mRNA_L-elsbetiae_contig72.16041.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig72.16041.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 201 bits (511), Expect = 5.790e-53 Identity = 134/272 (49.26%), Postives = 166/272 (61.03%), Query Frame = 1 Query: 637 VRELRRAKANALLASVSKWGDSR-VPLGIAALQGHSGVIRELIGHGGIEGCGGASGGVGALRCAAEIGHVGILAMLAEAGVVDSGTALLGAAGLGQTAAVKFLFQQRRGKNKTADGGAYVNTRHPTGRTPLF-CNIMLPRCSPKMVRVLVDAGADTARAFPVTQA-GRVFFNDTALTLTTFQLGKKMV-DGKPATEDQLDRLEAIRRLLMRVEAVHAASWLWTSGSFPGNRAAEAADGATTPSALTSMMPVMRTRARRRGVLLQALFRNSVK 1440 +REL R AN LL S G++ VPL +AA GH+ V+RELI GIEGC S G AL AA H+ I+A+L EAGVVD+G AL AAG+G A+VKFL + R + GAY+N R G TPL C +P++VR+LVDAGADT V G V FNDT L T +L KK+V DGKPAT++ L RLEAI RLL+RV+AVHA SWLW SG+ RA E P AL M+P+++ R +RR L+ L R SVK Sbjct: 256 MRELLRGNANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETDPEPPLP-ALKLMLPILKRRTKRRCGLVATLLRYSVK 526
BLAST of mRNA_L-elsbetiae_contig72.16041.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI) HSP 1 Score: 197 bits (500), Expect = 2.740e-52 Identity = 138/279 (49.46%), Postives = 175/279 (62.72%), Query Frame = 1 Query: 646 LRRAKANALLASVSKWGDSRVPLGIAALQGHSGVIRELIGHGGIEGCGGASGGVGALRCAAEIGHVGILAMLAEAG-VVDSGTALLGAAGLGQTAAVKFLFQQRRGKNKTADGGAYVN-TRHPTGRTPLFCNIMLPR---CSPKMVRVLVDAGADTARAFPVTQAGRVF--FNDTALTLTTFQLGKKMVDGKPATEDQLDRLEAIRRLLMRVEAVHAASWLWTSGSFPGNRAAEAADGATTPSALTS-------MMPVMRTRARRRGVLLQALFRNSVK 1440 L RAKAN LL S + G S VPL +AAL G+ V RE+I GI GCGG SGGV ALR AA+ H+ +A+L +AG VVD+G AL+ AA G+ AVKFL ++R+ AD AYVN TR P GRTP+ C + + CSPK+VR+LVDAGA+T RA VT+ + ++T L TT L + VDG+ AT++QL RL+ R LL R EAVHA SWLW SG P R A+AA T +A T+ M P++R + RGVLL+ LFR S K Sbjct: 164 LLRAKANPLLCSHTPMGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQ-----ADADAYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPP--RIAQAAGDTKTETASTAVATPLRAMSPMLRRKPGTRGVLLKTLFRYSRK 435
BLAST of mRNA_L-elsbetiae_contig72.16041.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 180 bits (457), Expect = 3.200e-46 Identity = 126/275 (45.82%), Postives = 160/275 (58.18%), Query Frame = 1 Query: 652 RAKANALLASVS-KWGDSRVPLGIAALQGHSGVIRELIGHGGIEGCGGASGGVGALRCAAEIGHVGILAMLAEAGVVDSGTALLGAAGLGQTAAVKFLFQQRRGKNKTADGGAYVNT-RHPTGRTPLFCNI---MLPRCSPKMVRVLVDAGADTARAFPVT-QAGRVFFNDTALTLTTFQLGKKMVDGKPATEDQLDRLEAIRRLLMRVEAVHAASWLWTSG----SFP--GNRAAEAADGATTPSALTSMMPVMRTRARRRGVLLQALFRNSVK 1440 RAKAN LL V+ W +PL AA G GV+ EL+ GI GCGG +GGV AL+ AA H+ ++ L AGVVD+G AL+ A G VKFL QQ+ G ++ AYV+ R P GRTPL CNI + CSPK+VR+LVDAGADT T Q G + T L+L T L K+ K ++ L RLE IRRLL+RVEAVHA SWLW +G P G A E +TT L +++P++R RAR RG + +L R +VK Sbjct: 168 RAKANPLLTRVNLAW--QHLPLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNGT--PSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRARGRGFVSASLCRYAVK 438
