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Homology
BLAST of mRNA_L-elsbetiae_contig7164.15996.1 vs. uniprot
Match: D7FTY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY1_ECTSI) HSP 1 Score: 103 bits (257), Expect = 1.360e-22 Identity = 60/101 (59.41%), Postives = 72/101 (71.29%), Query Frame = 3
Query: 33 RGGSPRAGVNKKFLLNTVHGLKSHNKREEEEDCWRQHNLDQNKANKANGRSRSREACRRERRDNSTDAVHEAASPISEVDTRQFWAEQKRKAMTALSTPPV 335
RGGS RAGVNK FLLNTVHGLKSHNKREEEEDCWRQH L+Q +A R + +A R RR+ D +AS S+VD R+FWAE+K + MTA +TP +
Sbjct: 8 RGGSGRAGVNKNFLLNTVHGLKSHNKREEEEDCWRQHGLEQ----RARERLLAHDA-NRNRRNVPADGGDTSASHASDVDARRFWAERKERTMTA-TTPAI 102
BLAST of mRNA_L-elsbetiae_contig7164.15996.1 vs. uniprot
Match: A0A6H5KLX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX3_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 6.990e-21 Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 3
Query: 33 RGGSPRAGVNKKFLLNTVHGLKSHNKREEEEDCWRQHNLDQNKANKANGRSRSREACRRERRDNSTDAVHEAASPISEVDTRQFWAEQKRKAMTALSTPPV 335
RGGS RAGVNK FLLNTVHGL+SHNKREEEEDCWRQ+ L+Q +A R + +A R R+ D +AS S+VD R+FWAE+K +AMTA +TP +
Sbjct: 19 RGGSSRAGVNKNFLLNTVHGLQSHNKREEEEDCWRQYGLEQ----RARERLLAHDA-NRNRQKFPADGGDTSASHASDVDARRFWAERKERAMTA-TTPAI 113
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-07_002810.1 |
| Exons | 2 |
| Model size | 1066 |
| Cds size | 636 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816796.280519-UTR-L-elsbetiae_contig7164:7746..7827 | 1622816796.280519-UTR-L-elsbetiae_contig7164:7746..7827 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7164 7747..7827 - |
| 1691683820.0155888-UTR-L-elsbetiae_contig7164:7746..7827 | 1691683820.0155888-UTR-L-elsbetiae_contig7164:7746..7827 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7164 7747..7827 - |
| 1622816796.2914085-UTR-L-elsbetiae_contig7164:8372..8710 | 1622816796.2914085-UTR-L-elsbetiae_contig7164:8372..8710 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7164 8373..8710 - |
| 1691683820.0271318-UTR-L-elsbetiae_contig7164:8372..8710 | 1691683820.0271318-UTR-L-elsbetiae_contig7164:8372..8710 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7164 8373..8710 - |
| 1622816796.3137252-UTR-L-elsbetiae_contig7164:9346..9357 | 1622816796.3137252-UTR-L-elsbetiae_contig7164:9346..9357 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7164 9347..9357 - |
