mRNA_L-elsbetiae_contig7207.16054.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7207.16054.1
Unique NamemRNA_L-elsbetiae_contig7207.16054.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7207.16054.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE)

HSP 1 Score: 273 bits (699), Expect = 3.910e-82
Identity = 132/230 (57.39%), Postives = 169/230 (73.48%), Query Frame = 3 
Query:  300 LPDLGHLHEGLPEYTDANAKCFDGAETKFVYDALGGKYFPWSHLTEMLISIWALVHRPSRRS*QMLLDLLRFVDGDGARFDPRHVPRSSEHFISSMRERLPLLKVFERIIEGKNGQPSRAMDIALNLQLERIFSCPRVVEEITKNYGEHVMTADERATNSVPDEHITPVATELVDRALETYMNGETLKSSSHMNIDCVLAADGERVMIGDTIIARLPSSGHPKPCRLAGM 989
            + DL  +H+ LPEY DA  +C DG + +F+ DAL  ++FPW +L E LI +WA+ HRPSR+S Q+LL L  FVD  G RF P   PRS EH IS MR+RLP L VFER I  KNG+ ++A+DI  N+ L+R+ SCPRVVEE  KN+G HVM+  ERA N++PDEHITPVATEL D+A ETYMNG+ ++S SHM + CV A DG +VM+GDTI+AR+P  G P+PCRLA +
Sbjct:   23 MDDLKDMHKTLPEYKDA--ECVDGVDPQFLIDALRSRHFPWRNLMEQLIGVWAVTHRPSRKSLQILLGLFSFVDRQGYRFRPEDAPRSVEHLISRMRKRLPHLPVFERTINDKNGETAKAIDIPFNVLLQRMLSCPRVVEEWRKNFGGHVMSRSERAKNNLPDEHITPVATELADKACETYMNGKLVRSFSHMGLQCVTAGDGVQVMVGDTIMARVPDCGTPQPCRLAAI 250
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BLAST of mRNA_L-elsbetiae_contig7207.16054.1 vs. uniprot
Match: A0A6H5JE27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE27_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.720e-53
Identity = 114/267 (42.70%), Postives = 154/267 (57.68%), Query Frame = 3 
Query:  258 GGGDPVPAVDEIGGLPD-LGHLHEGLPEYTDANAKCFDGAETKFVYDALGGKYFPWSHLTEMLISIWALVHRPSRRS*QMLLDLLRFVDGDGARFDPRHVPRSSEHFISSMRERLPLLKVFERIIEGKNGQPSRAMDIALNLQLERIFSCPRVVEEITKNYGEHVMTADERATNSVPDEHITPVATELVDRALETYMNGETLKSSSHMNIDCVLAADGERVMIGDTIIARLPSSGH-PKPCRLAGMFWRNHHQVYRHAVHLAAGSPG 1052
            G GDP  A D    +P  L HLH+ + EY   NA+  DG +  F   ALG ++FPW++LTEML+S+WA+V RPSR+S QMLLDLLR  D +G RFDPR VP SSEH +S MR RLPLL V  R ++GK                                        D++A   VPD H TP+AT   D A   +M+G+ + +S+HM ++CV   DG R+M+GDT + RLP+ G+ P PCR+A +FW+N  +  R A+ L+ G+ G
Sbjct:  112 GAGDP--ASDGSAKVPPWLEHLHKLIEEYM--NAEVVDGEDLNFAGLALGSRFFPWANLTEMLVSVWAIVCRPSRKSLQMLLDLLRVEDSEGGRFDPRDVPESSEHLVSRMRRRLPLLPVVRREVKGK----------------------------------------DDKAAE-VPDFHFTPIATRESDGARGGFMSGDIMMASAHMGLECVATTDGVRLMVGDTAMVRLPAFGNSPHPCRIAAIFWQNTRKQRRRALELSGGNGG 333
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BLAST of mRNA_L-elsbetiae_contig7207.16054.1 vs. uniprot