BLAST of mRNA_L-elsbetiae_contig72.16041.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 179 bits (454), Expect = 7.010e-46 Identity = 132/276 (47.83%), Postives = 163/276 (59.06%), Query Frame = 1 Query: 634 AVRELRRAKANALLASV-SKWGDSRVPLGIAALQGHSGVIRELIGHGGIEGCGGASGGVGALRCAAEIGHVGILAMLAEAGVVDSGTALLGAAGLGQTAAVKFLFQQRRGKNKTADGGAYVNTRHPTGRTPLFCNIMLPRCSPKMVRVLVDAGADTARAFPV-TQAGR--VFFNDTALTLTTFQLGKKMVDGKPATEDQLDRLEAIRRLLMRVEAVHAASWLWTSGSFPGNRAAEAADGATTP--SALTSMMPVMRTRARRRGVLLQALFRNSVKP 1443 A R L AKA+ LL +V G + +PL AA GH V+ ELI GI+GCGG+SGGV AL+ AA+ ++ I+ +L AGVVD+G AL+ AAG G +KFL +Q R + KT D AYVNTR G TPL I R P++VR+LV+AGADT V Q G V LT+ + K+V PA+ +QL +LEAIRRLL+RVEAVHA SWLW S RAA TT +A+T M V R RAR R V L AL R S KP Sbjct: 163 AARLLLLAKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARAR-KTMDEAAYVNTRDRGGVTPLLWGIQHYR--PRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLRYSSKP 435
BLAST of mRNA_L-elsbetiae_contig72.16041.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 174 bits (440), Expect = 8.530e-44 Identity = 124/275 (45.09%), Postives = 162/275 (58.91%), Query Frame = 1 Query: 631 VAVRELRRAKANALLASVSKWGDSR-VPLGIAALQGHSGVIRELIGHGGIEGCGGASGGVGALRCAAEIGHVGILAMLAEAGVVDSGTALLGAAGLGQTAAVKFLFQQRRGKNKTADGGAYVNTRHPTGRTPLFCNIMLPRCSPKMVRVLVDAGADTARAFPV-TQAGRVFFNDTALTLTTFQLGKKMVDGKPATEDQLDRLEAIRRLLMRVEAVHAASWLWTSGSFPGNRAAEAADGATTPSALTS---MMPVMRTRARRRGVLLQALFRNSVK 1440 VAV L AKA+ LL S G R +PL +AA GH V+ ELI GI+GCGG+SGG ALR AA + I+A+L +AGVVD+G AL+ AAG G A +KFL +Q RG+ K+ D AY+NT + G T L I RC P++V++LV+AGADT + Q G F+ T L LT LG + KP T ++ ++LE IRRLL+R EAVHA SWLW S + A G TT ++ + +M ++ R R R LL AL R S K Sbjct: 162 VAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQARGR-KSTDRAAYMNTLNGVGLTSLLDGIQ--RCRPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGR--SAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALLRYSSK 431
BLAST of mRNA_L-elsbetiae_contig72.16041.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI) HSP 1 Score: 173 bits (438), Expect = 8.920e-44 Identity = 126/281 (44.84%), Postives = 158/281 (56.23%), Query Frame = 1 Query: 634 AVRELRRAKANALLASVSKWGDSRVPLGIAALQGHSGVIRELIGHGGIEGCGGASGGVGALRCAAEIGHVGILAMLAEAGVVDSGTALLGAAGLGQTAAVKFLFQQRRGKNKTADGGAYVNTRHPTGRTPLF-----CNIMLPRCSPKMVRVLVDAGADTARAFPVTQA-GRVFFNDTALTLTTFQLGKKMVDGKPATEDQLDRLEAIRRLLMRVEAVHAASWLWTSGSFPGNRAAEAADGATTPS-----ALTSMMPVMRTRARRRGVLLQALFRNSVKP 1443 A REL RA AN L+ + +PL AA G+ V+RELI GIEGCGG S G AL A E V +A+L AGVVD+G AL +AGLG+ A+VK+L Q K GAYVN R G TPL C + P++ R+LV+AGADT T + G V F+ T L LT L K VDG ++ +L RLE IRRLL++VEAVHA SWLW S S G R + A TT + L ++P++R RARR GV+ AL R+ KP Sbjct: 149 ATRELLRANANPLITRAPL--PTLLPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDTGQALTISAGLGREASVKYLLQNHA---KHYGPGAYVNVRDRNGTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRKP 424
