mRNA_L-elsbetiae_contig720.16045.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig720.16045.1
Unique NamemRNA_L-elsbetiae_contig720.16045.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig720.16045.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.320e-20
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:  478 SKYLGVRKEGSRWAAFITRPSVGVEKHLGVFVEDVDAAKAYDKYAKMWIKNPELNFPRVTTNSRVRG 678
            SKYLGVRK+GSRW A+I RPSVG E +LGVF E+VDAAK YDKYA MW+K PE+NFPR  + SR RG
Sbjct: 1439 SKYLGVRKQGSRWVAYIIRPSVGGETNLGVFDEEVDAAKQYDKYANMWLKTPEVNFPRGRSASRFRG 1505
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BLAST of mRNA_L-elsbetiae_contig720.16045.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.470e-11
Identity = 65/194 (33.51%), Postives = 80/194 (41.24%), Query Frame = 1 
Query:  478 SKYLGVRKEGSRWAAFITRPSVGVEKHLGVFVEDVDAAKAYDKYAKMWIKNPELNFPRVTTNSRVRGIAAATATANTGRGXXXXXXXXXXXXXXXXTSALDVERKEKEDDKKGDKQERDGGKISVKDVGGTERGGKKGENQEGGKEKEADPMVVDQAEDQDKREEVTEKAVAPVPLDGLLLVQYLWGRGPGGFG 1059
            SKYLGVRK+GSRW A+I RPSVG E +LGVF E+VDAAK YDKYA              T  S  +     TA A                                                     GG  + G++G           D M V++  ++ + +E  E       LDG+LLVQYLW RG GGFG
Sbjct: 1096 SKYLGVRKQGSRWVAYIIRPSVGGETNLGVFDEEVDAAKQYDKYAN------------TTGGSGKKPPTRMTAAAG----------------------------------------------------GGVRQDGEEG-----------DGMDVEEGVEKVEEDEEAEL------LDGVLLVQYLWARGRGGFG 1208
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig720.16045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE3.320e-2071.64CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI2.470e-1133.51CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig720contigL-elsbetiae_contig720:18946..22163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue2.7e-11
Seed eggNOG ortholog2880.D7G6J0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1143
Cds size1140
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig720.16045.1prot_L-elsbetiae_contig720.16045.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig720 18946..22161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.3155384-CDS-L-elsbetiae_contig720:18945..194271622816801.3155384-CDS-L-elsbetiae_contig720:18945..19427Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 18946..19427 +
1691683823.9568686-CDS-L-elsbetiae_contig720:18945..194271691683823.9568686-CDS-L-elsbetiae_contig720:18945..19427Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 18946..19427 +
1622816801.326688-CDS-L-elsbetiae_contig720:20066..201991622816801.326688-CDS-L-elsbetiae_contig720:20066..20199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 20067..20199 +
