|
|
Homology
BLAST of mRNA_L-elsbetiae_contig7191.16028.1 vs. uniprot
Match: D8LSJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ7_ECTSI) HSP 1 Score: 305 bits (780), Expect = 2.080e-98 Identity = 180/257 (70.04%), Postives = 201/257 (78.21%), Query Frame = 3
Query: 123 ILVGAVTAGLATWWWRGM---RKSGGVVGRQGARKSLAHTPGVRVVCVQDSSTGSSDGGWESSXXXXRSKGGE----ASKWEQSKQKGSLGYYFAHHITMKELAPEDYQMNGPRLLSKGDPAASNSGSAPNGSXXXXXXXXXX----PQQISSYSWEDYGEEVRLTFRQSEWEWATVEAEEIRVEWGPRRFRMSIDSREYGLHAIDLQRLSGDVAGVRVRKLKSRLVVALVKA-KRGTYSRTSPWTKLQADPEKPSD 857
I + A A L WW+RGM R SGG G G++K LAHTPG+R VC+QDS T S+GG XXXX +G +SKWEQSKQKG LGYYFAHHITMKELAPEDYQMNGP+LLSKGD ++ +G+ PNGSXXXXXXXXXX PQQISSYSWEDYGEEVRLTFRQSEWEWA V+ EEI +EWG RRFRMSIDSREYGLH IDLQRLSG VAGV RKLK+RLVVALVK +RG+YS + W+KLQA EKPSD
Sbjct: 15 IALAAALAALLLWWFRGMSEGRSSGGA-GTSGSKKPLAHTPGIRAVCMQDSFTEGSNGGGXXXXXXXTGQGDRRAAASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSKGDTTSAPNGARPNGSXXXXXXXXXXXXXXPQQISSYSWEDYGEEVRLTFRQSEWEWAKVDVEEIEIEWGSRRFRMSIDSREYGLHTIDLQRLSGVVAGVTARKLKTRLVVALVKGGRRGSYSHSPAWSKLQAALEKPSD 270
BLAST of mRNA_L-elsbetiae_contig7191.16028.1 vs. uniprot
Match: A0A6H5L1W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W9_9PHAE) HSP 1 Score: 134 bits (338), Expect = 2.560e-34 Identity = 80/129 (62.02%), Postives = 87/129 (67.44%), Query Frame = 3
Query: 93 HYEN-FLPWVAILVGAVTAGLATWWWRGM---RKSGGVVGRQGARKSLAHTPGVRVVCVQDSST-GSSDGGWESSXXXXRSKGGEA---SKWEQSKQKGSLGYYFAHHITMKELAPEDYQMNGPRLLSK 455
HY+ L +A+ G A L WW GM R SGGV G G++K LAHTPG+R VCVQDS T GS GGW SS G A SKWEQSKQKG LGYYFAHHITMKELAPEDYQMNGP+LLSK
Sbjct: 6 HYQREVLACIALAAGL--AALLLWWSPGMSEGRSSGGV-GTSGSKKPLAHTPGIRAVCVQDSFTQGSHGGGWGSSASSTGQGDGPAAASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSK 131
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 76.3 |
| Seed ortholog evalue | 2.4e-11 |
| Seed eggNOG ortholog | 44056.XP_009034362.1 |
| KEGG ko | ko:K16900 |
| KEGG TC | 1.A.1.11.13,1.A.1.11.26,1.A.1.11.30 |
| Hectar predicted targeting category | signal peptide |
| EggNOG free text desc. | low voltage-gated calcium channel activity |
| EggNOG OGs | KOG2301@1,KOG2301@2759,KOG2302@2759 |
| COG Functional cat. | C |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04040 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-09_001900.1 |
