mRNA_L-elsbetiae_contig7207.16056.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7207.16056.1
Unique NamemRNA_L-elsbetiae_contig7207.16056.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7207.16056.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 4.680e-10
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  229 LQALVRMGLLTPNLDSPMHSCWTNTKHCNAKTARPCQVC 345
            + ALVRMGLLT NLDSPMHS WTN KH NAKT R CQ C
Sbjct:  117 ITALVRMGLLTANLDSPMHSLWTNQKHHNAKTERACQAC 155
[Close]
BLAST of mRNA_L-elsbetiae_contig7207.16056.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 4.150e-9
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:  235 ALVRMGLLTPNLDSPMHSCWTNTKHCNAKTARPCQVC 345
            ALVR+GLLT NLDSP+HS WTN KH NAKT R CQ C
Sbjct:   25 ALVRLGLLTANLDSPLHSLWTNQKHHNAKTERACQAC 61
[Close]
BLAST of mRNA_L-elsbetiae_contig7207.16056.1 vs. uniprot
Match: A0A6H5KPX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX4_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.150e-7
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:  232 QALVRMGLLTPNLDSPMHSCWTNTKHCNAKTARPCQVC 345
            +ALVR+GLLT NLDSPMHS W N KH NAKT   CQ C
Sbjct:   21 EALVRLGLLTANLDSPMHSLWANQKHHNAKTT--CQAC 56
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7207.16056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZI4_ECTSI4.680e-1076.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWW9_ECTSI4.150e-975.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPX4_9PHAE3.150e-771.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7207contigL-elsbetiae_contig7207:4347..4692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.4531143-CDS-L-elsbetiae_contig7207:4346..46911622816802.4531143-CDS-L-elsbetiae_contig7207:4346..4691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7207 4347..4691 +
1691683824.8147326-CDS-L-elsbetiae_contig7207:4346..46911691683824.8147326-CDS-L-elsbetiae_contig7207:4346..4691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7207 4347..4691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7207.16056.1prot_L-elsbetiae_contig7207.16056.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7207 4347..4691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7207.16056.1

>prot_L-elsbetiae_contig7207.16056.1 ID=prot_L-elsbetiae_contig7207.16056.1|Name=mRNA_L-elsbetiae_contig7207.16056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
LEPGFIVWNLLVGNSPPSSSRGGDRCVRTLELMFCPGRTCESFVQTAHRA
LFCAPANLLTLGCLYRYILVSCFCSLLQALVRMGLLTPNLDSPMHSCWTN
TKHCNAKTARPCQVC
back to top

mRNA from alignment at L-elsbetiae_contig7207:4347..4692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7207.16056.1 ID=mRNA_L-elsbetiae_contig7207.16056.1|Name=mRNA_L-elsbetiae_contig7207.16056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=346bp|location=Sequence derived from alignment at L-elsbetiae_contig7207:4347..4692+ (Laminarionema elsbetiae ELsaHSoW15)
CTAGAACCTGGTTTTATAGTGTGGAATTTGCTCGTGGGAAACAGCCCGCC
TTCGTCATCACGTGGGGGCGATCGTTGTGTCCGTACATTGGAACTGATGT
TTTGCCCTGGACGCACATGCGAGTCATTCGTCCAAACTGCGCATCGCGCA
TTATTTTGTGCGCCCGCCAACCTGCTGACACTTGGTTGTTTGTACCGTTA
CATATTGGTATCTTGCTTCTGTTCTCTGTTGCAGGCGTTGGTAAGGATGG
GGTTGCTCACGCCAAACCTTGATTCGCCAATGCACAGCTGCTGGACAAAC
ACCAAGCACTGCAACGCCAAGACTGCACGCCCTTGCCAAGTCTGCA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7207:4347..4692+

>mRNA_L-elsbetiae_contig7207.16056.1 ID=mRNA_L-elsbetiae_contig7207.16056.1|Name=mRNA_L-elsbetiae_contig7207.16056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig7207:4347..4692+ (Laminarionema elsbetiae ELsaHSoW15)
CTAGAACCTGGTTTTATAGTGTGGAATTTGCTCGTGGGAAACAGCCCGCC
TTCGTCATCACGTGGGGGCGATCGTTGTGTCCGTACATTGGAACTGATGT
TTTGCCCTGGACGCACATGCGAGTCATTCGTCCAAACTGCGCATCGCGCA
TTATTTTGTGCGCCCGCCAACCTGCTGACACTTGGTTGTTTGTACCGTTA
CATATTGGTATCTTGCTTCTGTTCTCTGTTGCAGGCGTTGGTAAGGATGG
GGTTGCTCACGCCAAACCTTGATTCGCCAATGCACAGCTGCTGGACAAAC
ACCAAGCACTGCAACGCCAAGACTGCACGCCCTTGCCAAGTCTGCCTAGA
ACCTGGTTTTATAGTGTGGAATTTGCTCGTGGGAAACAGCCCGCCTTCGT
CATCACGTGGGGGCGATCGTTGTGTCCGTACATTGGAACTGATGTTTTGC
CCTGGACGCACATGCGAGTCATTCGTCCAAACTGCGCATCGCGCATTATT
TTGTGCGCCCGCCAACCTGCTGACACTTGGTTGTTTGTACCGTTACATAT
TGGTATCTTGCTTCTGTTCTCTGTTGCAGGCGTTGGTAAGGATGGGGTTG
CTCACGCCAAACCTTGATTCGCCAATGCACAGCTGCTGGACAAACACCAA
GCACTGCAACGCCAAGACTGCACGCCCTTGCCAAGTCTGC
back to top