1691683823.968963-CDS-L-elsbetiae_contig720:20066..201991691683823.968963-CDS-L-elsbetiae_contig720:20066..20199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 20067..20199 +
1622816801.338824-CDS-L-elsbetiae_contig720:21174..213091622816801.338824-CDS-L-elsbetiae_contig720:21174..21309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 21175..21309 +
1691683823.9787104-CDS-L-elsbetiae_contig720:21174..213091691683823.9787104-CDS-L-elsbetiae_contig720:21174..21309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 21175..21309 +
1622816801.351564-CDS-L-elsbetiae_contig720:21771..221611622816801.351564-CDS-L-elsbetiae_contig720:21771..22161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 21772..22161 +
1691683823.98843-CDS-L-elsbetiae_contig720:21771..221611691683823.98843-CDS-L-elsbetiae_contig720:21771..22161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 21772..22161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig720.16045.1

>prot_L-elsbetiae_contig720.16045.1 ID=prot_L-elsbetiae_contig720.16045.1|Name=mRNA_L-elsbetiae_contig720.16045.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=380bp
AAAAAAAAATAAEGGAREARLPETAAAAPAATAAAREEARGGVKISKEKE
NSAKGGAGAGAAAGVAAAASTTKKPAVAQVGGDLRAAGGRGGAKGSEEKE
SSARDGAGAAAGAGATAASVPKKPAVAEPGSELRAAGARGSGEKEKGKAT
GKGGGSRAGSKYLGVRKEGSRWAAFITRPSVGVEKHLGVFVEDVDAAKAY
DKYAKMWIKNPELNFPRVTTNSRVRGIAAATATANTGRGTTGGSDGGGDK
GGGGKTSALDVERKEKEDDKKGDKQERDGGKISVKDVGGTERGGKKGENQ
EGGKEKEADPMVVDQAEDQDKREEVTEKAVAPVPLDGLLLVQYLWGRGPG
GFGGEPASAAASAAAAAASDVGAAVASLTP
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mRNA from alignment at L-elsbetiae_contig720:18946..22163+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig720.16045.1 ID=mRNA_L-elsbetiae_contig720.16045.1|Name=mRNA_L-elsbetiae_contig720.16045.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3218bp|location=Sequence derived from alignment at L-elsbetiae_contig720:18946..22163+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGGCGGAGGGCGGAGCGAG
AGAGGCACGCCTTCCGGAGACAGCCGCAGCGGCCCCGGCAGCCACCGCCG
CCGCTAGAGAAGAGGCACGGGGAGGGGTGAAGATCTCGAAGGAAAAAGAA
AACTCCGCGAAAGGTGGCGCCGGGGCTGGAGCCGCTGCCGGGGTGGCCGC
TGCCGCGTCGACGACCAAGAAGCCGGCCGTAGCGCAGGTCGGGGGTGATC
TGAGAGCGGCCGGAGGTCGGGGAGGGGCGAAGGGCTCGGAGGAGAAGGAG
AGCTCCGCGAGAGATGGCGCCGGGGCGGCAGCCGGTGCCGGGGCTACTGC
GGCGTCGGTTCCCAAGAAGCCGGCGGTAGCGGAGCCCGGGAGCGAGCTGA
GAGCAGCCGGGGCTCGGGGAAGCGGCGAGAAGGAGAAGGGGAAGGCAACG
GGAAAGGGTGGCGGCAGTAGAGCAGGCTCCAAGTGAGTGGGACCTGCGTG
CCTGTGGCATGACTGGTGCTGCTTTTTTTGTTCGCCCTTTGTGGGTTCGT
TTTTAAATTAAGTGTCGCTCCGCGCCGTCTCTTGCTGATTGATGGTGCCG
CTTCACTTTTTGACTTGTTGCGCATTCGTGTGCAGGTTTGGCTGCTTTAG
GGAGCGTCAATTCGTTGTGGCTCACCACAGACAAAACAACAGAGCGCGCG
