mRNA_L-elsbetiae_contig7182.16020.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7182.16020.1
Unique NamemRNA_L-elsbetiae_contig7182.16020.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7182.16020.1 vs. uniprot
Match: D8LQC4_ECTSI (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC4_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 9.840e-115
Identity = 182/291 (62.54%), Postives = 203/291 (69.76%), Query Frame = 1
Query:    1 AMGPPPRHQQHQQA------DESSSMDEMDTSPGGXXXXXXXXXFEAKGWGPXXXXXXXXXXXXXHDREFFENGEYLPSRIDTTKNSYHVVCDRDKLGVRYRGQGNHAKDWGTVRANHPLPRRRRVSYFEITIAAMGDLCNITIGLVPDSFPMDKQPGAEGASYGLEGASGEALSGGPRGPNFANSISTGDTVGLGVNFKKREAFLTHNGRLLGSAFPGIRCALDAAGLYPCVGLHGPGEAVRINFGQRPFLFDLGASVKREDVREQAAVAAVPVCPSLLRSLVRDYLLHQ 855
            AMGPP R Q            ++SS DEMDTSP             AK W P                  FENGEYLPS +DTT+  YH VCDRDKLGVRYRGQG+H +DWGTVRANHPLPR +R+ YFE TIAA G+ C IT+GL+P SFP+++QPG EG SYGLEG +G+  SG   G  F     TGDTVGLGVNFKK E FLTHNGRLLG+AFP IRCALD  GLYPCVGLH  GEAV +NFG+RP+LFD+ ASV  ED REQAAVAAVPVCP LLRSLVRDYLLHQ
Sbjct:    9 AMGPPSRRQHXXXXXXXXXPSDTSSADEMDTSPD-ISPRSGDGLGGAKRWPPAEEHGGAAAGV-------FENGEYLPSAMDTTQPCYHAVCDRDKLGVRYRGQGHHEQDWGTVRANHPLPRHQRMWYFEATIAAQGENCCITLGLIPASFPVNRQPGTEGGSYGLEG-NGKVFSGSGVGQTFGAPFCTGDTVGLGVNFKKMEVFLTHNGRLLGAAFPTIRCALDVHGLYPCVGLHSRGEAVHLNFGRRPYLFDVSASVAGEDYREQAAVAAVPVCPVLLRSLVRDYLLHQ 290          
BLAST of mRNA_L-elsbetiae_contig7182.16020.1 vs. uniprot
Match: A0A6H5JHG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHG5_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 4.020e-105
Identity = 181/291 (62.20%), Postives = 203/291 (69.76%), Query Frame = 1
Query:    1 AMGPPPRHQQHQ------QADESSSMDEMDTSPGGXXXXXXXXXFEAKGWGPXXXXXXXXXXXXXHDREFFENGEYLPSRIDTTKNSYHVVCDRDKLGVRYRGQGNHAKDWGTVRANHPLPRRRRVSYFEITIAAMGDLCNITIGLVPDSFPMDKQPGAEGASYGLEGASGEALSGGPRGPNFANSISTGDTVGLGVNFKKREAFLTHNGRLLGSAFPGIRCALDAAGLYPCVGLHGPGEAVRINFGQRPFLFDLGASVKREDVREQAAVAAVPVCPSLLRSLVRDYLLHQ 855
            AMGPP R Q         Q  ++ S DEMDTSP             AK W P                  FENGEYLPS +DTT+  YH VC RDKLGVRYRGQG+H +DWGTVRANHPLPR +R+ YFE TIAA G+ C IT+GL+P SFPM++QPG EG SYGLEG +G+  SG   G  F +   TGDTVGLGVNFKK E FLTHNGRLLGSAFP IR ALD  GLYPCVGLH  GEAV +NFG+RP+LF++ ASV +ED REQAAVAAVPVCP LLRSLVRDYLLHQ
Sbjct:    9 AMGPPSRRQHXXXXXXXXQPSDTLSADEMDTSPD-ISPRRVDGLGGAKRWPPAEEHGDVAAGV-------FENGEYLPSAMDTTQPCYHAVCARDKLGVRYRGQGHHEQDWGTVRANHPLPRHQRMWYFEATIAAQGENCCITLGLIPASFPMNRQPGTEGGSYGLEG-NGKVFSGSGVGQTFGDPFCTGDTVGLGVNFKKMEGFLTHNGRLLGSAFPAIRSALDVHGLYPCVGLHSRGEAVHLNFGRRPYLFNVSASVAKEDYREQAAVAAVPVCPVLLRSLVRDYLLHQ 290          
BLAST of mRNA_L-elsbetiae_contig7182.16020.1 vs. uniprot
