mRNA_L-elsbetiae_contig7164.15994.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7164.15994.1 vs. uniprot
Match: D7FTX9_ECTSI (U3 small nucleolar ribonucleoprotein protein MPP10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX9_ECTSI) HSP 1 Score: 208 bits (530), Expect = 4.480e-62 Identity = 111/120 (92.50%), Postives = 116/120 (96.67%), Query Frame = 1 Query: 1 QFLKKTMGVTEDDPQKDLKDELKHLFGKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGVEMTQDDRKRARSSKKAARRKARRQ 360 +FLKKTMGVTEDDPQK LK+ELKHLF KLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGG EM+Q+DRKR+RSSKKA RRKARRQ Sbjct: 405 EFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQ 524
BLAST of mRNA_L-elsbetiae_contig7164.15994.1 vs. uniprot
Match: A0A835YNW6_9STRA (Mpp10 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNW6_9STRA) HSP 1 Score: 145 bits (367), Expect = 1.720e-40 Identity = 75/120 (62.50%), Postives = 95/120 (79.17%), Query Frame = 1 Query: 1 QFLKKTMGVTEDDPQKDLKDELKHLFGKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGVEMTQDDRKRARSSKKAARRKARRQ 360 ++LK+ +GV EDDP KDLK+EL+ F +LCGKLDALCNFH+ P+A +PE+ V DV AIAMEE LP+ V+ A+ LAPEE+Y +KRGR A FLEGG EM QD+R RAR +KK +R KAR+Q Sbjct: 109 EYLKQALGVEEDDPSKDLKEELRRDFARLCGKLDALCNFHFRPRAHLPEVAVATDVPAIAMEEALPTGVSTADGLAPEEVYARKRGRRAVFLEGGAEMDQDERNRARLAKKRSRNKARKQ 228
BLAST of mRNA_L-elsbetiae_contig7164.15994.1 vs. uniprot
Match: A0A6V1QZP6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QZP6_HETAK) HSP 1 Score: 117 bits (294), Expect = 1.210e-28 Identity = 64/118 (54.24%), Postives = 92/118 (77.97%), Query Frame = 1 Query: 1 QFLKKTMGVTEDDPQKDLKDELKHLFGKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGVEMTQDDRKRARSSKKAARRKAR 354 ++LK+ MGV ++DP K K+E+ +F KLC KLD+L NFH+TPK IP+++V+ +V AIA+EEVLP++V+ A+ALAPEE++ K +GR+ L+ EM Q++RKRAR+ KKAARRK R Sbjct: 284 EYLKQVMGVEDEDPNKAEKEEMAKIFKKLCYKLDSLSNFHFTPKPVIPDLQVKVNVPAIALEEVLPAAVSAADALAPEEVHAKAKGRKG-VLQAREEMEQEERKRARAGKKAARRKDR 400
BLAST of mRNA_L-elsbetiae_contig7164.15994.1 vs. uniprot
Match: A0A7S1CH03_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CH03_9STRA) HSP 1 Score: 109 bits (273), Expect = 7.410e-27 Identity = 64/119 (53.78%), Postives = 84/119 (70.59%), Query Frame = 1 Query: 4 FLKKTMGVTEDDPQKDLKDELKHLFGKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGVEMTQDDRKRARSSKKAARRKARRQ 360 + + +G T DP++ L+DE+ L KL GKLD+L NFH+TPK + E+ V A+V AIA+EEV+P+ V+DA APEE+Y KKRGREA L E TQ++R AR +KKAARRK RRQ Sbjct: 127 YAAQILGATGPDPKQALRDEIAALMTKLTGKLDSLSNFHFTPKPVVEELAVTANVPAIAVEEVIPAGVSDAVLRAPEEVYAKKRGREA-VLRSATEATQEERGAARRAKKAARRKERRQ 244
BLAST of mRNA_L-elsbetiae_contig7164.15994.1 vs. uniprot
Match: A0A2P4YHT8_9STRA (U3 small nucleolar ribonucleoprotein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHT8_9STRA) HSP 1 Score: 107 bits (266), Expect = 2.160e-26 Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 1 QFLKKTMGVTEDDPQKDLKDELKHLFGKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGVEMTQDDRKRARSSKKAARRKARRQ 360 +++K MG DD K ++E++ +F LC KLDAL N+H+TPK A+ E++V+ V AIAMEEV+P SV+DA APEE+Y+KKR R L+ EMTQ +RK R++KK ARRK +RQ Sbjct: 35 EYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHARRKEKRQ 154
BLAST of mRNA_L-elsbetiae_contig7164.15994.1 vs. uniprot
Match: G4YNZ1_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YNZ1_PHYSP) HSP 1 Score: 106 bits (265), Expect = 3.010e-25 Identity = 61/120 (50.83%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 1 QFLKKTMGVTEDDPQKDLKDELKHLFGKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGVEMTQDDRKRARSSKKAARRKARRQ 360 +++K MG DD K ++E++ +F LC KLDAL N+H+TPK A+ E++V+ V AIAMEEV+P SV+DA APEE+Y KKR R L+ EMTQ +RK R++KK ARRK +RQ Sbjct: 153 EYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYDKKRKRGEAVLQSKEEMTQSERKALRNAKKHARRKEKRQ 272