Match: A0A6H5KT11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT11_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.640e-18
Identity = 65/211 (30.81%), Postives = 105/211 (49.76%), Query Frame = 3 
Query:  417 PWSHLTEMLISIWALVHRPSRRS*QMLLDLLRFVDG-------DGARFDPRHVPRSSEHFISSMRERLPLLKVFERIIEGKNGQPSRAM-------DIALNLQLERIFSCPRVVEEITKNYGEHVMTADERATNSVPDEHITPVATELVDRALETYMNGETLKSSSHMNIDCVLAADGERVMIGDTIIARL--PSSGHPK--PCRLAGMFW 995
            P+ +LT +L+ ++AL H+ SR     L  +LRFVDG       DG +F+   VP S EHF+S MR+ LPL +V+ R    K  +   A        DI +   +  +   P  +EE+  N G  V+  +E     +  +HI PV T  +  A   +M+G  ++   H+N D  L+  G R+ +G+ ++  L  P +  P   PCR+   ++
Sbjct:   96 PFWNLTTLLLGVFALKHQISRAGMTDLFTILRFVDGVQGDGGGDGRKFETADVPNSGEHFVSRMRQYLPLFEVWVRDAWFKPSKKDPAARTKGKVDDIPIAHVMAFLLKSPAFMEEMLGNPGGAVVDEEESRGIGLSSQHIFPVPTCPIGNARRNWMHGTIVQGQPHLNADGFLSLGGNRIYVGELVMCDLREPRADTPLQVPCRVVRCYF 306
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BLAST of mRNA_L-elsbetiae_contig7207.16054.1 vs. uniprot
Match: D7G6T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T4_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 9.490e-18
Identity = 67/219 (30.59%), Postives = 111/219 (50.68%), Query Frame = 3 
Query:  372 AETKFVYDALGGKYFPWSHLTEMLISIWALVHRPSRRS*QMLLDLLRFVDGDGARF---DPRHVPRSSEHFISSMRERLPLLKVFERIIEG-----KNGQPSR-AMDIALNLQLERIFSCPRVVEEITKNYGEHVMTADERATNSVPDEHITPVATELVDRALETYMNGETLKSSSHMNIDCVLAA-DGER-VMIGDTIIARLPSSGHPKPCRLAGMFW 995
            A  ++   A G   +P+ +L+ +L+S +   ++ SR   + +L++LRFVD DG+RF   D + V    EHF +  R+  PLL+V +R +E      K G+ +  A DI  NL ++R+      +EE+  N G   ++ DE A   +   HI  V  E  D       NGE  +S+ H   D ++   DG+R V + D ++  L      +PCR+  ++W
Sbjct:   81 ANLRYNQKAEGSDTYPFENLSVLLLSQFTSKYKVSRVMLRGMLEMLRFVDDDGSRFNIDDLKDVHH--EHFQARRRKYYPLLQVVKRKVEASATAKKAGETTADAYDIPTNLVVDRLLRSAPSMEEMLSNQGGKQLSRDETAAAGLASTHIFSVPEEKADGTKGNNQNGELARSTPHFGFDGIMVGMDGKRKVYVNDIVMCTLDGVDDAQPCRILAIYW 297
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BLAST of mRNA_L-elsbetiae_contig7207.16054.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.210e-10
Identity = 56/186 (30.11%), Postives = 84/186 (45.16%), Query Frame = 3 
Query:  495 LLDLLRFVDG-------DGARFDPRHVPRSSEHFISSMRERLPLLKVFERIIEGKNGQ--------PSRAMDIALNLQLERIFSCPRVVEEITKNYGEHVMTADERATNSVPDEHITPVATELVDRALETYMNGETLKSSSHMNIDCVLAADGERVMIGDTIIA--RLPSSGHPK--PCRLAGMFW 995
