGCCAGGTTTTCGGTGGTTGGTTGGAATACGAGCGCTTATT
CAGGCCCCGGGGTCAGGTGGGTCGATCGGGTGCGTGTGAGACTTTTCGCC
TGGGTTCGGTTCTCTTCTATTTTGTTTTTTCTTTTTCTTTTTTTATTTCT
TCTTGA
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