mRNA_L-elsbetiae_contig7173.16008.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7173.16008.1
Unique NamemRNA_L-elsbetiae_contig7173.16008.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7173.16008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7173contigL-elsbetiae_contig7173:8268..8666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size399
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7173.16008.1prot_L-elsbetiae_contig7173.16008.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7173 8281..8613 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.390474-UTR-L-elsbetiae_contig7173:8267..82801622816797.390474-UTR-L-elsbetiae_contig7173:8267..8280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7173 8268..8280 +
1691683820.8486676-UTR-L-elsbetiae_contig7173:8267..82801691683820.8486676-UTR-L-elsbetiae_contig7173:8267..8280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7173 8268..8280 +
1622816797.4165733-UTR-L-elsbetiae_contig7173:8613..86661622816797.4165733-UTR-L-elsbetiae_contig7173:8613..8666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7173 8614..8666 +
1691683820.869824-UTR-L-elsbetiae_contig7173:8613..86661691683820.869824-UTR-L-elsbetiae_contig7173:8613..8666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7173 8614..8666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.4017258-CDS-L-elsbetiae_contig7173:8280..86131622816797.4017258-CDS-L-elsbetiae_contig7173:8280..8613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7173 8281..8613 +
1691683820.858637-CDS-L-elsbetiae_contig7173:8280..86131691683820.858637-CDS-L-elsbetiae_contig7173:8280..8613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7173 8281..8613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7173.16008.1

>prot_L-elsbetiae_contig7173.16008.1 ID=prot_L-elsbetiae_contig7173.16008.1|Name=mRNA_L-elsbetiae_contig7173.16008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MIPMIFWQTKSRLPLSPRSGTFLAECHPFFGMGCKLPCMYGSHDLRRRAP
PQRHPLCAVLEKPRGRYYCVSGPRKSILFGSIRVSTVIVSVEAPRFCPTH
PPHVFGLMKA*
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mRNA from alignment at L-elsbetiae_contig7173:8268..8666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7173.16008.1 ID=mRNA_L-elsbetiae_contig7173.16008.1|Name=mRNA_L-elsbetiae_contig7173.16008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=399bp|location=Sequence derived from alignment at L-elsbetiae_contig7173:8268..8666+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGTCGAAGTGCATGATTCCTATGATATTTTGGCAAACTAAGAGCAGGC
TTCCATTAAGCCCACGCTCCGGCACATTTTTGGCGGAGTGTCACCCTTTC
TTTGGTATGGGCTGTAAACTACCATGTATGTACGGTAGTCATGATTTGCG
ACGTAGAGCTCCTCCTCAACGTCATCCACTTTGCGCTGTCCTTGAAAAAC
CTCGAGGACGATATTATTGCGTTTCGGGACCCCGTAAGAGTATTTTATTT
GGCTCCATACGAGTATCTACCGTAATCGTCTCTGTCGAAGCCCCCCGGTT
CTGTCCAACTCACCCCCCCCACGTTTTTGGTCTGATGAAAGCATGATTAC
TCTGTCGAAGTCCCGGGGGGTCACGTTTTTTCCAAAAAACAAAATCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7173:8268..8666+

>mRNA_L-elsbetiae_contig7173.16008.1 ID=mRNA_L-elsbetiae_contig7173.16008.1|Name=mRNA_L-elsbetiae_contig7173.16008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig7173:8268..8666+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTCCTATGATATTTTGGCAAACTAAGAGCAGGCTTCCATTAAGCCC
ACGCTCCGGCACATTTTTGGCGGAGTGTCACCCTTTCTTTGGTATGGGCT
GTAAACTACCATGTATGTACGGTAGTCATGATTTGCGACGTAGAGCTCCT
CCTCAACGTCATCCACTTTGCGCTGTCCTTGAAAAACCTCGAGGACGATA
TTATTGCGTTTCGGGACCCCGTAAGAGTATTTTATTTGGCTCCATACGAG
TATCTACCGTAATCGTCTCTGTCGAAGCCCCCCGGTTCTGTCCAACTCAC
CCCCCCCACGTTTTTGGTCTGATGAAAGCATGAATGATTCCTATGATATT
TTGGCAAACTAAGAGCAGGCTTCCATTAAGCCCACGCTCCGGCACATTTT
TGGCGGAGTGTCACCCTTTCTTTGGTATGGGCTGTAAACTACCATGTATG
TACGGTAGTCATGATTTGCGACGTAGAGCTCCTCCTCAACGTCATCCACT
TTGCGCTGTCCTTGAAAAACCTCGAGGACGATATTATTGCGTTTCGGGAC
CCCGTAAGAGTATTTTATTTGGCTCCATACGAGTATCTACCGTAATCGTC
TCTGTCGAAGCCCCCCGGTTCTGTCCAACTCACCCCCCCCACGTTTTTGG
TCTGATGAAAGCATGA
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