            L ++LRFVDG       +G  FD   VP S EHFIS MRE LPL +V+ R +  K            ++  DI +   L  + +    +EE+ +N G  V              H+ PV T  V  A    M+G  +++ S  N D  L +   R+ +G+  +   R P +  P+  PCR+   F+
Sbjct:    4 LFEILRFVDGKQGDGAGEGRAFDTADVPSSGEHFISRMREYLPLFEVWVRDVRCKPPNRKNPGARTTAKVYDIPITQVLAFLLTSKESMEEVVQNPGGAV--------------HLFPVPTRPVGNARRNNMHGTIVQAMSQFNTDGFLTSGQTRLYVGEVAMCDLRQPGAAQPRQVPCRVVRSFF 175
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7207.16054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5LGI1_9PHAE3.910e-8257.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE27_9PHAE1.720e-5342.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT11_9PHAE5.640e-1830.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6T4_ECTSI9.490e-1830.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K953_9PHAE2.210e-1030.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7207contigL-elsbetiae_contig7207:1171..3510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1154
Cds size663
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7207.16054.1prot_L-elsbetiae_contig7207.16054.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7207 2848..3510 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.487694-UTR-L-elsbetiae_contig7207:1170..13801622816802.487694-UTR-L-elsbetiae_contig7207:1170..1380Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7207 1171..1380 +
1691683824.8262868-UTR-L-elsbetiae_contig7207:1170..13801691683824.8262868-UTR-L-elsbetiae_contig7207:1170..1380Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7207 1171..1380 +
1622816802.503637-UTR-L-elsbetiae_contig7207:2566..28471622816802.503637-UTR-L-elsbetiae_contig7207:2566..2847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7207 2567..2847 +
1691683824.8373473-UTR-L-elsbetiae_contig7207:2566..28471691683824.8373473-UTR-L-elsbetiae_contig7207:2566..2847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7207 2567..2847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.5149012-CDS-L-elsbetiae_contig7207:2847..35101622816802.5149012-CDS-L-elsbetiae_contig7207:2847..3510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7207 2848..3510 +
1691683824.8484182-CDS-L-elsbetiae_contig7207:2847..35101691683824.8484182-CDS-L-elsbetiae_contig7207:2847..3510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7207 2848..3510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7207.16054.1

>prot_L-elsbetiae_contig7207.16054.1 ID=prot_L-elsbetiae_contig7207.16054.1|Name=mRNA_L-elsbetiae_contig7207.16054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