GCCAACCAGCAGAGCGCGGTTCCAAGCCTTTTGAACGGCTGCCCCCCCCC
CCCCCCCCGGCACTGACTTTATCAAGGCAGGCCGTGCTTTTTGTCTTGCA
CGCGCGTTCGTTGTCTGCCCCTCCCTCCTCACCGGCAGAGACATGCTTCA
TGAAGGTTTCTCTCTGGTGTCCCTCCCTTCGTATCTAGCGAAGCGGCGTT
TTTCGTGTGTTGTCATCATCGCTCAGGATAGATGAGGTCGATACGGTCGA
TAGGGCGATTGTATGCCGCACCCCTCACGTGCCCATCGTGTGTGCGTTTT
CTTCCACTTTGGTTTTCTGCTCCCGAATCAGCTGTTATCTAAGCATCTAT
GTACCCTTTTGCCCCTCTCCCTCCATACCCCCGCCGCCGTGGCTTTCGTG
GGGCCCCCGCCGGCCCCGCAGGTACTTGGGTGTGCGCAAGGAGGGGTCCC
GGTGGGCCGCCTTCATCACTCGCCCCTCGGTCGGCGTCGAGAAACACCTG
GGCGTGTTCGTCGAGGATGTCGACGCCGCCAAGGCCTACGATAAGTATGC
CAAGGTGGGTTTCGTTGTGCTGTCGATTTATTCACGTACATATGTTCACA
CGTGCCCATCTGAGGGGGAAAGGCGGCTGGGCTCTTCTCGCTTCAAAAAT
TCGAAGGCAAAGCACCGCAGAAGAGCGGGGATGCGGGGGGGAGGAAACCC
TGAGTGTGACTTGACTTACCCCGCGGATTTAGAGGCCTGGCAAGATGCCC
ACCCCCCGCGCGCTGGTTTTAACGTGACGGAAAACAAAAAAAATCACGCG
CGCGATCTCCGCGTACGTACCGTATGGCGCGTCAGACATCCTGGCCGGCT
GTGTGCGAGAGCCCTCACCACGTGGAACAGTAATGGATGGTTGATCATGG
ATGATGCCGGGTGGCACCGGAGCTCGCCAAGAATACAGTAGTTTCTTGCC
TCCCATCCCAAAAGGCATTTTTTTTCTTCTTCTCATGGCGCTCTTGGTGG
TGTGGGTGGTGTGGGTGGAGGGACCTTCCTCGAAGCATACCCAGCAGTGA
ATGAACGATGCGTTCTGCCTTTCTTCCTTTCTTGTTACGGCGGCGAGTTC
TGCGGGGGTTCGATTTCCGCTCGCACACGATCCGCCCCGCAAATGCTCCC
TCGTGCCGTAGGCACGCATCGGACATCCAGAGGAGAACCGCCGCCAGACT
CCGTACCGTCCGCAGCCATCGCAAACGTTATGGCAGCAGCAGCAGCAGCA
GTGTTGTTTTTCTCATGCCGGGTGTCAACAGTCACTTCGCGCGCCGCCCG
CTTGCTCGCTTCCGGGCCCTCACCTCAGCAAGCCCACAGCAAGCAAGCTC
TCGGCAGGAAGAGAAGAGATATAACAGGGTGCGAGGGTGCGGGTGCTTCG
CTACTCCTTCTCCAAAGCCTTTTGTTCTTGCACCGTGATCGACCTCTCGT
TTCTCCTTCTCCAAAGCCTTCTCTTTCTCTTCACTTTCCTGCTCCCCTCG
CGCTCTGTTTTTGTCGCTCGTCTGTGCAGATGTGGATCAAGAACCCCGAG
CTAAACTTTCCTCGGGTAACGACCAACTCTCGCGTCCGAGGCATCGCCGC
CGCCACCGCCACCGCCAACACCGGCAGGGGCACCACCGGCGGCAGTGACG
GCGGCGGGGACAAGGTTCGTCTGCGACTACGGTCTGGCGGTACATTTCAA
GTAGCCAGAGACTCTTTTCGCTTGCCGTATTTAGGTGTCAATGCCGTCGT
CGAGGTCGTCAGCGGCGGCGGCGGCGGCGGCGGCGGCGTCTTCGTTAATG
TTGTGTCGTCGCCGTGGTTGTTGCTGTTGTTGTTGGTGGTGGTGGTACTG
ACTGCCAATGCTCGACTCAACTCTCGGATAAATCAGCTCCAGGGCTGGGC
AGAGGAGGAAGTCACGTGGCAGAGAGAGTCTGGTTTAGTTTTTCTTTTCG
TCTTGTCGTCCTTTTCGGTTTGACTTTGGTATAAAACGTGCGCTCGGAAT
TTCCACGTGCCCGCGCTGTAGTGGGCAGATTTACTCAACCGCTCCCGAAG
ATACGTATTTTTTCTATTCTCGTTGCGGTAATCGACTCCCTTCCCCGTGC
GCTCGCTTCTTTTCCGTGTGCGCCAGGGTGGTGGCGGCAAGACCAGCGCT
CTGGACGTCGAAAGGAAAGAAAAAGAAGACGACAAGAAAGGAGACAAGCA
AGAAAGGGATGGTGGCAAGATCAGCGTTAAGGACGTTGGAGGGACAGAAC
GAGGCGGCAAGAAAGGAGAAAACCAAGAAGGAGGCAAGGAGAAGGAGGCA
GACCCGATGGTTGTCGACCAGGCAGAGGATCAAGACAAGAGAGAAGAAGT
GACAGAGAAGGCCGTCGCGCCTGTGCCGTTGGACGGCCTCCTTCTGGTGC
AGTACCTGTGGGGCAGGGGCCCGGGGGGCTTCGGAGGCGAACCCGCCTCC
GCCGCCGCCAGCGCCGCGGCTGCTGCTGCTAGCGATGTTGGGGCCGCCGT
GGCTTCGCTGACGCCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig720:18946..22163+

