mRNA_L-elsbetiae_contig7157.15982.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7157.15982.1
Unique NamemRNA_L-elsbetiae_contig7157.15982.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7157.15982.1 vs. uniprot
Match: D7FKK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKK1_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 7.530e-89
Identity = 170/301 (56.48%), Postives = 208/301 (69.10%), Query Frame = 1 
Query:    1 REKKKFTWDWHAWNLALVSTPSLLLAYYLHGVEKQMHEEAAIREEIQERTGVSSRGFLIPKREVREEVLGMLSAGNQHGSRSRGNDDKGEDGLG--RKLPADFEAIQRRLVAVESMLRVQGDANSEDTRVAGLGK------DSTSHDTSDPSQRSKVTRARNTAREEDSSQVAATGELSTMDKAIGIASAAGSWVVRAGERQGQRLLQLGQDWLAKDNRQEDSTLPEKSGLRKGGTAEHHAPGMVVAEVQRLEELPSRKASDRLGKSITSKTGEDTAAVVSDSSKEGAEGAWRRGELDGND 879
            REK+KFTWDWHAWNLA VSTPSL+LAYYLHGVEKQM E+AAIREEIQERTGVSSRGFLIPK+EVREEVLGMLSAGNQ G+ + G    GE  LG  R +PAD E+I+ RL  +E ML +QG ++S  T  AG+        DST   TS   Q  +V  ARN A + DSS  A   E+ST+D+AI   SAAGSW+++ GE QG+     G+ W+A+D RQED+T  EK G RK GT  H  PG   A+V+R E+L ++  ++R+  S    TGE++A V SDS K    GAWRRG+LD ND
Sbjct:   26 REKRKFTWDWHAWNLAFVSTPSLVLAYYLHGVEKQMLEDAAIREEIQERTGVSSRGFLIPKKEVREEVLGMLSAGNQPGN-AGGEGGAGEQQLGHERHVPADSESIEGRLATIERMLSMQGGSSSS-TPGAGIDNGSGPMTDSTLSGTSGSGQGKRVHSARNAASKADSSSGA---EVSTLDRAIETVSAAGSWLLQTGEAQGKXXXXXGRSWMAEDERQEDATPSEKPGSRKIGTG-HQEPGANHADVRRREDLAAKALAERVANSSAGSTGEESALVESDS-KGSHSGAWRRGKLDEND 319
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7157.15982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKK1_ECTSI7.530e-8956.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7157contigL-elsbetiae_contig7157:664..2898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_001790.1
Exons3
Model size891
Cds size891
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7157.15982.1prot_L-elsbetiae_contig7157.15982.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7157 664..2898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.093595-CDS-L-elsbetiae_contig7157:663..9331622816795.093595-CDS-L-elsbetiae_contig7157:663..933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7157 664..933 +
1691683819.0889328-CDS-L-elsbetiae_contig7157:663..9331691683819.0889328-CDS-L-elsbetiae_contig7157:663..933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7157 664..933 +
1622816795.1072302-CDS-L-elsbetiae_contig7157:1966..20811622816795.1072302-CDS-L-elsbetiae_contig7157:1966..2081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7157 1967..2081 +
1691683819.0984206-CDS-L-elsbetiae_contig7157:1966..20811691683819.0984206-CDS-L-elsbetiae_contig7157:1966..2081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7157 1967..2081 +
1622816795.1182532-CDS-L-elsbetiae_contig7157:2392..28981622816795.1182532-CDS-L-elsbetiae_contig7157:2392..2898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7157 2393..2898 +