MLLDLLRFVDGDGARFDPRHVPRSSEHFISSMRERLPLLKVFERIIEGKN
GQPSRAMDIALNLQLERIFSCPRVVEEITKNYGEHVMTADERATNSVPDE
HITPVATELVDRALETYMNGETLKSSSHMNIDCVLAADGERVMIGDTIIA
RLPSSGHPKPCRLAGMFWRNHHQVYRHAVHLAAGSPGIDSRVGLEEEKNG
DSSSSSSSSSSSSSSNDGRDD
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mRNA from alignment at L-elsbetiae_contig7207:1171..3510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7207.16054.1 ID=mRNA_L-elsbetiae_contig7207.16054.1|Name=mRNA_L-elsbetiae_contig7207.16054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2340bp|location=Sequence derived from alignment at L-elsbetiae_contig7207:1171..3510+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGTGTGAAAAAACGGTTCGTTCCCACCGAGACGCTCAGCGACACCCG
CGGAGTCGCCTATGTCGGATTGCGAGAGGGATAGGGGCTATCGAGGCTCC
CTGGCTGGAGGATATGGACAGCGATGATGATGACGAAGGGGACCGTGCTT
TAAATCTCGGTGGTGGCTCGGGATCTGGCAGCGACGAGGATCTTGATTCT
TTGAGACGAGGTGTGTGTGTGAGAGAGACCTTTTTTGCAGTGATAGTTAG
GGTTAGATACTACACGCCATACACCATTACTCCATAACGCAGAGGGTGCC
GGCACCAAACGGCACAGTTTCGGACAGCCCTCGGCTAAATATTTCCATCG
TCGCTCCCTTTCGGCACTGGCCGCCTTTGTTACGGAGTAATCGAGCTCTC
AAATTCGATCCAGGGGGTGTGGTATCTTGCGTCACCTTTGCACGCCGCCG
CCCCCTGGATCGAATTTGAGAGCTCGATTACTCCGTAACGAAGAAGGTGC
AACCACCAAACAACACATTTCCGGACAGCCCTCGACTAGATCTTTCCAAC
GCCACCCCTTTCGGCACTGTCATTCTTCTCGCTGGGGAGGAATCGAGCTT
TGAAAATATGTCCACAGGGGTGTGGTATCTTGTGTAACCTACGGTATACT
CCTATATCAGTAGTACCGCCAATATCCTCTGAGCTCGCCCCGCGGGGCGA
ACCTAAGTACGGCGGATGGCAATTTTGGTTAGATACATCTGCAATTGTCG
GGTGGCAGTAATAATAAATAGTAATACATACTCCAATAAAAAACAAAGAC
AAAAAGCCGAGAACTGCAAGGAGTGCCCGATTAGGTACCGTGCATACACA
CGAACCGTCGACACAAACAAACCGCCTCATGGGGCATGCACAAAACAACC
TGGAAAAAGAACGTCCCGGGGCGTTCTCCGAGGTGGGGGTGGGGGGCGAC
ATTACGTCAAAACAAAAAATAACATATTCCCCGGGGCTATCTCAAGGCTG
TATGCTTGTTTCGCGGTGTTTTGAGGATATTACGGTATGTAGTTTGTCTA
CCGCTGAAGTTATAGTTGGTGTCTACCGTGGAGGAGGTCTACCTTGCTCC
CAACCTACCTCCGCACTCCATGCAAGCCCCAACAACATATGTCATATATT
CCTTTTTCATAGAAGACAACACGGGCATGCTATTATTTTCGCCGGTTGGC
CTGACAGAGCGGAGCAGGAAATGCTTTGAACGCCTGTAATGCGGGGAGGT
TATTCATTTCATATCCGAATTTATTTCCGAAGTTTCAATTCAAACCGGCA
TTCATACACGACCCAGGAGGCACGAGAACCGAACAATAAGTCATGTCTTC
CCGCGCGTGTGTCCAATTCCTTTGCTCGCCACACCTACGGGAAAAGATGG
TGATGTACGCGATGAGCGTCAGGGCGAGCCCGGTGGTGACGGGGGGGGCG
GCGACCCCGTACCAGCTGTTGATGAGATCGGTGGGTTGCCTGACTTAGGT
CATCTGCATGAGGGCTTGCCAGAGTATACGGACGCAAATGCGAAGTGCTT
CGATGGAGCTGAAACGAAATTCGTATACGATGCGCTCGGGGGGAAATATT
TCCCATGGTCTCACCTCACCGAGATGCTTATTTCGATATGGGCCCTTGTC