>mRNA_L-elsbetiae_contig720.16045.1 ID=mRNA_L-elsbetiae_contig720.16045.1|Name=mRNA_L-elsbetiae_contig720.16045.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2280bp|location=Sequence derived from alignment at L-elsbetiae_contig720:18946..22163+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGGCGGAGGGCGGAGCGAG
AGAGGCACGCCTTCCGGAGACAGCCGCAGCGGCCCCGGCAGCCACCGCCG
CCGCTAGAGAAGAGGCACGGGGAGGGGTGAAGATCTCGAAGGAAAAAGAA
AACTCCGCGAAAGGTGGCGCCGGGGCTGGAGCCGCTGCCGGGGTGGCCGC
TGCCGCGTCGACGACCAAGAAGCCGGCCGTAGCGCAGGTCGGGGGTGATC
TGAGAGCGGCCGGAGGTCGGGGAGGGGCGAAGGGCTCGGAGGAGAAGGAG
AGCTCCGCGAGAGATGGCGCCGGGGCGGCAGCCGGTGCCGGGGCTACTGC
GGCGTCGGTTCCCAAGAAGCCGGCGGTAGCGGAGCCCGGGAGCGAGCTGA
GAGCAGCCGGGGCTCGGGGAAGCGGCGAGAAGGAGAAGGGGAAGGCAACG
GGAAAGGGTGGCGGCAGTAGAGCAGGCTCCAAGCGGCGGCGGCGGCGGCG
GCGGCGGCGACGGCGGCGGAGGGCGGAGCGAGAGAGGCACGCCTTCCGGA
GACAGCCGCAGCGGCCCCGGCAGCCACCGCCGCCGCTAGAGAAGAGGCAC
GGGGAGGGGTGAAGATCTCGAAGGAAAAAGAAAACTCCGCGAAAGGTGGC
GCCGGGGCTGGAGCCGCTGCCGGGGTGGCCGCTGCCGCGTCGACGACCAA
GAAGCCGGCCGTAGCGCAGGTCGGGGGTGATCTGAGAGCGGCCGGAGGTC
GGGGAGGGGCGAAGGGCTCGGAGGAGAAGGAGAGCTCCGCGAGAGATGGC
GCCGGGGCGGCAGCCGGTGCCGGGGCTACTGCGGCGTCGGTTCCCAAGAA
GCCGGCGGTAGCGGAGCCCGGGAGCGAGCTGAGAGCAGCCGGGGCTCGGG
GAAGCGGCGAGAAGGAGAAGGGGAAGGCAACGGGAAAGGGTGGCGGCAGT
AGAGCAGGCTCCAAGTACTTGGGTGTGCGCAAGGAGGGGTCCCGGTGGGC
CGCCTTCATCACTCGCCCCTCGGTCGGCGTCGAGAAACACCTGGGCGTGT
TCGTCGAGGATGTCGACGCCGCCAAGGCCTACGATAAGTATGCCAAGGTA
CTTGGGTGTGCGCAAGGAGGGGTCCCGGTGGGCCGCCTTCATCACTCGCC
CCTCGGTCGGCGTCGAGAAACACCTGGGCGTGTTCGTCGAGGATGTCGAC
GCCGCCAAGGCCTACGATAAGTATGCCAAGATGTGGATCAAGAACCCCGA
GCTAAACTTTCCTCGGGTAACGACCAACTCTCGCGTCCGAGGCATCGCCG
CCGCCACCGCCACCGCCAACACCGGCAGGGGCACCACCGGCGGCAGTGAC
GGCGGCGGGGACAAGATGTGGATCAAGAACCCCGAGCTAAACTTTCCTCG
GGTAACGACCAACTCTCGCGTCCGAGGCATCGCCGCCGCCACCGCCACCG
CCAACACCGGCAGGGGCACCACCGGCGGCAGTGACGGCGGCGGGGACAAG
GGTGGTGGCGGCAAGACCAGCGCTCTGGACGTCGAAAGGAAAGAAAAAGA
AGACGACAAGAAAGGAGACAAGCAAGAAAGGGATGGTGGCAAGATCAGCG
TTAAGGACGTTGGAGGGACAGAACGAGGCGGCAAGAAAGGAGAAAACCAA
GAAGGAGGCAAGGAGAAGGAGGCAGACCCGATGGTTGTCGACCAGGCAGA
GGATCAAGACAAGAGAGAAGAAGTGACAGAGAAGGCCGTCGCGCCTGTGC
CGTTGGACGGCCTCCTTCTGGTGCAGTACCTGTGGGGCAGGGGCCCGGGG
GGCTTCGGAGGCGAACCCGCCTCCGCCGCCGCCAGCGCCGCGGCTGCTGC
TGCTAGCGATGTTGGGGCCGCCGTGGCTTCGCTGACGCCGGGTGGTGGCG
GCAAGACCAGCGCTCTGGACGTCGAAAGGAAAGAAAAAGAAGACGACAAG
AAAGGAGACAAGCAAGAAAGGGATGGTGGCAAGATCAGCGTTAAGGACGT
TGGAGGGACAGAACGAGGCGGCAAGAAAGGAGAAAACCAAGAAGGAGGCA
AGGAGAAGGAGGCAGACCCGATGGTTGTCGACCAGGCAGAGGATCAAGAC
AAGAGAGAAGAAGTGACAGAGAAGGCCGTCGCGCCTGTGCCGTTGGACGG
CCTCCTTCTGGTGCAGTACCTGTGGGGCAGGGGCCCGGGGGGCTTCGGAG
GCGAACCCGCCTCCGCCGCCGCCAGCGCCGCGGCTGCTGCTGCTAGCGAT
GTTGGGGCCGCCGTGGCTTCGCTGACGCCG
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