BLAST of mRNA_L-elsbetiae_contig7164.15994.1 vs. uniprot
Match: H3GM34_PHYRM (U3 small nucleolar ribonucleoprotein protein MPP10 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM34_PHYRM) HSP 1 Score: 107 bits (268), Expect = 7.460e-25 Identity = 62/120 (51.67%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 1 QFLKKTMGVTEDDPQKDLKDELKHLFGKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGVEMTQDDRKRARSSKKAARRKARRQ 360 +++K MG DD K ++E++ +F LC KLDAL N+H+TPK A+ E+KV+ V AIAMEEV+P SV+DA APEE+Y+KKR R L+ EMTQ +RK R++KK ARRK RQ Sbjct: 404 EYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELKVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHARRKENRQ 523
BLAST of mRNA_L-elsbetiae_contig7164.15994.1 vs. uniprot
Match: A0A6A3Y432_9STRA (U3 small nucleolar ribonucleoprotein protein MPP10 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Y432_9STRA) HSP 1 Score: 107 bits (267), Expect = 1.020e-24 Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 1 QFLKKTMGVTEDDPQKDLKDELKHLFGKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGVEMTQDDRKRARSSKKAARRKARRQ 360 +++K MG DD K ++E++ +F LC KLDAL N+H+TPK A+ E++V+ V AIAMEEV+P SV+DA APEE+Y KKR R L+ EMTQ++RK R++KK ARRK +RQ Sbjct: 407 EYMKNAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYDKKRKRGEAVLQSKEEMTQNERKALRNAKKHARRKEKRQ 526
BLAST of mRNA_L-elsbetiae_contig7164.15994.1 vs. uniprot
Match: W2QWN2_PHYPN (U3 small nucleolar ribonucleoprotein protein MPP10 n=23 Tax=Phytophthora TaxID=4783 RepID=W2QWN2_PHYPN) HSP 1 Score: 107 bits (266), Expect = 1.400e-24 Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 1 QFLKKTMGVTEDDPQKDLKDELKHLFGKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGVEMTQDDRKRARSSKKAARRKARRQ 360 +++K MG DD K ++E++ +F LC KLDAL N+H+TPK A+ E++V+ V AIAMEEV+P SV+DA APEE+Y+KKR R L+ EMTQ +RK R++KK ARRK +RQ Sbjct: 408 EYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHARRKEKRQ 527
BLAST of mRNA_L-elsbetiae_contig7164.15994.1 vs. uniprot
Match: A0A3M6VNB8_9STRA (U3 small nucleolar ribonucleoprotein protein MPP10 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNB8_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.450e-24 Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 1 QFLKKTMGVTEDDPQKDLKDELKHLFGKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGVEMTQDDRKRARSSKKAARRKARRQ 360 +++K MG DD K ++E+ +F LC KLDAL N+H+TPK A+ E++V+ V AIAMEEV+P SV+DA APEE+Y+KKR R L+ EMTQ++RK R++KK ARRK +RQ Sbjct: 428 EYMKTAMGFEADDESKQDQEEIDVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQNERKALRNAKKHARRKEKRQ 547 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7164.15994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7164.15994.1 >prot_L-elsbetiae_contig7164.15994.1 ID=prot_L-elsbetiae_contig7164.15994.1|Name=mRNA_L-elsbetiae_contig7164.15994.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp MGVTEDDPQKDLKDELKHLFGKLCGKLDALCNFHYTPKAAIPEMKVQADVback to top mRNA from alignment at L-elsbetiae_contig7164:620..1719+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7164.15994.1 ID=mRNA_L-elsbetiae_contig7164.15994.1|Name=mRNA_L-elsbetiae_contig7164.15994.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1100bp|location=Sequence derived from alignment at L-elsbetiae_contig7164:620..1719+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7164:620..1719+ >mRNA_L-elsbetiae_contig7164.15994.1 ID=mRNA_L-elsbetiae_contig7164.15994.1|Name=mRNA_L-elsbetiae_contig7164.15994.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig7164:620..1719+ (Laminarionema elsbetiae ELsaHSoW15)back to top |