BLAST of mRNA_L-elsbetiae_contig72.16041.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI) HSP 1 Score: 157 bits (398), Expect = 1.800e-38 Identity = 120/270 (44.44%), Postives = 156/270 (57.78%), Query Frame = 1 Query: 655 AKANALLA-SVSKWGDSRVPLGIAALQGHSGVIRELIGHGGIEGCGGASGGVGALRCAAEIGHVGILAMLAEAGVVDS-GTALLGAAGLGQTAAVKFLFQQRRGKNKTADGGAYVN-TRHPTGRTPLFCNIMLPR---CSPKMVRVLVDAGADTARAFPV-TQAGRVFFNDTALTLTTFQLGKKMVDGKPATEDQLDRLEAIRRLLMRVEAVHAASWLWTSGSFPGNRAAEAADGAT-TPSALTSMMPVMRTRARRRGVLLQALFRNSVK 1440 AKAN LL S G S VPL +AA G S V+ EL+ GI CGG SGG+ ALR AA G V I++ML +AGVVD G ALL A G G+ AAV FL +Q+ + +T+ YVN R G T L + + C+P++ R LVDAGADT A + + R N T L ++ PAT++QL RLEA RR+L+RV AVHA SW+W S + R A + A +P+ LT+++PV+R RA RR +L LFR S K Sbjct: 140 AKANPLLTWSSESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTS----YVNIARDDDGLTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRTAKHSPTQLTTVLPVLRRRAGRRALLWDTLFRYSKK 405
BLAST of mRNA_L-elsbetiae_contig72.16041.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI) HSP 1 Score: 156 bits (394), Expect = 9.710e-38 Identity = 114/263 (43.35%), Postives = 144/263 (54.75%), Query Frame = 1 Query: 670 LLASVSKWGDSRVPLGIAALQGHSGVIRELIGHGGIEGCGGASGGVGALRCAAEIGHVGILAMLAEAGVVDSGTALLGAAGLGQTAAVKFLFQQR-RGKNKTADGGAYVNT-RHPTGRTPLFCNIMLPRCSPKMVRVLVDAGADTARAFPVTQAGRVFFNDTALTLTTFQLGKKMVDGKPATEDQLDRLEAIRRLLMRVEAVHAASWLWTSGSFPGNRAAEAADGATTPSA----LTSMMPVMRTRARRRGVLLQALFRNSVK 1440 LL + G++ VPL AAL GH V REL+ GI GC GAS GV AL AA H+ ++A+L +AGVVD+G AL+ LG+ A+KFL +Q+ G +T Y +T R G TPL + CSP++VR+LVDAGAD A V T L T L +K+VD AT QL L A RRLL++VE VHA SWLW G G AA A T S L S +P+M R+ RRG L +FR + K Sbjct: 171 LLPTRMSSGNTFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVATVFLGRERALKFLLEQKGEGTARTT----YASTPRDGRGHTPLLSAVTTGPCSPRVVRLLVDAGADATLAVRVPDGFGRSTKYTPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLW--GGHAGCPAAPGKKRAQTESTNGKPLKSRLPIMWRRSARRGAALPGVFRLAKK 427