| Exons | 4 |
| Model size | 1345 |
| Cds size | 774 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816799.766333-UTR-L-elsbetiae_contig7191:798..1283 | 1622816799.766333-UTR-L-elsbetiae_contig7191:798..1283 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7191 799..1283 - |
| 1691683822.7418482-UTR-L-elsbetiae_contig7191:798..1283 | 1691683822.7418482-UTR-L-elsbetiae_contig7191:798..1283 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7191 799..1283 - |
| 1622816799.8226576-UTR-L-elsbetiae_contig7191:4182..4268 | 1622816799.8226576-UTR-L-elsbetiae_contig7191:4182..4268 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7191 4183..4268 - |
| 1691683822.7983122-UTR-L-elsbetiae_contig7191:4182..4268 | 1691683822.7983122-UTR-L-elsbetiae_contig7191:4182..4268 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7191 4183..4268 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816799.7773383-CDS-L-elsbetiae_contig7191:1283..1461 | 1622816799.7773383-CDS-L-elsbetiae_contig7191:1283..1461 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7191 1284..1461 - |
| 1691683822.7552266-CDS-L-elsbetiae_contig7191:1283..1461 | 1691683822.7552266-CDS-L-elsbetiae_contig7191:1283..1461 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7191 1284..1461 - |
| 1622816799.7872875-CDS-L-elsbetiae_contig7191:2075..2302 | 1622816799.7872875-CDS-L-elsbetiae_contig7191:2075..2302 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7191 2076..2302 - |
| 1691683822.764338-CDS-L-elsbetiae_contig7191:2075..2302 | 1691683822.764338-CDS-L-elsbetiae_contig7191:2075..2302 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7191 2076..2302 - |
| 1622816799.7991736-CDS-L-elsbetiae_contig7191:3356..3551 | 1622816799.7991736-CDS-L-elsbetiae_contig7191:3356..3551 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7191 3357..3551 - |
| 1691683822.7743788-CDS-L-elsbetiae_contig7191:3356..3551 | 1691683822.7743788-CDS-L-elsbetiae_contig7191:3356..3551 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7191 3357..3551 - |
| 1622816799.8115668-CDS-L-elsbetiae_contig7191:4008..4182 | 1622816799.8115668-CDS-L-elsbetiae_contig7191:4008..4182 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7191 4009..4182 - |
