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Homology
BLAST of mRNA_L-elsbetiae_contig720.16042.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE) HSP 1 Score: 113 bits (282), Expect = 4.230e-27 Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1
Query: 1 RFESFACRNSRCIYCNPPGLPIYMAEWAMCSTRFKLKSGQPPPNVHGKVKKQAQPPRWEREAISTASAAARGG-ARYDEESV 243
RFESFACRNS CIYC PPGLP+YMAEWA+ S RFKLK GQPPP + G+++KQA PPRWEREAI A+A G + DEE++
Sbjct: 810 RFESFACRNSHCIYCKPPGLPLYMAEWAVSSARFKLKGGQPPPTL-GRIQKQAVPPRWEREAIPDGRASASSGVSSRDEEAL 890
BLAST of mRNA_L-elsbetiae_contig720.16042.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI) HSP 1 Score: 112 bits (280), Expect = 7.870e-27 Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 1
Query: 1 RFESFACRNSRCIYCNPPGLPIYMAEWAMCSTRFKLKSGQPPPNVHGKVKKQAQPPRWEREAISTASAAARGGARYDEE 237
RFESFACRNS CIYC PPGLP+YMAEWA+ S RFKLK GQPPP + G+++KQA PPRWEREAI A+A G +E
Sbjct: 448 RFESFACRNSHCIYCKPPGLPLYMAEWAVSSARFKLKGGQPPPTL-GRIQKQAVPPRWEREAIPDGRASAASGVSARDE 525
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 112.5 |
| Seed ortholog evalue | 1.1e-22 |
| Seed eggNOG ortholog | 2880.D7G6J0 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | NAD-dependent histone deacetylase activity (H3-K14 specific) |
| EggNOG OGs | COG0123@1,KOG1343@2759 |
| COG Functional cat. | K |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 287 |
| Cds size | 285 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816801.3840356-CDS-L-elsbetiae_contig720:9855..9953 | 1622816801.3840356-CDS-L-elsbetiae_contig720:9855..9953 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig720 9856..9953 + |
| 1691683823.9997509-CDS-L-elsbetiae_contig720:9855..9953 | 1691683823.9997509-CDS-L-elsbetiae_contig720:9855..9953 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig720 9856..9953 + |
| 1622816801.3970647-CDS-L-elsbetiae_contig720:11228..11310 | 1622816801.3970647-CDS-L-elsbetiae_contig720:11228..11310 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig720 11229..11310 + |
| 1691683824.0095062-CDS-L-elsbetiae_contig720:11228..11310 | 1691683824.0095062-CDS-L-elsbetiae_contig720:11228..11310 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig720 11229..11310 + |
| 1622816801.4113333-CDS-L-elsbetiae_contig720:12141..12246 | 1622816801.4113333-CDS-L-elsbetiae_contig720:12141..12246 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig720 12142..12246 + |
| 1691683824.017617-CDS-L-elsbetiae_contig720:12141..12246 | 1691683824.017617-CDS-L-elsbetiae_contig720:12141..12246 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig720 12142..12246 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig720.16042.1 >prot_L-elsbetiae_contig720.16042.1 ID=prot_L-elsbetiae_contig720.16042.1|Name=mRNA_L-elsbetiae_contig720.16042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
RFESFACRNSRCIYCNPPGLPIYMAEWAMCSTRFKLKSGQPPPNVHGKVK
KQAQPPRWEREAISTASAAARGGARYDEESVGGGGAGSGGRGSGV back to topmRNA from alignment at L-elsbetiae_contig720:9856..12248+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig720.16042.1 ID=mRNA_L-elsbetiae_contig720.16042.1|Name=mRNA_L-elsbetiae_contig720.16042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2393bp|location=Sequence derived from alignment at L-elsbetiae_contig720:9856..12248+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTTCGAGAGCTTTGCCTGCCGCAACTCTCGCTGCATCTACTGCAACCC