Match: A0A8J9WNV4_9CHLO (Ran-binding protein 10 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WNV4_9CHLO)

HSP 1 Score: 178 bits (452), Expect = 6.730e-49
Identity = 90/219 (41.10%), Postives = 128/219 (58.45%), Query Frame = 1
Query:  196 ENGEYLPSRIDTTKNSYHVVCDRDKLGVRYRGQGNHAKDWGTVRANHPLPRRRRVSYFEITIAAMGDLCNITIGLVPDSFPMDKQPGAEGASYGLEGASGEALSGGPRGPNFANSISTGDTVGLGVNFKKREAFLTHNGRLLGSAFPGIRCALDAAGLYPCVGLHGPGEAVRINFGQRPFLFDLGASVKREDVREQAAVAAVPVCPSLLRSLVRDYLLH 852
            E  E LPS  +T      +  ++DKL VRY GQGNH  D G ++ N P+PR+RRV Y+E+T+   G    I +G    +F M KQPG E  SYG  G  G+      +G ++    S GD +G G++ +++E F T NG+ LG+AF G    L    LYP +GLH PGE + +NFG  PF F L A ++ E  +++AAV ++P+   +   LVR+YLLH
Sbjct:   20 EEEEPLPSHFNTNNFGNFLDVEKDKLTVRYTGQGNHNNDVGAIQGNRPVPRKRRVYYYEVTVLDAGSKGLIGVGFADKNFKMGKQPGWEQHSYGYHGDDGKKFHASGQGEDYGPHFSAGDVIGAGIHIQRQEIFFTKNGKNLGTAFRG----LTQLPLYPTIGLHSPGECIVVNFGASPFAFKLDAMLEEEREQQEAAVQSIPIPAGVTHRLVREYLLH 234          
BLAST of mRNA_L-elsbetiae_contig7182.16020.1 vs. uniprot
Match: A0A2R6XUI5_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XUI5_MARPO)

HSP 1 Score: 175 bits (443), Expect = 5.500e-48
Identity = 90/217 (41.47%), Postives = 129/217 (59.45%), Query Frame = 1
Query:  205 EYLPSRIDTTKNSYHVVCDRDKLGVRYRGQGNHAKDWGTVRANHPLPRRRRVSYFEITIAAMGDLCNITIGLVPDSFPMDKQPGAEGASYGLEGASGEALSGGPRGPNFANSISTGDTVGLGVNFKKREAFLTHNGRLLGSAFPGIRCALDAAG-LYPCVGLHGPGEAVRINFGQRPFLFDLGASVKREDVREQAAVAAVPVCPSLLRSLVRDYLLH 852
            E +P+ ++TT   + +V   DKL  RY G G H  D G +++N P P +R + YFEI++   G    I+IG   ++F M +QPG E  SYG  G  G    G  RG +F  + +TGDTVG G+N+  +E F T NG+L+G+         +  G LYP +GLH P E V +NFGQ+PF+FD+ A V+ E  R Q +V +VP+  S+  ++VR YLLH
Sbjct:   35 EEVPTHLNTTTCGHFLVISTDKLSARYNGDGQHGHDVGAIQSNRPAPHQRLLYYFEISLKDRGQRGVISIGFTDENFKMSRQPGWEPNSYGYHGDDGLLYHGRGRGDSFGPTFTTGDTVGAGINYAAQELFFTKNGKLVGTHIK------EGKGPLYPTIGLHSPSEKVEVNFGQKPFIFDIEAMVQEERERRQRSVESVPLPLSISHNVVRTYLLH 245          
BLAST of mRNA_L-elsbetiae_contig7182.16020.1 vs. uniprot
Match: A0A1Y1I3W8_KLENI (Spla ryanodine receptor domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3W8_KLENI)

HSP 1 Score: 174 bits (441), Expect = 2.120e-47
Identity = 95/216 (43.98%), Postives = 122/216 (56.48%), Query Frame = 1
Query:  205 EYLPSRIDTTKNSYHVVCDRDKLGVRYRGQGNHAKDWGTVRANHPLPRRRRVSYFEITIAAMGDLCNITIGLVPDSFPMDKQPGAEGASYGLEGASGEALSGGPRGPNFANSISTGDTVGLGVNFKKREAFLTHNGRLLGSAFPGIRCALDAAGLYPCVGLHGPGEAVRINFGQRPFLFDLGASVKREDVREQAAVAAVPVCPSLLRSLVRDYLLH 852
            E  PS ++T      +   +DKL VRY G G H  D G+++AN P+PR R + YFE+T+   GD   I IG   ++F   +QPG E  SYG  G  G+A     RG  +  + +TGD VG GVN   +E F T NG+ LG AF  +R  L     YP VGLH   E V +NFG+RPF FDL A V+ E  R Q AV  V +  S+  S+VR YLLH
