mRNA_L-elsbetiae_contig72.16040.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: D7FTY7_ECTSI (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY7_ECTSI) HSP 1 Score: 241 bits (615), Expect = 2.490e-79 Identity = 129/154 (83.77%), Postives = 140/154 (90.91%), Query Frame = 1 Query: 55 MSTSLRRTSALLRPLVTAQARQLHSSVPK-GSVSGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEKSEK 513 MS SL+R+SALLRP+VTA R+LHSSVPK S GS +VLNADDGKLGTKLYHAVNMVVLAGVPAA+ATSPSALTMPLD+VLGIA+PLHAHIGMNYVISDYVPKS+RG ARGAMLAASV+A LGLLKLNLTGAGLTETLKATWR PKP E+ K Sbjct: 1 MSASLQRSSALLRPVVTAHVRRLHSSVPKTSSAPGSASVLNADDGKLGTKLYHAVNMVVLAGVPAAVATSPSALTMPLDIVLGIAMPLHAHIGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPKEEGAK 154
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: W7TCL8_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCL8_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.500e-33 Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 1 Query: 163 NVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAE 501 +++ AD G +GTK YH N +L P A+ SPS LT PLD+ LG+A P+H HIG+NY+ISDYVP++SR AR +L A+ V LGLLKLNL+G GLTET K+ WR K E Sbjct: 52 SLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKKEE 164
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: W4GD77_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GD77_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.380e-30 Identity = 60/119 (50.42%), Postives = 86/119 (72.27%), Query Frame = 1 Query: 151 SGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEKS 507 +G VLNAD+ K +K+ H + +LA VPAA+ SPSAL +P+D +L + +P+H+HIG+N V+SDYVPK+ + AR +L AS+V LGL+ LN+TGAG+TET+K+ WR+P E S Sbjct: 36 TGFNAVLNADNSKHTSKVMHYTSYGLLALVPAAVVLSPSALNVPVDYLLAVLVPVHSHIGINNVVSDYVPKNFKTLARAGVLGASIVTFLGLITLNVTGAGVTETVKSLWREPPSKEVS 154
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: A0A835YQL9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQL9_9STRA) HSP 1 Score: 116 bits (290), Expect = 5.210e-30 Identity = 61/132 (46.21%), Postives = 91/132 (68.94%), Query Frame = 1 Query: 115 RQLHSSVPKGSVSGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEKSE 510 RQ+H S + + G+ +V+NAD GKLGT ++H +N +LA +P + +P+ + P++++L +A PLHAH+ MNYVISDYVP+ ++ AR AML + VA+LGL+KL+LTG GL T+ A W+ P E E Sbjct: 22 RQVHGS--RKARKGAVDVVNADVGKLGTSMFHYLNYGLLAALPVLL-VAPTPVRTPVELLLAVAFPLHAHVSMNYVISDYVPRFAQQPARIAMLGVTAVASLGLIKLSLTGPGLVSTVGALWKKPAKEEAKE 150
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: A0A2D4BN75_PYTIN (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BN75_PYTIN) HSP 1 Score: 115 bits (288), Expect = 1.340e-29 Identity = 64/120 (53.33%), Postives = 80/120 (66.67%), Query Frame = 1 Query: 148 VSGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWR-DPKPAEK 504 VSG VL AD+ K+YH ++ +L VPAA SPS L++P+D LG+ +P+HAHIGMN VISDYVPK+ R AR A L + V LG+L+ N+ G GLTETLK WR DPK A K Sbjct: 40 VSGLAGVLEADNATFSHKVYHLSSLALLGLVPAAFVLSPSVLSVPVDYALGVIIPVHAHIGMNNVISDYVPKAHRTLARLAWLGVTGVMFLGILRNNIEGPGLTETLKTFWREDPKKAAK 159
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: A0A6G0X8T0_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8T0_9STRA) HSP 1 Score: 113 bits (283), Expect = 6.250e-29 Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 151 SGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEKSE 510 +G VLNAD+ TK H ++ +LA VP A+ SPSAL +P+D L +P+H HIG+N V+SDY+PK+ +G R A+L SVV +GLL LN+TGAG+TE++KA W +P P++K E Sbjct: 35 TGVNAVLNADNSVYTTKAMHLTSLALLALVPTAVVLSPSALNVPVDYALAALIPIHGHIGLNGVLSDYLPKNVQGLGRVAVLGVSVVTFVGLLSLNITGAGITESVKAIWIEP-PSKKEE 153