ACCCGGACTCCCGATATACATGGCGGAGTGGGCGATGTGTTCGACGAGGC
GAGTGACGGAGCCCCTTTGAGAACCCGCCGTAATTGTAATTTCAGGCAAT
GTTCTCTCCAGGCTAACTACAGTAGAAGTCCCAAGGGATTCCAGACCCAT
CGTATTCAGGACCCCCTCGTGATATTCGGTCCAGAGGCTCTGAAGTACCA
TTTTACCTTCCGCCCGTGGGTTTGCGGTTGAAAGAAGATACCGCAGCCAT
CCGCACGCGGGGCGGAAAGCCGGCAAGCTGCCCAGCACGTGCCAAGAAGG
GCTAACCTGCGGCTTTCTTCCCGGCGAGGCCAGCGTTTGACGAGCTCGAT
CGGCCTTTATCGAACTTATCGTACAGGTTTCACATGCAGGTTGATCAGTA
AAAATAAAAGCGTTGTCCAACACACTGGGATGCACCAAGGTAGCCTCAGA
AAGCTCTCGCCCGGGGGCGCGTTTGAACGTTTTTTTTTTAACGCAGTGTT
TGGCTCGACTCGAGACTCTTGTTACATCCAGCGGGAAACTCTGCGCAGGG
TGGTGTCATGGACGCAAGTATATGTCAATCGTATAGATGGACCTTAAGGA
GAAGAGTCGCGGCTGAGCTGCTCGATTTCTGTCTCTTTTTTGCACGACCC
GCCATTTTTTGGTACATACATATGTATGCGATTTATTTTTCTTGTCCTGT
GAAAGCTGTCAAGCGTATTTATTCGACAGACGGTAGGAGGTTTGTTCGTG
CATACCCCTTATAGGGCGATCTCCACAGTCCCGCCGGAATGCGTATAACG
AAGCGGAAGGAACTAAGAATAGCTACGTGTGTATATGTGTATGTATGTAA
GACAAGACCGACCGTGGTATGAACTGCAACCAACTCGTTCGCGCAGCACA
CACATATCATGCATGTACTTGCGCCGCGAGGGGTATACGCATGTAAAGAA
CACTTGCTGGTTTTGTCCCTGGGTGAGCAGATTTCAACACAACGCACAAT
TAACTCACGGTATGTGTATGTACCAAAATTACTCTTCTGATATTTTAGGT
TGTTTTTCTGCTCGCTTCGCCAAATATTACGTCACTGTTGTATGGAATAC
CGTTTGAACCCCATATCGAGTCCTTGCTCTAGTGTGGGTGGGGTAGGTTC
CATCTTTGATTCATTGTTTATTTTTAGAATTATTTGCTGCTCTCACTCGG
TAGTTGTGCGTGTACGTATGTACACATATAACATACCAGGCGTGCATGTG
TGCTGATATATGTATGCTTCGTATGCCCGTGTGCATGCCTCCGCTTTCTT
CGTTGTGTTGCCCGGATAAGCAGGTTCAAGCTGAAGAGTGGGCAGCCGCC
GCCGAATGTGCATGGGAAGGTGAAGAAGCAGGCTCAACCCCCTCGATGGG
AAAGGGTGCGTAAAGTTTGCCGTCGTCGTCGGCGGTGGCATCGTCCTCGT
CGTTGGCGTTCGCTTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTG
TTGTTGTTCTTTGATGATGATGCCGTTGGTGCGGCTGTTGTTGTTGTCGT
TGTCGTTGTTGCTGTGGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTG
GTGATGGGTGGTGGCGGTGTGGCTTCGCGCGGATTCTTTGTACGTGTTTT
GGATTTCTTCGTCGGCGCTTCCATGTGTGGCAGGCCGCACGCGAGCAAAC
CTTCACAATCGATCCTGCGGCAGCAGTTTTTAACCCAGCAGCCGAGGAAC
CCTGCTGCTGTACGCCGCTTCACCTTGACCTCGGCGTGGAAATCGGGATG
AGATGCCACCGAGGGCCTAAAAAAAGCCTCGCTCTCGTATCACATCATGA
GGCGGCCGGCAGCTCTTCCGCTCGAAACTCCCTTGCTCGACAGAAGCTTC
CCGAGTAACAAGAAGTCCCGGTAGTGGCCCGCGCGTCCAGCCAGAGTGTA
GCAAGGCAAATGCTGCGAGGGTTCTCCTCACAACACGTCTTGCGGTCTTG
GTTGACACAACGTCCGTCCTTTTTGCTGTTTGTTTTTGGCCGCGGCCGCG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCGCCTAAGGAGA
CCACCCCGCCTCCTTTTACCTTTTTCTTTTTTGTTGTTTTTTACCCCCCC
CCCCCTCTTTTTTTCTTTTTTTTTTTGCCCCCGCCCCCCCCCCCCCCCCC
CCCCCCAACCCTACACGTCTGTTTCTACTGTTGTAGGAGGCCATCTCCAC
CGCAAGCGCGGCCGCCCGAGGGGGCGCACGCTACGACGAGGAATCTGTCG
GCGGCGGCGGCGCTGGCAGTGGGGGTCGTGGGAGCGGCGTCGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig720:9856..12248+ >mRNA_L-elsbetiae_contig720.16042.1 ID=mRNA_L-elsbetiae_contig720.16042.1|Name=mRNA_L-elsbetiae_contig720.16042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig720:9856..12248+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTTCGAGAGCTTTGCCTGCCGCAACTCTCGCTGCATCTACTGCAACCC
ACCCGGACTCCCGATATACATGGCGGAGTGGGCGATGTGTTCGACGAGAG
GTTCGAGAGCTTTGCCTGCCGCAACTCTCGCTGCATCTACTGCAACCCAC
CCGGACTCCCGATATACATGGCGGAGTGGGCGATGTGTTCGACGAGGTTC
AAGCTGAAGAGTGGGCAGCCGCCGCCGAATGTGCATGGGAAGGTGAAGAA
GCAGGCTCAACCCCCTCGATGGGAAAGGGTTCAAGCTGAAGAGTGGGCAG
CCGCCGCCGAATGTGCATGGGAAGGTGAAGAAGCAGGCTCAACCCCCTCG
ATGGGAAAGGGAGGCCATCTCCACCGCAAGCGCGGCCGCCCGAGGGGGCG
CACGCTACGACGAGGAATCTGTCGGCGGCGGCGGCGCTGGCAGTGGGGGT
CGTGGGAGCGGCGTCGAGGCCATCTCCACCGCAAGCGCGGCCGCCCGAGG
GGGCGCACGCTACGACGAGGAATCTGTCGGCGGCGGCGGCGCTGGCAGTG
GGGGTCGTGGGAGCGGCGTC back to top
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