Sbjct:   75 EEAPSELNTRNYGGFLEVGKDKLSVRYTGHGQHGHDVGSIQANRPVPRERLLYYFELTVRDRGDRNCIAIGFTDENFKHSRQPGWEAGSYGYHGDDGKAYHASGRGDAYGPTFTTGDVVGAGVNHATQEIFFTKNGKHLGVAFADVREIL-----YPTVGLHSKNERVEVNFGKRPFKFDLEALVQEERERRQRAVELVEMPSSISHSIVRGYLLH 285          
BLAST of mRNA_L-elsbetiae_contig7182.16020.1 vs. uniprot
Match: A0A8J4BYU5_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BYU5_9CHLO)

HSP 1 Score: 162 bits (409), Expect = 7.950e-43
Identity = 84/213 (39.44%), Postives = 119/213 (55.87%), Query Frame = 1
Query:  214 PSRIDTTKNSYHVVCDRDKLGVRYRGQGNHAKDWGTVRANHPLPRRRRVSYFEITIAAMGDLCNITIGLVPDSFPMDKQPGAEGASYGLEGASGEALSGGPRGPNFANSISTGDTVGLGVNFKKREAFLTHNGRLLGSAFPGIRCALDAAGLYPCVGLHGPGEAVRINFGQRPFLFDLGASVKREDVREQAAVAAVPVCPSLLRSLVRDYLLH 852
            PS +++ +  + +   +DK  VRY     H+ D G ++ANHP+P    V Y+E+T+   G    I IG    SF + +QPG E  SYG  G  G+   G   G ++  +  TGDTVG G++  ++E F T NG  L  A   +R     AGLYP +GLH  GE V++NFGQ+PF+FDL   +  E   ++AAV  +PV   +   LVR YLLH
Sbjct:   12 PSELNSARQGHGLEL-KDKFTVRYANDARHSNDVGAIQANHPVPPNCTVYYYELTVLDSGIFGKIAIGFADKSFKLTRQPGWEAGSYGYHGDDGKKFIGHGNGEDYGPTFGTGDTVGAGIHLGRQELFFTKNGTRLKVAHRPVR-----AGLYPTIGLHSKGEIVQVNFGQKPFVFDLEGMLAEEKAAQRAAVDRIPVSSGVTHKLVRQYLLH 218          
BLAST of mRNA_L-elsbetiae_contig7182.16020.1 vs. uniprot
Match: A0A8J4BLG1_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BLG1_9CHLO)

HSP 1 Score: 161 bits (407), Expect = 1.150e-42
Identity = 82/213 (38.50%), Postives = 118/213 (55.40%), Query Frame = 1
Query:  214 PSRIDTTKNSYHVVCDRDKLGVRYRGQGNHAKDWGTVRANHPLPRRRRVSYFEITIAAMGDLCNITIGLVPDSFPMDKQPGAEGASYGLEGASGEALSGGPRGPNFANSISTGDTVGLGVNFKKREAFLTHNGRLLGSAFPGIRCALDAAGLYPCVGLHGPGEAVRINFGQRPFLFDLGASVKREDVREQAAVAAVPVCPSLLRSLVRDYLLH 852
            PS +++ +  + +   +DK  VRY     H  D G ++ANHP+P    V Y+E+T+   G    I IG    SF + +QPG E  S+G  G  G+   G   G ++  +  TGDTVG G++  ++E F T NG  L  A+  +R     AGLYP +GLH  GE V +NFGQ+PF+FDL   +  E    +AA+  +PV P +   +VR YLLH
Sbjct:   12 PSELNSARQGHGLEL-KDKFTVRYASDARHTNDVGAIQANHPVPPNCTVYYYELTVLDSGIYGKIAIGFADKSFKLTRQPGWEAGSFGYHGDDGKKFIGLGNGEDYGPTFGTGDTVGAGIHLGRQELFFTKNGTKLKVAYRPVR-----AGLYPTIGLHSKGETVLVNFGQKPFVFDLEGMLAEEKAAHRAAIDRIPVSPGITHEIVRQYLLH 218          
BLAST of mRNA_L-elsbetiae_contig7182.16020.1 vs. uniprot
Match: A0A836BBQ5_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BBQ5_9CHLO)

HSP 1 Score: 161 bits (408), Expect = 1.430e-42
Identity = 86/216 (39.81%), Postives = 121/216 (56.02%), Query Frame = 1