BLAST of mRNA_L-elsbetiae_contig72.16041.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 148 bits (374), Expect = 6.000e-37 Identity = 106/220 (48.18%), Postives = 139/220 (63.18%), Query Frame = 1 Query: 838 HVGILAMLAEAGVVDS-GTALLGAAGLGQTAAVKFLFQQRRGKNKTADGGAYVNTRHPTGRTPLFCNIMLPRCS---PKMVRVLVDAGADTARAFPVTQA-GRVFFNDTALTLTTFQLGKKMVDGKPATEDQLDRLEAIRRLLMRVEAVHAASWLWTSGSFPGNRAAEAADGATT---PSALTSMMPVMRTRARRRGVLLQALFRNSVKP*SGSARGTSR 1473 H+ I+A+L AGV D+ G LLG AGLG+ A+V+FL +QRR K AY N+ +G TPL C+I CS P++VR+LVDAGADT VT G V +NDT L +TT L +K+VDGKPATE+QL RL+AIRRLL+RV+AVHA SWLW S + A E + G P +LT +P+++ RA+ V + L R+S P S S RG+ R Sbjct: 4 HMDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRR-KESEMSVHAYANSSDGSGMTPLSCSIEW--CSSGNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPPLSLT--LPILKRRAKTCHVFVATLLRSS--PIS-SGRGSRR 215
BLAST of mRNA_L-elsbetiae_contig72.16041.1 vs. uniprot
Match: D7FY91_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI) HSP 1 Score: 153 bits (387), Expect = 3.210e-36 Identity = 115/263 (43.73%), Postives = 147/263 (55.89%), Query Frame = 1 Query: 661 ANALLASV--SKWGDSRVPLGIAALQGHSGVIRELIGHGGIEGCGGASGGVGALRCAAEIGHVGILAMLAEAGVVDSGTALLGAAGLGQTAAVKFLFQQRRGKNKTADGGAYVNTRHPTGRTPLFCNIMLPRCSPKMVRVLVDAGADTARAFPVT-QAGRVFFNDTALTLTTFQLGKKMVDGKPATEDQLDRLEAIRRLLMRVEAVHAASWLWTSGSFPGNRAAEAADGATTPSALTSMMPVMRTRARRRGVLLQALFRNSVK 1440 A+ LL +V S G +PL +A S V+REL+ GIE CGG S GV AL A HVGI+AMLA AGVVD G+AL AA G A+VKFL +Q GK+ +A AYVN + G TPL NI CS ++VR+LVDAGADT A+ +T + G+ T LT L +K G T ++ L+A RLL++VEA HA SW+W +GS +R A P LT +P+ R R LL A+ R S K Sbjct: 172 ADPLLGNVLPSTGGVCFLPLDVAXXXXXSAVVRELLQRLGIERCGGESRGVDALCLAVTGRHVGIVAMLAHAGVVDQGSALAAAAAQGYEASVKFLLRQHEGKH-SASRSAYVNKLNRFGLTPLLENITCGHCSARIVRLLVDAGADTTAAYRLTGKKGQAMAATTHLTAMGCLLLEKKAKGD--TGEEPHNLQATFRLLLQVEAAHAISWVWPTGSHSVDRPPRRQRRAEAPVRLT--LPMTRRDTGTRRALLGAVSRYSEK 429 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig72.16041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig72.16041.1 >prot_L-elsbetiae_contig72.16041.1 ID=prot_L-elsbetiae_contig72.16041.1|Name=mRNA_L-elsbetiae_contig72.16041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=343bp MNGHSAVVKALIKAGARLEAVNGMSFTPLHIAAQDGQWEAMNALIAAGAEback to top mRNA from alignment at L-elsbetiae_contig72:59824..63514- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig72.16041.1 ID=mRNA_L-elsbetiae_contig72.16041.1|Name=mRNA_L-elsbetiae_contig72.16041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3691bp|location=Sequence derived from alignment at L-elsbetiae_contig72:59824..63514- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig72:59824..63514- >mRNA_L-elsbetiae_contig72.16041.1 ID=mRNA_L-elsbetiae_contig72.16041.1|Name=mRNA_L-elsbetiae_contig72.16041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2058bp|location=Sequence derived from alignment at L-elsbetiae_contig72:59824..63514- (Laminarionema elsbetiae ELsaHSoW15)back to top |