| 1691683822.7848332-CDS-L-elsbetiae_contig7191:4008..4182 | 1691683822.7848332-CDS-L-elsbetiae_contig7191:4008..4182 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7191 4009..4182 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7191.16028.1 >prot_L-elsbetiae_contig7191.16028.1 ID=prot_L-elsbetiae_contig7191.16028.1|Name=mRNA_L-elsbetiae_contig7191.16028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=258bp
MMHYENFLPWVAILVGAVTAGLATWWWRGMRKSGGVVGRQGARKSLAHTP
GVRVVCVQDSSTGSSDGGWESSGGGGRSKGGEASKWEQSKQKGSLGYYFA
HHITMKELAPEDYQMNGPRLLSKGDPAASNSGSAPNGSPPPTTTKRRRPQ
QISSYSWEDYGEEVRLTFRQSEWEWATVEAEEIRVEWGPRRFRMSIDSRE
YGLHAIDLQRLSGDVAGVRVRKLKSRLVVALVKAKRGTYSRTSPWTKLQA
DPEKPSD* back to topmRNA from alignment at L-elsbetiae_contig7191:799..4268- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig7191.16028.1 ID=mRNA_L-elsbetiae_contig7191.16028.1|Name=mRNA_L-elsbetiae_contig7191.16028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3470bp|location=Sequence derived from alignment at L-elsbetiae_contig7191:799..4268- (Laminarionema elsbetiae ELsaHSoW15)
GGTGAGGACACAGACAGGCATTTCTCTTCATGGCGCACGCAAGATATTCT
TCATCCATCGCGTAGGAACCCGCTATACGAAATAAAATGATGCATTACGA
GAACTTTTTGCCGTGGGTCGCCATCCTCGTCGGCGCCGTCACAGCCGGCC
TGGCGACATGGTGGTGGCGAGGCATGCGGAAGAGTGGCGGCGTCGTTGGA
AGACAAGGAGCCAGGAAGTCGCTGGCTCATACTCCTGGCGTTCGAGTGGT
CTGCGTTCAGGTGCACCAGAGAACCAGAGAGAAGTACATACAATGAATAC
AATGAAATGCGGAGGAACGTGCTGAGAGAGCCTACGACACGTGGCGCGTA
ATTGTATCACGATTGGCATCAGTTTTGTCTTTTTTTGAAGTTTAGCGTGT
CAATTATGTTCACGTACAAATGCCAGCAGGAAAGAGCTGTTGCAAGTATT
GGTGTGAAATGTTGGAGTTTTCAGCAATTTCATGTTTTTTTGTTCTCGTT
CGCCGATTCGTGCATATTCTTGTCATGTGCGCCCATTCTGGTATTCACCA
CGCGCAGACACGCCGTTCGTTTGTCTGGACAATTTTGTGGGAGAGAAAAA
AAGTTGCGGGGATAATAAATGCCGTTGCCCTGATACAGTGTATAGTAGTG
GGTTCGCAATGCCGTGTGTTCGGTTTGTGATACCAAACCACCAACAACCT
TTGATTATTCGGTGCAGGATTCTTCGACCGGCAGCTCGGACGGCGGGTGG
GAGTCATCAGGAGGCGGTGGGCGCTCGAAAGGCGGCGAGGCCAGCAAATG
GGAACAGAGCAAGCAGAAGGGGAGCTTGGGGTACTATTTCGCGCACCACA
TCACGATGAAGGAGCTCGCCCCGGAAGACTATCAGATGAACGGCCCTCGG
CTGCTGAGCAAGGTACCTCTAGGTGTTCCGTCGAAAGGGGTTGCGGGTTT
GCACCCTGGAGAGCGGAAGGTCGGAGTGTTCTGTCAATCAGCCTCCCCTG
AACCATTGGGTCACTAGTTTCTCTGAACATTCTTGTCCTCAGCGTACCTT