Query:  205 EYLPSRIDTTKNSYHVVCDRDKLGVRYRGQGNHAKDWGTVRANHPLPRRRRVSYFEITIAAMGDLCNITIGLVPDSFPMDKQPGAEGASYGLEGASGEALSGGPRGPNFANSISTGDTVGLGVNFKKREAFLTHNGRLLGSAFPGIRCALDAAGLYPCVGLHGPGEAVRINFGQRPFLFDLGASVKREDVREQAAVAAVPVCPSLLRSLVRDYLLH 852
            E LPS ++T +  + +   +DKL VRY G   H  D G ++ANHP+P    V Y+E+TI   G    I IG    +F + +QPG E  SYG  G  G+   G   G ++  +   GDTVG G++  ++E F T NG  L +A   +R      GLYP +GLH  GE V++NFG +PF+FD+   +  E   ++AAV  +PV P    +LVR YLLH
Sbjct:    5 EPLPSALNTARQGHGLEL-KDKLTVRYAGDARHNNDVGAIQANHPVPVNCTVYYYELTILDGGISGKIAIGFADKNFKVTRQPGWEVGSYGYHGDDGKKFIGSGMGEDYGPTFGAGDTVGAGIHLGRQELFFTKNGTKLKAAHRPVR-----GGLYPTIGLHSKGEMVQLNFGAKPFVFDIEGMLAEERAAQRAAVERIPVAPGTSHALVRQYLLH 214          
BLAST of mRNA_L-elsbetiae_contig7182.16020.1 vs. uniprot
Match: A0A2V0P549_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P549_9CHLO)

HSP 1 Score: 160 bits (406), Expect = 2.390e-42
Identity = 87/213 (40.85%), Postives = 116/213 (54.46%), Query Frame = 1
Query:  214 PSRIDTTKNSYHVVCDRDKLGVRYRGQGNHAKDWGTVRANHPLPRRRRVSYFEITIAAMGDLCNITIGLVPDSFPMDKQPGAEGASYGLEGASGEALSGGPRGPNFANSISTGDTVGLGVNFKKREAFLTHNGRLLGSAFPGIRCALDAAGLYPCVGLHGPGEAVRINFGQRPFLFDLGASVKREDVREQAAVAAVPVCPSLLRSLVRDYLLH 852
            P+ +  T +  H+   +DKL VRY G G H  D G ++AN P+P ++ + YFE+TI   G+L  I +G  P    + +QPG E  SYG  G  G   S   +G  +      GDTVG  ++  K+E F T NG  L +AF  +R   ++ GL P VGLH   EAV +NFG RPF FDL   +  E   E  AV +VP+ PS     VR YLLH
Sbjct:    6 PTELSPTAHGPHLELGKDKLTVRYTGDGRH--DVGAIQANRPVPAKQLLFYFEVTILDQGELGKIGVGFTPKDVKLTRQPGWEPGSYGYHGDDGLRYSSSGKGEEYGPRFGAGDTVGAALHLGKQEIFFTKNGNKLRTAFSSVR---NSPGLVPTVGLHSRNEAVAVNFGARPFRFDLEGLLAEEAAAEAEAVDSVPLPPSAAHEAVRSYLLH 213          
BLAST of mRNA_L-elsbetiae_contig7182.16020.1 vs. uniprot
Match: I0YML3_COCSC (SPRY-domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YML3_COCSC)

HSP 1 Score: 160 bits (404), Expect = 4.810e-42
Identity = 86/225 (38.22%), Postives = 123/225 (54.67%), Query Frame = 1
Query:  196 ENGEYLPSRIDTTKNSYHVVCDRDKLGVRYRGQGNHAKDWGTVRANHPLPRRRRVSYFEITIAAMGDLCNITIGLVPDSFPMDKQPGAEGASYGLEGASGEALSGGPRGPNFANSISTGDTVGLGVNFKKREAFLTHNGRLLGSAFPGIRCALDAAGLYPCVGLHGPGEAVRINFGQRPFLFDLGASVKREDVREQAA------VAAVPVCPSLLRSLVRDYLLH 852
            E  E L S  +T      +  ++DKL VRY GQG H  D G ++ N P+PR+RRV Y+E+T+   G+   I +G    +F M KQPG E  SYG  G  G+      +G  +    + GD +G G++ +++E F T NG+ LG AF G    L    LYP  GLH PGE + +NFG  PF F+L A ++ E  +E+AA        ++ +   +   LVR+YLLH
