mRNA_L-elsbetiae_contig7166.15997.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7166.15997.1
Unique NamemRNA_L-elsbetiae_contig7166.15997.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7166.15997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7166contigL-elsbetiae_contig7166:599..1170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Exons1
Model size572
Hectar predicted targeting categoryother localisation
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.525706-UTR-L-elsbetiae_contig7166:598..8641622816796.525706-UTR-L-elsbetiae_contig7166:598..864Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7166 599..864 +
1691683820.1919844-UTR-L-elsbetiae_contig7166:598..8641691683820.1919844-UTR-L-elsbetiae_contig7166:598..864Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7166 599..864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.535891-CDS-L-elsbetiae_contig7166:864..11701622816796.535891-CDS-L-elsbetiae_contig7166:864..1170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7166 865..1170 +
1691683820.201314-CDS-L-elsbetiae_contig7166:864..11701691683820.201314-CDS-L-elsbetiae_contig7166:864..1170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7166 865..1170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7166.15997.1prot_L-elsbetiae_contig7166.15997.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7166 865..1170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7166.15997.1

>prot_L-elsbetiae_contig7166.15997.1 ID=prot_L-elsbetiae_contig7166.15997.1|Name=mRNA_L-elsbetiae_contig7166.15997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MGWSGLVAACFSRTCVRGSNRSAVGGQTHQVITTAMVVALTTHMVSSIFT
SSPLHVHVQHLGCYLPSTSVVVKCDNTSKEKKQPWQQRKSRLQQIIFCCR
SE
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mRNA from alignment at L-elsbetiae_contig7166:599..1170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7166.15997.1 ID=mRNA_L-elsbetiae_contig7166.15997.1|Name=mRNA_L-elsbetiae_contig7166.15997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=572bp|location=Sequence derived from alignment at L-elsbetiae_contig7166:599..1170+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTCGTCCACCCGTAAGAAGGTCGCTCGATCCCGGATAATTTTTCAGTG
TAAGAATCTGCCCACTGAGAAAAGCAAAAATAATGATCTCAAATAATCAC
AGCGTAAGAAACGGCCTAAGTAGTTTTTGTGTATAGGTGCATGGAATACG
TGTGCAAAATTTCAGACACTAACTCCTGAAAACGGCGTGAGAAATCGCTG
TGGAACAGGCTTTGGGGGCATTTCCGTGAACCAGCTTGTATATATACACA
TCACTTCCAGTGTCAGATGGGTTGGTCGGGTCTCGTCGCTGCTTGCTTCT
CACGAACGTGCGTGCGTGGCAGCAACAGATCCGCCGTGGGGGGGCAGACA
CACCAGGTAATAACAACTGCCATGGTTGTCGCACTCACTACACATATGGT
ATCTTCTATCTTCACATCTTCACCGCTGCACGTCCATGTACAACATCTGG
GCTGTTATCTCCCTTCTACCTCTGTTGTTGTCAAGTGCGACAATACCTCC
AAAGAAAAAAAGCAACCGTGGCAGCAAAGGAAATCACGCCTTCAACAAAT
TATTTTCTGCTGCAGGAGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7166:599..1170+

>mRNA_L-elsbetiae_contig7166.15997.1 ID=mRNA_L-elsbetiae_contig7166.15997.1|Name=mRNA_L-elsbetiae_contig7166.15997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig7166:599..1170+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTTGGTCGGGTCTCGTCGCTGCTTGCTTCTCACGAACGTGCGTGCG
TGGCAGCAACAGATCCGCCGTGGGGGGGCAGACACACCAGGTAATAACAA
CTGCCATGGTTGTCGCACTCACTACACATATGGTATCTTCTATCTTCACA
TCTTCACCGCTGCACGTCCATGTACAACATCTGGGCTGTTATCTCCCTTC
TACCTCTGTTGTTGTCAAGTGCGACAATACCTCCAAAGAAAAAAAGCAAC
CGTGGCAGCAAAGGAAATCACGCCTTCAACAAATTATTTTCTGCTGCAGG
AGCGAGATGGGTTGGTCGGGTCTCGTCGCTGCTTGCTTCTCACGAACGTG
CGTGCGTGGCAGCAACAGATCCGCCGTGGGGGGGCAGACACACCAGGTAA
TAACAACTGCCATGGTTGTCGCACTCACTACACATATGGTATCTTCTATC
TTCACATCTTCACCGCTGCACGTCCATGTACAACATCTGGGCTGTTATCT
CCCTTCTACCTCTGTTGTTGTCAAGTGCGACAATACCTCCAAAGAAAAAA
AGCAACCGTGGCAGCAAAGGAAATCACGCCTTCAACAAATTATTTTCTGC
TGCAGGAGCGAG
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