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: F0WYT9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WYT9_9STRA) HSP 1 Score: 112 bits (279), Expect = 4.220e-28 Identity = 67/160 (41.88%), Postives = 89/160 (55.62%), Query Frame = 1 Query: 88 LRPLVTAQARQLHSSVPKGS---------------------VSGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEK 504 LR L T +R + SS P S SG ++ AD+ TKLYH ++ +LA P A A SPS L+MPLD + I +P+HAHIGMN VISDY+PK + R A L A+ + LGL++LN+ G G+TET+K WR PK + K Sbjct: 12 LRSLPTVNSRTIQSSTPHHSSLLTTSLYPLGTASKYIENKEASGLAGIVQADNAVGYTKLYHFTSVGLLAVTPCAFALSPSTLSMPLDWAMSILIPVHAHIGMNNVISDYIPKPQQPVIRLAWLGAAGLMCLGLIRLNVEGPGITETIKTFWRQPKSSLK 171
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: A0A7S3PKA9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PKA9_9STRA) HSP 1 Score: 111 bits (277), Expect = 4.470e-28 Identity = 57/114 (50.00%), Postives = 76/114 (66.67%), Query Frame = 1 Query: 163 NVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEK 504 N++ AD KL+H N+ V+ P AI PS L+MP+DV L I PLHAH+GMN + +DYVP S G AR A+LA SV++ +GLLKL ++ G+T TLKA W++PK EK Sbjct: 38 NLVGADQTLSQAKLFHKTNLAVMVLTPLAIVAHPSPLSMPVDVALAIVFPLHAHMGMNIIFTDYVPGSPTGPARMALLAVSVLSTIGLLKLAVSEDGITGTLKAVWKEPKKEEK 151
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: A0A7S2WU59_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU59_9STRA) HSP 1 Score: 110 bits (274), Expect = 9.830e-28 Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 1 Query: 163 NVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPK----SSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWR 483 N L AD+G + TKLYH +NM +L P A PS +T PLD+ LG+ +PLH HIGMNYVI+DYVPK ++RG AR ML + V GL LNLTG G+T T+K W+ Sbjct: 31 NFLAADEGAMSTKLYHNLNMGLLVVTPPAFLFGPSYVTFPLDLALGVMMPLHGHIGMNYVITDYVPKFFGKAARGPARVIMLGVTGVTMAGLTHLNLTGKGITATIKGLWQ 141
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: A0A024TJC8_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJC8_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.540e-27 Identity = 58/119 (48.74%), Postives = 85/119 (71.43%), Query Frame = 1 Query: 151 SGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEKS 507 +G VLNAD+ K +K+ H + +LA VPAA+ SPSAL P+D +L + +P+H+HIG+N +SDYVPK+ + R +L SVV LGL+ LN+TGAG+TET+K+ WR+P P++K+ Sbjct: 78 TGFNAVLNADNSKHTSKVMHYTSYGLLALVPAAVVLSPSALNTPVDNLLAVLIPVHSHIGINNAVSDYVPKNFQKLVRTGVLGVSVVTFLGLITLNVTGAGVTETVKSLWREP-PSKKA 195 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig72.16040.1 >prot_L-elsbetiae_contig72.16040.1 ID=prot_L-elsbetiae_contig72.16040.1|Name=mRNA_L-elsbetiae_contig72.16040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp MSTSLRRTSALLRPLVTAQARQLHSSVPKGSVSGSTNVLNADDGKLGTKLback to top mRNA from alignment at L-elsbetiae_contig72:55438..58210+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig72.16040.1 ID=mRNA_L-elsbetiae_contig72.16040.1|Name=mRNA_L-elsbetiae_contig72.16040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2773bp|location=Sequence derived from alignment at L-elsbetiae_contig72:55438..58210+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig72:55438..58210+ >mRNA_L-elsbetiae_contig72.16040.1 ID=mRNA_L-elsbetiae_contig72.16040.1|Name=mRNA_L-elsbetiae_contig72.16040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig72:55438..58210+ (Laminarionema elsbetiae ELsaHSoW15)back to top |