Sbjct:   20 EEEEPLASHFNTNNFGNFLDVEKDKLTVRYTGQGAHNNDVGAIQGNRPVPRKRRVYYYEVTVLDAGEKGLIGVGFADKNFKMGKQPGWEPHSYGYHGDDGKKFHQNGQGEEYGPQFTLGDVIGAGIHIQRQEIFFTKNGKHLGVAFRG----LPQLPLYPTAGLHSPGECIAVNFGASPFAFNLEAMLQEEREQEEAASWVLHCACSISIPAGVTHRLVREYLLH 240          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7182.16020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQC4_ECTSI9.840e-11562.54B30.2/SPRY domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JHG5_9PHAE4.020e-10562.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J9WNV4_9CHLO6.730e-4941.10Ran-binding protein 10 n=1 Tax=Coccomyxa sp. Obi T... [more]
A0A2R6XUI5_MARPO5.500e-4841.47Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A1Y1I3W8_KLENI2.120e-4743.98Spla ryanodine receptor domain-containing protein ... [more]
A0A8J4BYU5_9CHLO7.950e-4339.44Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4BLG1_9CHLO1.150e-4238.50Uncharacterized protein n=2 Tax=Volvox africanus T... [more]
A0A836BBQ5_9CHLO1.430e-4239.81Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A2V0P549_9CHLO2.390e-4240.85Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
I0YML3_COCSC4.810e-4238.22SPRY-domain-containing protein n=1 Tax=Coccomyxa s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7182contigL-elsbetiae_contig7182:113..3748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score342.0
Seed ortholog evalue2.6e-91
Seed eggNOG ortholog2880.D8LQC4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0017016,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031267,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051020,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsKOG1477@1,KOG1477@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionSPRY domain
Ec32 orthologEc-10_005110.1
Exons4
Model size855
Cds size852
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7182.16020.1prot_L-elsbetiae_contig7182.16020.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7182 113..3745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816798.7702947-CDS-L-elsbetiae_contig7182:112..3761622816798.7702947-CDS-L-elsbetiae_contig7182:112..376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 113..376 -
1691683821.821036-CDS-L-elsbetiae_contig7182:112..3761691683821.821036-CDS-L-elsbetiae_contig7182:112..376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 113..376 -
1622816798.78166-CDS-L-elsbetiae_contig7182:1456..15851622816798.78166-CDS-L-elsbetiae_contig7182:1456..1585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 1457..1585 -
1691683821.8321264-CDS-L-elsbetiae_contig7182:1456..15851691683821.8321264-CDS-L-elsbetiae_contig7182:1456..1585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 1457..1585 -
1622816798.792566-CDS-L-elsbetiae_contig7182:2012..22191622816798.792566-CDS-L-elsbetiae_contig7182:2012..2219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 2013..2219 -