| 1691683820.048545-UTR-L-elsbetiae_contig7164:9346..9357 | 1691683820.048545-UTR-L-elsbetiae_contig7164:9346..9357 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7164 9347..9357 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816796.301646-CDS-L-elsbetiae_contig7164:8710..9346 | 1622816796.301646-CDS-L-elsbetiae_contig7164:8710..9346 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7164 8711..9346 - |
| 1691683820.037942-CDS-L-elsbetiae_contig7164:8710..9346 | 1691683820.037942-CDS-L-elsbetiae_contig7164:8710..9346 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7164 8711..9346 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7164.15996.1 >prot_L-elsbetiae_contig7164.15996.1 ID=prot_L-elsbetiae_contig7164.15996.1|Name=mRNA_L-elsbetiae_contig7164.15996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
MQGQAGGRGGSPRAGVNKKFLLNTVHGLKSHNKREEEEDCWRQHNLDQNK
ANKANGRSRSREACRRERRDNSTDAVHEAASPISEVDTRQFWAEQKRKAM
TALSTPPVGAPLTVGRCKSRERARSDGSADGATLSDDDSKKKRRRKGEKK
AKKKKKRKRERYNSGSSSRSSSDSEVDDESRLDGGKASDKGHRQRKRKKS
KKDSSRKKSTT* back to topmRNA from alignment at L-elsbetiae_contig7164:7747..9357- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig7164.15996.1 ID=mRNA_L-elsbetiae_contig7164.15996.1|Name=mRNA_L-elsbetiae_contig7164.15996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1611bp|location=Sequence derived from alignment at L-elsbetiae_contig7164:7747..9357- (Laminarionema elsbetiae ELsaHSoW15)
CTTTGTTGGCTATGCAGGGGCAAGCAGGAGGAAGGGGAGGGAGTCCTCGT
GCGGGTGTCAACAAGAAGTTTCTCCTGAACACGGTGCACGGACTGAAGTC
GCATAACAAGCGGGAGGAGGAGGAGGACTGCTGGAGACAGCACAACTTGG
ACCAGAATAAGGCGAATAAGGCGAACGGGCGGAGCCGTTCTCGCGAAGCC
TGCCGCCGAGAGCGACGCGATAACTCGACGGATGCGGTACATGAAGCAGC
GAGCCCCATCTCCGAGGTCGATACTCGCCAATTCTGGGCGGAGCAGAAGC
GAAAGGCGATGACTGCTCTGTCGACTCCGCCTGTCGGCGCTCCGCTCACA
GTCGGCCGGTGTAAGTCAAGAGAGCGAGCGCGTTCCGACGGAAGCGCCGA
CGGGGCGACCCTTTCCGATGATGATAGTAAGAAGAAGAGGAGGAGAAAGG
GAGAAAAGAAGGCCAAGAAAAAGAAAAAACGAAAGCGGGAGAGATATAAC
AGCGGCAGCAGCAGCAGAAGTTCGTCAGACAGCGAGGTCGATGATGAGAG
CCGGCTGGACGGGGGCAAAGCCAGCGACAAAGGTCACCGCCAAAGAAAGC
GGAAGAAGTCAAAGAAAGACAGCAGTAGAAAGAAGAGCACAACATGATAA
CTACGCGGCCAAGGCGACTGGCAGTGAGTTGGCCGTGAGTTGGAGCTGAG
ACAAAGGTCGTCGCCGCCAAAGTAGGCGGGAGAAGAGAAACACAGCAGTA
TGTACTCTACATACCATGGTATGTAGTACCTAGGGAGGACGAGCACGGCA
TGAGAACTACGCGGCGGCTGTGATTTGGAGCTTGCGCTCTACTTCGACGG
AATGGAGCAGGATATGTTCTTCGGTTGGTCTTCGGGCAGTGAGAGGCGAG
TGGAGCTCGAACCTACATACACAGCATGGACAGAGGCCGGAAAATTGGCT