TGCTATCATTGCCTTGGAGATGCTTCCCCTGTATTCGAAGGCTTCATCGA
ACTCGGTACGGGTTTTTGGACCGATCGCAAGGTAGCGCGCTCTGACCTCT
TATCATGCACGTAGCACTCACGGAAAACACGGTGATACTCGCACGTGAAA
ATAACTCTGTTGCACTCACCAACTCTAATCGACCGGCTTGCAATCCGTAA
CAAAAGCTACGCAGAGATGGATTAGCAAGGTTTCCCATTACAAAGTATTG
AGCGGAGCGGTAAGTGATGGATGGTTCGCAGAGTACCTATTGTATACAAA
TATTACTTTTGGACCATTTCGCTGGCGGACAGAAATAGTAGGGCTGAACA
TTGTTCTCTTAATTTTTGTGCTTGAGGCGAGGTGCTTTGGTCTACTGTAG
AACATCTCGATACAGCACGGTGAAGCGAGGTGGTACATATATTGGTTGTG
GGCGGCGGGGGGTCGGAACATAGGCCGCGAGGTATTTTTCGCTTCTGGGT
GCTTGTCGCCCGTCTTATATACTGGTAGTTGATATCTGGTAACAGAACAT
GCTGGCCTTTTCTTTTCGCCGGCGCTTAGTTCTGCTACGGCTGACGAACG
CTGTGCTCTAGCTGTTAGGTTGCTTTCATATTCTTGTTGTGGGTGCTCAC
TTCTCAAAGTGCATTCAGAGCGGAATTAGTGAAGATCTTGCTGAGCTTGC
TGCCAACAAGCTCTGCCGCCTTAGTGTTTGCCTCCACCTTCCTCTCGCCT
GACGAACGCGGTTCAATCAACTACCTTCGGCCGCATCATGAAGATCTTGC
TGGGCTTGCTGCCAACAAACTCTGACGCCTTAGTGTTTGCCTCCCCCTTC
CTCTCGCCTGACGAACGCGGTTCAACCACCGGTATACCTCCGTGTGCGTA
CGGCCGAAACCGCCAGGGTGATCCCGCCGCATCAAACAGCGGGTCTGCAC
CCAACGGGAGCCCTCCCCCAACGACGACGAAGCGACGGCGGCCGCAGCAA
ATATCGTCCTACTCTTGGGAGGACTACGGAGAGGAGGTTCGGCTGACGTT
TCGGCAGTCTGAGTGGGAGTGGGCCACCGTGGAGGCGGAGGAGATAAGGG
TCGAGTGGGGTCCTCGGCGGTTCCGGATGTCCATCGATAGCAGGTACGTT
TTTAAGACTACCACTACTGTGGGCGGGAAGCACTTGTGTACAAGCATGAG
CATGGACGTAAAATGTCCGCGGCCTTCCTGTCGGCCAACTGCGGTTGCGC
GGCTGGTGTTGCCGGTGTTCTCATCCCTAGCACATGATAATGTGTTGACT
TTGTCTGGTGTCTGTTATTTTCAACGTTGGAGTAATATTTGTAGGAGTAC
TTGTGTCATCTGGTGTCATCTGATGTGCAAGGGTGGGGAAAGGGGGAGAT
AGGTACATACGTCCCCAGTGTCGTTGTTCGAAATCCTTACTAGTCAGAGC
CAGGTCTAGTCATGGTTAGTGTCGTATCTTCGGAACTTCCACCGCTTATT
CAGTTCCACCAGAACACCGAGCAAATATATCGCTAGCTTTCATTTAGGCG
ATACTGTAAAGCTTTTTAAGTGGAAATGTCCCTGCTGAGTTGCAAGCTCC
AGGAATCACACCAAGTTCCAAGTACCTAGGCCAACGATACGACCACCTCT
CGTGCGCCGTCTTGGCGGGACCGACCTGGCGCTACATACACATGTACTGC
CGTTTTCATGCCTCTCGCGCGTCGTACCGATGTACCAACCCATCCGTTCA
CCTGCAGAGAGTACGGGCTCCACGCGATAGACCTCCAGAGGTTGAGCGGC
GACGTGGCGGGCGTGCGGGTGCGAAAGCTGAAGAGCCGGCTGGTGGTGGC
CCTGGTAAAGGCGAAGCGGGGGACCTACAGCAGGACGTCTCCCTGGACCA
AGCTGCAAGCCGACCCTGAAAAGCCTAGCGATTGATGCTGGCCGTACCGC
TTGACGGTGGAAGTCGTACAGCAGTGATTGTGCGCAGCTTCTTTTTCGCA
ACTTCTTGTGTCGAACCAATACTTTTTGCATCGCTATTGAAGATCGTTAG
TATCTTCTTCACCGTGAGACCCCACCCACGTCTGCAGGGACGTGCCACTG
CTTTCTGTATCGCCATTGAAGATCGTTAGTATCTTCTTCGCCTTGAGACC