1691683821.841441-CDS-L-elsbetiae_contig7182:2012..22191691683821.841441-CDS-L-elsbetiae_contig7182:2012..2219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 2013..2219 -
1622816798.8037908-CDS-L-elsbetiae_contig7182:3493..37451622816798.8037908-CDS-L-elsbetiae_contig7182:3493..3745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 3494..3745 -
1691683821.8538847-CDS-L-elsbetiae_contig7182:3493..37451691683821.8538847-CDS-L-elsbetiae_contig7182:3493..3745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 3494..3745 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816798.8142567-UTR-L-elsbetiae_contig7182:3745..37481622816798.8142567-UTR-L-elsbetiae_contig7182:3745..3748Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7182 3746..3748 -
1691683821.8647678-UTR-L-elsbetiae_contig7182:3745..37481691683821.8647678-UTR-L-elsbetiae_contig7182:3745..3748Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7182 3746..3748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7182.16020.1

>prot_L-elsbetiae_contig7182.16020.1 ID=prot_L-elsbetiae_contig7182.16020.1|Name=mRNA_L-elsbetiae_contig7182.16020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=284bp
MGPPPRHQQHQQADESSSMDEMDTSPGGGGGGRGGGGFEAKGWGPGEEEE
EEEEEEEDHDREFFENGEYLPSRIDTTKNSYHVVCDRDKLGVRYRGQGNH
AKDWGTVRANHPLPRRRRVSYFEITIAAMGDLCNITIGLVPDSFPMDKQP
GAEGASYGLEGASGEALSGGPRGPNFANSISTGDTVGLGVNFKKREAFLT
HNGRLLGSAFPGIRCALDAAGLYPCVGLHGPGEAVRINFGQRPFLFDLGA
SVKREDVREQAAVAAVPVCPSLLRSLVRDYLLHQ
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mRNA from alignment at L-elsbetiae_contig7182:113..3748-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7182.16020.1 ID=mRNA_L-elsbetiae_contig7182.16020.1|Name=mRNA_L-elsbetiae_contig7182.16020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3636bp|location=Sequence derived from alignment at L-elsbetiae_contig7182:113..3748- (Laminarionema elsbetiae ELsaHSoW15)
GCCATGGGGCCCCCTCCGAGACACCAGCAGCACCAGCAGGCGGACGAGAG CTCATCGATGGACGAAATGGACACCTCGCCCGGGGGCGGGGGCGGGGGCA GGGGCGGGGGGGGCTTCGAGGCGAAAGGGTGGGGCCCTGGGGAAGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGACCACGATCGAGAATTCTTCGAGAA CGGAGAGTACCTCCCGTCCAGGATAGACACCACGAAGAACTCGTACCACG TGGTGGTGAGTTTTTGACGTCCACGGGGGGGTTCACCGTTATTTCTTCAT CGAGCGCTCCAATGCGTTACGTAGGGTATGCTGTGTTGTAAGCTGAGCCG GGCGAGAGCCGAGCTAGCTCCCCGCGCCTGGAGTGCATGGTGGTAGATAT GTATTTACTTTAGCTTGGTTAGCTGTCATGGGGAAAGGGATGTGTGTATG TTATGTTGTCTTCACATTGAAAACCGTTCCGATCTCTCCATCCAGTACCT CTCAATGTCCGTACTAATCCTACACTTGATGCGGTCAATTCCCGTGGTCA CAGGCTAATTTATACCCAAGAAAAGGTACACGAAAAAAAAATGGACCCAA AGGGCCAGCAAAGCAATAGTAAAACAGATATTTAATCTGGAGCCCTTAGC TTGGTGTCTGATTGTAGTCTGGGACGGTGGTCCTCGTTGATCTCGTGGCG