ATTGACTGGGAGATTTGTAACTTCTGGTCTGCTAGGTACGTGCTGGTTGT
GGCGTGGTGGAACTTTGACGCGTTTGTTTACATATGTGCAGAATGCGGTT
AACTATTTACTAGACTATAGGCACAAACGTGTTTTCCCAACGTGTAACGC
AAAAGCAAATAGTTTTGGAGTCGTTGTACTTGGGTAAGCGCCCGCGAGCA
AGCCTTGCAACTACTGTGATTCCACGCTTGCTCGCAAATACTGATCAATG
TTTGCGCGGCGCTGCGGAAGCGGTTCAACTTGTGCCAGAAACGATGTGAT
TTTAGTCAAATAACTCCATGGGGAGGGCTCCCCGCTCGGGTGTTGTCATA
ATTCCGTCTTACACCAAAGTTCTCCGCGGCAAGGGAGATTTCGATATTTC
CTCCCATGAACACGAGGAACCCTCGTTGGGGGGCCAGTCGTGCTTTCGGG
TGGCATATTCGCTCTGCACACATTGCGTACCGCGGAAGACTGCGCGTGTA
GGTTTAATTGGCGCGCATATGGAATGTTGCAGTTAGTAACTGACCCTGAT
TTTCATTTCTATTCACTCTCTCCGGGATAGCGCCGTTGCTGAGGGACCAT
GCTGGTGGAGCCAGGCGTTGCAGCAGAAATGCGAATTGGCCTGCCGCTGG
AGCTGCCGACG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig7164:7747..9357- >mRNA_L-elsbetiae_contig7164.15996.1 ID=mRNA_L-elsbetiae_contig7164.15996.1|Name=mRNA_L-elsbetiae_contig7164.15996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1272bp|location=Sequence derived from alignment at L-elsbetiae_contig7164:7747..9357- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGGGCAAGCAGGAGGAAGGGGAGGGAGTCCTCGTGCGGGTGTCAA
CAAGAAGTTTCTCCTGAACACGGTGCACGGACTGAAGTCGCATAACAAGC
GGGAGGAGGAGGAGGACTGCTGGAGACAGCACAACTTGGACCAGAATAAG
GCGAATAAGGCGAACGGGCGGAGCCGTTCTCGCGAAGCCTGCCGCCGAGA
GCGACGCGATAACTCGACGGATGCGGTACATGAAGCAGCGAGCCCCATCT
CCGAGGTCGATACTCGCCAATTCTGGGCGGAGCAGAAGCGAAAGGCGATG
ACTGCTCTGTCGACTCCGCCTGTCGGCGCTCCGCTCACAGTCGGCCGGTG
TAAGTCAAGAGAGCGAGCGCGTTCCGACGGAAGCGCCGACGGGGCGACCC
TTTCCGATGATGATAGTAAGAAGAAGAGGAGGAGAAAGGGAGAAAAGAAG
GCCAAGAAAAAGAAAAAACGAAAGCGGGAGAGATATAACAGCGGCAGCAG
CAGCAGAAGTTCGTCAGACAGCGAGGTCGATGATGAGAGCCGGCTGGACG
GGGGCAAAGCCAGCGACAAAGGTCACCGCCAAAGAAAGCGGAAGAAGTCA
AAGAAAGACAGCAGTAGAAAGAAGAGCACAACATGAATGCAGGGGCAAGC
AGGAGGAAGGGGAGGGAGTCCTCGTGCGGGTGTCAACAAGAAGTTTCTCC
TGAACACGGTGCACGGACTGAAGTCGCATAACAAGCGGGAGGAGGAGGAG
GACTGCTGGAGACAGCACAACTTGGACCAGAATAAGGCGAATAAGGCGAA
CGGGCGGAGCCGTTCTCGCGAAGCCTGCCGCCGAGAGCGACGCGATAACT
CGACGGATGCGGTACATGAAGCAGCGAGCCCCATCTCCGAGGTCGATACT
CGCCAATTCTGGGCGGAGCAGAAGCGAAAGGCGATGACTGCTCTGTCGAC
TCCGCCTGTCGGCGCTCCGCTCACAGTCGGCCGGTGTAAGTCAAGAGAGC
GAGCGCGTTCCGACGGAAGCGCCGACGGGGCGACCCTTTCCGATGATGAT
AGTAAGAAGAAGAGGAGGAGAAAGGGAGAAAAGAAGGCCAAGAAAAAGAA
AAAACGAAAGCGGGAGAGATATAACAGCGGCAGCAGCAGCAGAAGTTCGT
CAGACAGCGAGGTCGATGATGAGAGCCGGCTGGACGGGGGCAAAGCCAGC
GACAAAGGTCACCGCCAAAGAAAGCGGAAGAAGTCAAAGAAAGACAGCAG
TAGAAAGAAGAGCACAACATGA back to top
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