mRNA_L-elsbetiae_contig7204.16051.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7204.16051.1
Unique NamemRNA_L-elsbetiae_contig7204.16051.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7204.16051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7204contigL-elsbetiae_contig7204:6138..6789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size654
Cds size411
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.3323112-UTR-L-elsbetiae_contig7204:6137..63781622816802.3323112-UTR-L-elsbetiae_contig7204:6137..6378Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7204 6138..6378 +
1691683824.7366183-UTR-L-elsbetiae_contig7204:6137..63781691683824.7366183-UTR-L-elsbetiae_contig7204:6137..6378Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7204 6138..6378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.3437202-CDS-L-elsbetiae_contig7204:6378..67891622816802.3437202-CDS-L-elsbetiae_contig7204:6378..6789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7204 6379..6789 +
1691683824.7484922-CDS-L-elsbetiae_contig7204:6378..67891691683824.7484922-CDS-L-elsbetiae_contig7204:6378..6789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7204 6379..6789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7204.16051.1prot_L-elsbetiae_contig7204.16051.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7204 6379..6789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7204.16051.1

>prot_L-elsbetiae_contig7204.16051.1 ID=prot_L-elsbetiae_contig7204.16051.1|Name=mRNA_L-elsbetiae_contig7204.16051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MVDVKNRRCAHHGCTKVPSDSVTGTTKREFCTQHDEDGMVHLAASKNRCS
GEVRDGSGSERDRVVVYGIGTDHGAGAGEKRKSRAPSSAQTEDFSSTEQR
GQQESPPPDSRWPACSPKPACSPKPVRSTTWREPSFR
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mRNA from alignment at L-elsbetiae_contig7204:6138..6789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7204.16051.1 ID=mRNA_L-elsbetiae_contig7204.16051.1|Name=mRNA_L-elsbetiae_contig7204.16051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=652bp|location=Sequence derived from alignment at L-elsbetiae_contig7204:6138..6789+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAATGTCACGAGCAAGATGTGCCTCCACGATGGCTGCACCAAGCA
GCCCAGCTTTGGCGTTGCCGGTGGCACAACGGCGGAGGTCTGCTTTGTCC
ACAAGAAGGAGAGGGCATGGCGAACGTGGTCACCAGGAGGTGGAGGCCGT
GTAATCACCCCGCCGGCTGCACCCAGTGGGCGAGCTACGAGGCTGCCAGC
AGCAGGACGGCGAAGCACTGCTGTGCACACAAAAGGACGGGATGGTGGAC
GTCAAGAACAGGAGGTGCGCCCACCATGGTTGCACCAAGGTGCCATCAGA
CAGCGTCACCGGCACTACTAAGAGAGAGTTCTGCACCCAACACGACGAAG
ACGGCATGGTCCACCTCGCGGCGTCAAAGAACAGGTGCAGCGGTGAAGTA
CGGGACGGCAGCGGCAGCGAGCGTGACCGTGTAGTAGTGTACGGCATTGG
GACCGACCACGGTGCTGGGGCCGGCGAAAAGCGGAAGAGCCGTGCTCCTT
CGTCCGCTCAGACGGAGGATTTCTCGAGCACGGAGCAGCGGGGGCAACAA
GAGAGCCCGCCGCCAGACTCCCGCTGGCCCGCCTGTAGCCCCAAGCCCGC
CTGTAGCCCCAAACCCGTCAGAAGCACCACTTGGCGAGAGCCCAGCTTCA
GA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7204:6138..6789+

>mRNA_L-elsbetiae_contig7204.16051.1 ID=mRNA_L-elsbetiae_contig7204.16051.1|Name=mRNA_L-elsbetiae_contig7204.16051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig7204:6138..6789+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGACGTCAAGAACAGGAGGTGCGCCCACCATGGTTGCACCAAGGT
GCCATCAGACAGCGTCACCGGCACTACTAAGAGAGAGTTCTGCACCCAAC
ACGACGAAGACGGCATGGTCCACCTCGCGGCGTCAAAGAACAGGTGCAGC
GGTGAAGTACGGGACGGCAGCGGCAGCGAGCGTGACCGTGTAGTAGTGTA
CGGCATTGGGACCGACCACGGTGCTGGGGCCGGCGAAAAGCGGAAGAGCC
GTGCTCCTTCGTCCGCTCAGACGGAGGATTTCTCGAGCACGGAGCAGCGG
GGGCAACAAGAGAGCCCGCCGCCAGACTCCCGCTGGCCCGCCTGTAGCCC
CAAGCCCGCCTGTAGCCCCAAACCCGTCAGAAGCACCACTTGGCGAGAGC
CCAGCTTCAGAATGGTGGACGTCAAGAACAGGAGGTGCGCCCACCATGGT
TGCACCAAGGTGCCATCAGACAGCGTCACCGGCACTACTAAGAGAGAGTT
CTGCACCCAACACGACGAAGACGGCATGGTCCACCTCGCGGCGTCAAAGA
ACAGGTGCAGCGGTGAAGTACGGGACGGCAGCGGCAGCGAGCGTGACCGT
GTAGTAGTGTACGGCATTGGGACCGACCACGGTGCTGGGGCCGGCGAAAA
GCGGAAGAGCCGTGCTCCTTCGTCCGCTCAGACGGAGGATTTCTCGAGCA
CGGAGCAGCGGGGGCAACAAGAGAGCCCGCCGCCAGACTCCCGCTGGCCC
GCCTGTAGCCCCAAGCCCGCCTGTAGCCCCAAACCCGTCAGAAGCACCAC
TTGGCGAGAGCCCAGCTTCAGA
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