GGCCCTATTGCCTTAGCAATAACCGCACATCCGGCCTTCCAGGGAACCCT TCGTTTCAAGACCGCTCTGTGACAGGCAAATCGGTGTCGTCGGCTCTCTC TATCCTGTGACATCTTACTACTGCAGTACATACCGTGCCGTCGTGGTTGT GGCTTAGGATCTTGCCTCCCATGTACACAGGCACACTCAAAACACACACC TTCATACCCCCCTCCAACATGTCGAATGCCGATATGCTCAAGTCCGCGTT CCCTGTCACGGCTTGTCGTCTTTCTTGCCTTTCAACGTCTTATCTTGCAT TGCGTTGTCCTATCTTGGAGTATTCTCCTACCTTATATGCTCCTATCTTA TTTTCTCATCTTCTACATTGCAGTATTGCCTTGTCTTATATAGGAGTACT TCATCTTATTACATCGTCTTATTTTATCTTGCCTCACCTTATACGGGGTA TTGTTCCGTGTATCTTGCATTATCTCATCTCTATGTTGTCTTATACTACC TTGTCTTGATCTTATATGGAGTATCGTTCTTTATATCTTGCATTATCTCA TCTCTATGTTGTCTTATCTTGTACCTTGTACGGAATATTTACTGTGTATC TTACATTAGACTATATAATCTCTATTATGTCGTCTTATCTCACCTTGTCT TAACCTTATACGGAGTATTGTGCTATGTATCTTGCATTATCTCATCTCTA TGTTGTCTTTTCTTGTACCTTGTATGGAATATTTACTGCTGTGTATCTTA CATTAGACTATACGAAAAAGTATCATCTCTATTATGTTGTCTTATCTTAC CTTATCCGGCCTTGTCTGGTCGTGTCCAGTGTGACCGGGACAAGCTGGGC GTGCGGTACCGGGGCCAGGGGAACCACGCGAAGGACTGGGGAACCGTCCG CGCCAACCACCCCCTGCCGCGCCGCCGGCGGGTCTCGTACTTCGAGATCA CCATCGCGGCCATGGGCGACCTCTGCAACATCACCATCGGCCTCGTCCCC GACTCCTTCCCCATGGACAAGCAGCCGGGCGCCGAGGTCCGTGCCCTCTC CTCCTTCTCCGTCTCTGGCCGTACGTTTCGGAGAGGGTGCTTGCATCTTG CATGTGGATGTAGCGGTCGGGTCAGCGCTTTTATGCGGCCAGAGCTGTGC GTGTGTGTGTGTGTTGAAGCTCTCATTGCGGCTTGTATGGGATCAGCGCT TTTATGTGGTTAAGGGCTGGGTGCCTGGTGGGCTGAATGAAGCAAGCCCC CATTGCCGCTTGTTTCGGTTCAGTAAAAACACCCACCCGTTTTGGGCAGT CAAGTGACACCCCACACCGTAAAAGTTTCTCCGTTTCAGGGTCGCGGAGA TGCAAGCGCGTGTGCGGCAGTGACCTATTGATACCGTTAAATACGATAAT CATAATACTATGTAGCTTTACTCCATTGACATGCCCCCGACGATTCGTTT CTGTGTTTCTCAGGGCGCATCGTACGGCCTAGAGGGGGCCTCAGGCGAGG CTCTTTCAGGGGGGCCCCGCGGCCCGAACTTTGCAAACTCTATCTCCACG GGCGATACCGTGGGGCTCGGCGTCAACTTCAAGAAAAGAGAGGTATGTAT GATCATACGTGTGCGTGTAAAAATCATGTGTTCGGCGTCAACTTCAAGAA ACGAGAAGTGCGTGTTCGGACAGCCCTCGGCTAGATCTTTCCAACGCTAC CCTTTTTGGCACTGGCACTCTTCTTGCTGGGGAGGAATCGAGCTTCGAAA ATTTGCCCCGGGGGTGTGGTATCTTGTGTCACCTACGGTATGTGTTCGCT GGTGCTGTTTGGTCGTTGGAGGCTTGGAGCACAAGCAGAAGGGGGCCTTT GGTCGGTTGTGTCACGTGCTGTCATCAGGTAGGTACTGCTGTAGCAACCA CGGAACACAGGAGCGACGCACTGCTGTGCAGAGCTTATTTACCGCTGAAG CTCTCAAGGTCTCCACTCCTAAAAACTGTAGGCGTTCGTTACCCCGCGCG CCCCAACCATTGAAAAATAAACCATTATGTATCGCGCCGAAGAAAAAAAG CTGAGCTGATTTCATTTCCAGCGAGAAGGTATTCCGGCGGATATACATAG ATACACGTGTACATACATACCTGAATCATGGCTTGGGAGAGACACTACAC TCCTCCAGGGACCCTCTGGCAGCTTGGGCCAGCCTGCCGCACGCACCTAC CCACCCGCTTTTTTACCAAATATTGTGTGCGACTATGGACTCATCTTCGT CGAGCCTTCATGCAAGCAGCACACGCGGTAATCCCCGCTCTTTTTGGCCA CGGACGGTCCGACGGAGCCCCCACCCCCCACCCCCCTCTTGCCCCCCTCC CCCCCCAAAATATACATGTATGTTGTTGTTGTTGTTGTTGTTGTTGTTGT TGTTGTTGTTTGTCTTGACATGAAAATCATTCCGACCTCTCTGAATGCAG CATCTCCATATTCATGTCCGTACTTTTCTATTTAATCCAACGATGCGGCC GATTCCCGTGTGGTCACAGACACTAACTAACCTTACCCTACACAAAGGAA