CATCGCCCGTCGAGGAGGTCTTGACAAATGCTCTTGGATTTGCTACGCTT
CGTCGACGGGGATGGTGCTAGGTTTGATCCTCGACATGTCCCCCGTTCAT
CGGAACACTTCATTTCTAGCATGCGGGAGAGGTTACCGCTGCTCAAGGTG
TTTGAACGTATCATCGAGGGGAAGAATGGTCAGCCCTCGCGAGCGATGGA
TATTGCTCTTAACCTGCAGCTAGAGAGGATATTTTCCTGTCCAAGAGTGG
TGGAAGAAATTACTAAGAACTATGGCGAGCATGTGATGACGGCAGACGAG
AGGGCCACTAACAGCGTGCCTGATGAACACATCACTCCTGTTGCCACAGA
GCTTGTCGATAGAGCTCTCGAGACGTACATGAATGGCGAAACACTGAAGT
CGTCCTCGCACATGAACATCGACTGCGTGTTAGCAGCAGACGGCGAGCGG
GTGATGATAGGTGATACAATCATCGCTCGCTTGCCATCCAGTGGGCACCC
GAAGCCGTGTCGTCTTGCTGGAATGTTTTGGCGGAATCACCATCAAGTGT
ACAGACACGCAGTACATCTAGCTGCGGGTAGCCCTGGTATCGACAGCCGC
GTAGGATTGGAAGAGGAGAAGAATGGCGACAGCAGCAGTAGTAGTAGCAG
CAGCAGCAGCAGCAGCAGCAGTAACGATGGCCGCGACGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7207:1171..3510+

>mRNA_L-elsbetiae_contig7207.16054.1 ID=mRNA_L-elsbetiae_contig7207.16054.1|Name=mRNA_L-elsbetiae_contig7207.16054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig7207:1171..3510+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTTGGATTTGCTACGCTTCGTCGACGGGGATGGTGCTAGGTTTGA
TCCTCGACATGTCCCCCGTTCATCGGAACACTTCATTTCTAGCATGCGGG
AGAGGTTACCGCTGCTCAAGGTGTTTGAACGTATCATCGAGGGGAAGAAT
GGTCAGCCCTCGCGAGCGATGGATATTGCTCTTAACCTGCAGCTAGAGAG
GATATTTTCCTGTCCAAGAGTGGTGGAAGAAATTACTAAGAACTATGGCG
AGCATGTGATGACGGCAGACGAGAGGGCCACTAACAGCGTGCCTGATGAA
CACATCACTCCTGTTGCCACAGAGCTTGTCGATAGAGCTCTCGAGACGTA
CATGAATGGCGAAACACTGAAGTCGTCCTCGCACATGAACATCGACTGCG
TGTTAGCAGCAGACGGCGAGCGGGTGATGATAGGTGATACAATCATCGCT
CGCTTGCCATCCAGTGGGCACCCGAAGCCGTGTCGTCTTGCTGGAATGTT
TTGGCGGAATCACCATCAAGTGTACAGACACGCAGTACATCTAGCTGCGG
GTAGCCCTGGTATCGACAGCCGCGTAGGATTGGAAGAGGAGAAGAATGGC
GACAGCAGCAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGTAACGA
TGGCCGCGACGACATGCTCTTGGATTTGCTACGCTTCGTCGACGGGGATG
GTGCTAGGTTTGATCCTCGACATGTCCCCCGTTCATCGGAACACTTCATT
TCTAGCATGCGGGAGAGGTTACCGCTGCTCAAGGTGTTTGAACGTATCAT
CGAGGGGAAGAATGGTCAGCCCTCGCGAGCGATGGATATTGCTCTTAACC
TGCAGCTAGAGAGGATATTTTCCTGTCCAAGAGTGGTGGAAGAAATTACT
AAGAACTATGGCGAGCATGTGATGACGGCAGACGAGAGGGCCACTAACAG
CGTGCCTGATGAACACATCACTCCTGTTGCCACAGAGCTTGTCGATAGAG
CTCTCGAGACGTACATGAATGGCGAAACACTGAAGTCGTCCTCGCACATG
AACATCGACTGCGTGTTAGCAGCAGACGGCGAGCGGGTGATGATAGGTGA
TACAATCATCGCTCGCTTGCCATCCAGTGGGCACCCGAAGCCGTGTCGTC
TTGCTGGAATGTTTTGGCGGAATCACCATCAAGTGTACAGACACGCAGTA
CATCTAGCTGCGGGTAGCCCTGGTATCGACAGCCGCGTAGGATTGGAAGA
GGAGAAGAATGGCGACAGCAGCAGTAGTAGTAGCAGCAGCAGCAGCAGCA
GCAGCAGTAACGATGGCCGCGACGAC
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