mRNA_L-elsbetiae_contig7204.16052.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7204.16052.1
Unique NamemRNA_L-elsbetiae_contig7204.16052.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7204.16052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7204contigL-elsbetiae_contig7204:6802..7691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size560
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7204.16052.1prot_L-elsbetiae_contig7204.16052.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7204 6833..7591 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.2690876-UTR-L-elsbetiae_contig7204:6801..68321622816802.2690876-UTR-L-elsbetiae_contig7204:6801..6832Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7204 6802..6832 +
1691683824.683595-UTR-L-elsbetiae_contig7204:6801..68321691683824.683595-UTR-L-elsbetiae_contig7204:6801..6832Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7204 6802..6832 +
1622816802.299595-UTR-L-elsbetiae_contig7204:7591..76911622816802.299595-UTR-L-elsbetiae_contig7204:7591..7691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7204 7592..7691 +
1691683824.7272606-UTR-L-elsbetiae_contig7204:7591..76911691683824.7272606-UTR-L-elsbetiae_contig7204:7591..7691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7204 7592..7691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.2790282-CDS-L-elsbetiae_contig7204:6832..68761622816802.2790282-CDS-L-elsbetiae_contig7204:6832..6876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7204 6833..6876 +
1691683824.7042513-CDS-L-elsbetiae_contig7204:6832..68761691683824.7042513-CDS-L-elsbetiae_contig7204:6832..6876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7204 6833..6876 +
1622816802.2890797-CDS-L-elsbetiae_contig7204:7206..75911622816802.2890797-CDS-L-elsbetiae_contig7204:7206..7591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7204 7207..7591 +
1691683824.716045-CDS-L-elsbetiae_contig7204:7206..75911691683824.716045-CDS-L-elsbetiae_contig7204:7206..7591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7204 7207..7591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7204.16052.1

>prot_L-elsbetiae_contig7204.16052.1 ID=prot_L-elsbetiae_contig7204.16052.1|Name=mRNA_L-elsbetiae_contig7204.16052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MEAGVFSIGRRGSWSWDWFRVQRQAKEWAGASFAADNQAKPFPVGVTDIA
AIMNPQYRTIGSTRAPALTARARKAAAGVVVLYQTPLCMALCLGIQSGVH
IGRFSAVFRCFRHHLWQPATSSVFAVCRHGCSLSKPGAGRRF*
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mRNA from alignment at L-elsbetiae_contig7204:6802..7691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7204.16052.1 ID=mRNA_L-elsbetiae_contig7204.16052.1|Name=mRNA_L-elsbetiae_contig7204.16052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=890bp|location=Sequence derived from alignment at L-elsbetiae_contig7204:6802..7691+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGTCGAAGCCAAGCCATGCTGCGGTGAAGATGGAGGCGGGGGTGTTTT
CCATCGGACGGCGAGGGAGCTGGAGGTGAGCCGAAAATCAGTGCGCTGCT
GTCTTGATTAACTACGGTAGCCTTTGTTGAGCCGCTGGCCAGGATTGGTC
AAATTGGGAAGCTGAAGTGGCTTGAGATGCAAACGGTGTTCATCGCTGTG
CAGTGGTAAACACACGTGGTAGCGTTGGGAGCGGTTTCGCTACGACGAAG
CTCAGCGCCTGAAGATGCGCATTCAAGACTCTTTTCCGTTGATCCGAACG
ATCGAATCATGGACAGGTTTTGTACGCCAAGAACTGTCGGGTGCAACGTC
GTTGCAGAGTGTGAACGTGATGGACTCATCCCTTATTTTCGCTGATTTTA
TCCAGTTGGGACTGGTTTCGGGTGCAACGCCAAGCGAAAGAATGGGCCGG
GGCAAGTTTCGCGGCAGATAACCAAGCCAAGCCATTCCCTGTGGGAGTCA
CGGACATTGCTGCAATCATGAACCCGCAGTATCGGACGATCGGAAGTACA
AGAGCGCCGGCGTTGACGGCTCGCGCACGGAAAGCAGCAGCAGGAGTCGT
GGTGCTTTATCAGACCCCTCTGTGCATGGCGCTGTGCCTGGGTATTCAGA
GCGGGGTTCACATTGGTCGGTTCTCGGCCGTTTTTCGTTGTTTCCGGCAT
CATCTGTGGCAGCCAGCGACATCGTCTGTTTTTGCTGTCTGCCGACATGG
TTGTTCTCTGTCGAAACCTGGGGCTGGCAGGCGCTTCTGATTGGTCAGCC
AAGATTTTGCAAAACATGTATTTGGTCGTCGGATAAAGGGGGCGTAAGGC
AGCAGCTACGCGGTGCTGAACTTCGGGGGGTGACGTTCAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7204:6802..7691+

>mRNA_L-elsbetiae_contig7204.16052.1 ID=mRNA_L-elsbetiae_contig7204.16052.1|Name=mRNA_L-elsbetiae_contig7204.16052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig7204:6802..7691+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGCGGGGGTGTTTTCCATCGGACGGCGAGGGAGCTGGAGATGGAG
GCGGGGGTGTTTTCCATCGGACGGCGAGGGAGCTGGAGTTGGGACTGGTT
TCGGGTGCAACGCCAAGCGAAAGAATGGGCCGGGGCAAGTTTCGCGGCAG
ATAACCAAGCCAAGCCATTCCCTGTGGGAGTCACGGACATTGCTGCAATC
ATGAACCCGCAGTATCGGACGATCGGAAGTACAAGAGCGCCGGCGTTGAC
GGCTCGCGCACGGAAAGCAGCAGCAGGAGTCGTGGTGCTTTATCAGACCC
CTCTGTGCATGGCGCTGTGCCTGGGTATTCAGAGCGGGGTTCACATTGGT
CGGTTCTCGGCCGTTTTTCGTTGTTTCCGGCATCATCTGTGGCAGCCAGC
GACATCGTCTGTTTTTGCTGTCTGCCGACATGGTTGTTCTCTGTCGAAAC
CTGGGGCTGGCAGGCGCTTCTGATTGGGACTGGTTTCGGGTGCAACGCCA
AGCGAAAGAATGGGCCGGGGCAAGTTTCGCGGCAGATAACCAAGCCAAGC
CATTCCCTGTGGGAGTCACGGACATTGCTGCAATCATGAACCCGCAGTAT
CGGACGATCGGAAGTACAAGAGCGCCGGCGTTGACGGCTCGCGCACGGAA
AGCAGCAGCAGGAGTCGTGGTGCTTTATCAGACCCCTCTGTGCATGGCGC
TGTGCCTGGGTATTCAGAGCGGGGTTCACATTGGTCGGTTCTCGGCCGTT
TTTCGTTGTTTCCGGCATCATCTGTGGCAGCCAGCGACATCGTCTGTTTT
TGCTGTCTGCCGACATGGTTGTTCTCTGTCGAAACCTGGGGCTGGCAGGC
GCTTCTGA
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