AGGGCAGAAAATATTTAGTAGTCTTTTATGTACAACTGAGAAATAAAGAA ATAAAATAAAAAATCTCCCCTTGGTATTAATTTCGTTTCGTGCATGCGCC TATTAATGCTTGATTTCAACAGGCCTTCCTTACGCACAACGGGCGGCTCC TGGGCTCGGCCTTCCCGGGCATCCGGTGCGCGCTGGACGCGGCGGGACTG TACCCCTGCGTGGGTTTGCACGGCCCCGGGGAGGCCGTGCGGATCAACTT CGGGCAGCGGCCGTTCCTGTTCGACCTCGGGGCGAGCGTGAAGCGGGAGG ACGTCAGGGAGCAGGCCGCCGTCGCCGCGGTGCCGGTGTGCCCGTCGCTC CTGAGGTCCCTCGTGAGAGACTACCTCCTGCACCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7182:113..3748-

>mRNA_L-elsbetiae_contig7182.16020.1 ID=mRNA_L-elsbetiae_contig7182.16020.1|Name=mRNA_L-elsbetiae_contig7182.16020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1704bp|location=Sequence derived from alignment at L-elsbetiae_contig7182:113..3748- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCCCCCTCCGAGACACCAGCAGCACCAGCAGGCGGACGAGAGCTC
ATCGATGGACGAAATGGACACCTCGCCCGGGGGCGGGGGCGGGGGCAGGG
GCGGGGGGGGCTTCGAGGCGAAAGGGTGGGGCCCTGGGGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGACCACGATCGAGAATTCTTCGAGAACGG
AGAGTACCTCCCGTCCAGGATAGACACCACGAAGAACTCGTACCACGTGG
TGATGGGGCCCCCTCCGAGACACCAGCAGCACCAGCAGGCGGACGAGAGC
TCATCGATGGACGAAATGGACACCTCGCCCGGGGGCGGGGGCGGGGGCAG
GGGCGGGGGGGGCTTCGAGGCGAAAGGGTGGGGCCCTGGGGAAGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGACCACGATCGAGAATTCTTCGAGAAC
GGAGAGTACCTCCCGTCCAGGATAGACACCACGAAGAACTCGTACCACGT
GGTGTGTGACCGGGACAAGCTGGGCGTGCGGTACCGGGGCCAGGGGAACC
ACGCGAAGGACTGGGGAACCGTCCGCGCCAACCACCCCCTGCCGCGCCGC
CGGCGGGTCTCGTACTTCGAGATCACCATCGCGGCCATGGGCGACCTCTG
CAACATCACCATCGGCCTCGTCCCCGACTCCTTCCCCATGGACAAGCAGC
CGGGCGCCGAGTGTGACCGGGACAAGCTGGGCGTGCGGTACCGGGGCCAG
GGGAACCACGCGAAGGACTGGGGAACCGTCCGCGCCAACCACCCCCTGCC
GCGCCGCCGGCGGGTCTCGTACTTCGAGATCACCATCGCGGCCATGGGCG
ACCTCTGCAACATCACCATCGGCCTCGTCCCCGACTCCTTCCCCATGGAC
AAGCAGCCGGGCGCCGAGGGCGCATCGTACGGCCTAGAGGGGGCCTCAGG
CGAGGCTCTTTCAGGGGGGCCCCGCGGCCCGAACTTTGCAAACTCTATCT
CCACGGGCGATACCGTGGGGCTCGGCGTCAACTTCAAGAAAAGAGAGGGC
GCATCGTACGGCCTAGAGGGGGCCTCAGGCGAGGCTCTTTCAGGGGGGCC
CCGCGGCCCGAACTTTGCAAACTCTATCTCCACGGGCGATACCGTGGGGC
TCGGCGTCAACTTCAAGAAAAGAGAGGCCTTCCTTACGCACAACGGGCGG
CTCCTGGGCTCGGCCTTCCCGGGCATCCGGTGCGCGCTGGACGCGGCGGG
ACTGTACCCCTGCGTGGGTTTGCACGGCCCCGGGGAGGCCGTGCGGATCA
ACTTCGGGCAGCGGCCGTTCCTGTTCGACCTCGGGGCGAGCGTGAAGCGG
GAGGACGTCAGGGAGCAGGCCGCCGTCGCCGCGGTGCCGGTGTGCCCGTC
GCTCCTGAGGTCCCTCGTGAGAGACTACCTCCTGCACCAGGCCTTCCTTA
CGCACAACGGGCGGCTCCTGGGCTCGGCCTTCCCGGGCATCCGGTGCGCG
CTGGACGCGGCGGGACTGTACCCCTGCGTGGGTTTGCACGGCCCCGGGGA
GGCCGTGCGGATCAACTTCGGGCAGCGGCCGTTCCTGTTCGACCTCGGGG
CGAGCGTGAAGCGGGAGGACGTCAGGGAGCAGGCCGCCGTCGCCGCGGTG
CCGGTGTGCCCGTCGCTCCTGAGGTCCCTCGTGAGAGACTACCTCCTGCA
CCAG
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