CCACCCACATCTGCAGGGATGTGTCGCTAAATGGCGCGACCCACGCACAT
CTGCTGGGATGTTTGGCTTAACGGCGTGACCGGCGGCGGTGTAAACACTG
GGTGGGGGTATTTATCCCCTGGCCTAGTAGGAGTGCACCAATGAAGTAAT
CGTTGAAGAATACAATCGTGTGAAGTTACTGTCCTGGTTGGTGATTTTGT
AGTAGTTCCATTTTCTTTCGTGTTTTCTAGAAAAAGTTGTTGCCTTTCAC
GTTTGCTTTGATTCTCTGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig7191:799..4268- >mRNA_L-elsbetiae_contig7191.16028.1 ID=mRNA_L-elsbetiae_contig7191.16028.1|Name=mRNA_L-elsbetiae_contig7191.16028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1548bp|location=Sequence derived from alignment at L-elsbetiae_contig7191:799..4268- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCATTACGAGAACTTTTTGCCGTGGGTCGCCATCCTCGTCGGCGC
CGTCACAGCCGGCCTGGCGACATGGTGGTGGCGAGGCATGCGGAAGAGTG
GCGGCGTCGTTGGAAGACAAGGAGCCAGGAAGTCGCTGGCTCATACTCCT
GGCGTTCGAGTGGTCTGCGTTCAGATGATGCATTACGAGAACTTTTTGCC
GTGGGTCGCCATCCTCGTCGGCGCCGTCACAGCCGGCCTGGCGACATGGT
GGTGGCGAGGCATGCGGAAGAGTGGCGGCGTCGTTGGAAGACAAGGAGCC
AGGAAGTCGCTGGCTCATACTCCTGGCGTTCGAGTGGTCTGCGTTCAGGA
TTCTTCGACCGGCAGCTCGGACGGCGGGTGGGAGTCATCAGGAGGCGGTG
GGCGCTCGAAAGGCGGCGAGGCCAGCAAATGGGAACAGAGCAAGCAGAAG
GGGAGCTTGGGGTACTATTTCGCGCACCACATCACGATGAAGGAGCTCGC
CCCGGAAGACTATCAGATGAACGGCCCTCGGCTGCTGAGCAAGGATTCTT
CGACCGGCAGCTCGGACGGCGGGTGGGAGTCATCAGGAGGCGGTGGGCGC
TCGAAAGGCGGCGAGGCCAGCAAATGGGAACAGAGCAAGCAGAAGGGGAG
CTTGGGGTACTATTTCGCGCACCACATCACGATGAAGGAGCTCGCCCCGG
AAGACTATCAGATGAACGGCCCTCGGCTGCTGAGCAAGGGTGATCCCGCC
GCATCAAACAGCGGGTCTGCACCCAACGGGAGCCCTCCCCCAACGACGAC
GAAGCGACGGCGGCCGCAGCAAATATCGTCCTACTCTTGGGAGGACTACG
GAGAGGAGGTTCGGCTGACGTTTCGGCAGTCTGAGTGGGAGTGGGCCACC
GTGGAGGCGGAGGAGATAAGGGTCGAGTGGGGTCCTCGGCGGTTCCGGAT
GTCCATCGATAGCAGGGTGATCCCGCCGCATCAAACAGCGGGTCTGCACC
CAACGGGAGCCCTCCCCCAACGACGACGAAGCGACGGCGGCCGCAGCAAA
TATCGTCCTACTCTTGGGAGGACTACGGAGAGGAGGTTCGGCTGACGTTT
CGGCAGTCTGAGTGGGAGTGGGCCACCGTGGAGGCGGAGGAGATAAGGGT
CGAGTGGGGTCCTCGGCGGTTCCGGATGTCCATCGATAGCAGAGAGTACG
GGCTCCACGCGATAGACCTCCAGAGGTTGAGCGGCGACGTGGCGGGCGTG
CGGGTGCGAAAGCTGAAGAGCCGGCTGGTGGTGGCCCTGGTAAAGGCGAA
GCGGGGGACCTACAGCAGGACGTCTCCCTGGACCAAGCTGCAAGCCGACC
CTGAAAAGCCTAGCGATTGAAGAGTACGGGCTCCACGCGATAGACCTCCA
GAGGTTGAGCGGCGACGTGGCGGGCGTGCGGGTGCGAAAGCTGAAGAGCC
GGCTGGTGGTGGCCCTGGTAAAGGCGAAGCGGGGGACCTACAGCAGGACG
TCTCCCTGGACCAAGCTGCAAGCCGACCCTGAAAAGCCTAGCGATTGA back to top
|