1691683819.1082292-CDS-L-elsbetiae_contig7157:2392..28981691683819.1082292-CDS-L-elsbetiae_contig7157:2392..2898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7157 2393..2898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7157.15982.1

>prot_L-elsbetiae_contig7157.15982.1 ID=prot_L-elsbetiae_contig7157.15982.1|Name=mRNA_L-elsbetiae_contig7157.15982.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=297bp
REKKKFTWDWHAWNLALVSTPSLLLAYYLHGVEKQMHEEAAIREEIQERT
GVSSRGFLIPKREVREEVLGMLSAGNQHGSRSRGNDDKGEDGLGRKLPAD
FEAIQRRLVAVESMLRVQGDANSEDTRVAGLGKDSTSHDTSDPSQRSKVT
RARNTAREEDSSQVAATGELSTMDKAIGIASAAGSWVVRAGERQGQRLLQ
LGQDWLAKDNRQEDSTLPEKSGLRKGGTAEHHAPGMVVAEVQRLEELPSR
KASDRLGKSITSKTGEDTAAVVSDSSKEGAEGAWRRGELDGNDRQR*
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mRNA from alignment at L-elsbetiae_contig7157:664..2898+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7157.15982.1 ID=mRNA_L-elsbetiae_contig7157.15982.1|Name=mRNA_L-elsbetiae_contig7157.15982.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2235bp|location=Sequence derived from alignment at L-elsbetiae_contig7157:664..2898+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGAAAAGAAGAAGTTCACGTGGGATTGGCATGCCTGGAACTTGGCTCT
AGTGTCCACCCCTTCCTTGCTGTTGGCCTACTACCTCCATGGGGTGGAGA
AGCAAATGCACGAGGAAGCGGCAATTCGGGAGGAAATCCAGGAGCGCACG
GGAGTTAGCAGCCGTGGCTTTTTGATACCGAAGAGAGAGGTCCGGGAAGA
GGTGCTGGGTATGCTGAGTGCTGGAAACCAGCATGGGAGCAGATCAAGAG
GCAACGACGACAAAGGAGAGGTAAAACGCCAGCCCCGGCCTCCATAATAG
TTATTTGGACGGGTGCTCAGCAGTAGCCATTGTTTCCTCTCCTGTGATGG
TCACTGAAACGTTGTGGGGAATATCCTGTGTATCCTTGGATGTAGAACAG
GAGGTACACCAGCGATGGGTGGGCTTGTAGGAACAGCAGTTGTCAGTGTG
TTTCTATGTAATGCACATTCGTTTGCAAGTCGTAGTCTGGCTTGGAGAGC
ATTTTCTTCCTAACACCGGTGGTTTAGTACTCGCAGTGACACGATCTGGC
GCTCCTGGCGGCCACACATCAGCGCGAGCAACAGTAAACATATTTTCCCA
GAGTGCGTGCGGACACCCTTGAACTCATAAATACCCGCCAATGGGTTATT
ACAAGCTCCCGAAAACGCGGCCGAAAAGGCTTGGTTTGAAGTTACCCATG
GGATAGCGTTCAATATGGCAAACTCCGGAGTACATTTTTACCTCCCCCGC
GCCCACCGCGCTGCCGAAAGAGATTCACCTGCGTGATCGCACGCACGGGT
TTGGTCGACGTCCGGTTGGCATCGACGCTCTACATACAACAAGTTGCGTG
CGCTAGGCAACCAAGCTACCTCGTATTGTTTCCGCGTTGCGTTTTTGTCG
CAATAGCCATGAGTGATGGTCGAGTTATATCGCAATGTGCGAGATGAACC
TCGGCTCCGCTCGTGTGCTTGTTTTAAGAGAGAGCGGGGCGACGGTGTGA
CGGCCGAATGGTTGCGTTATTGTCGCGATAACCGTGGGTGATGGTCGAGT
TAGGTCACGTTGTGCGTGGCGAACCTCAGCTCCGCACGTGTGCGTGTTTA
GAGAGAGTGCGACTCTGAGACGGCTTGAGTACTTGACGCACAACGGAAGC
GATTGAGAATTGTCCGCACCCACAGCCGCATGAAGACATGGCAAACGGTT
GGCACCCTATCCCAGATTGCGCGACTCAGATCCCCCAAGCTGCACCTCCA
ATTCAACTCCTCTCTATTTTTGCTTTCCACCTGGACAGGATCAGATCGAC
GAGGATGGCCTGGGAAGGAAATTGCCGGCCGATTTCGAGGCCATCCAGCG
AAGACTGGTGGCTGTAGAGAGCATGCTGCGCGTGCAGGGCGATGCCAACT
CGGAGGATACCAGAGTAGGTGAGGTTATGGAGGAAGCAGGGAGGACCATG
GACCGGTTCACCCGTTCTAGGTGGCAAGGGCGCAGCATGATTTCCTCGTC
CAGATAAAAATTGTTGTGCGGGGGTGCGAGCGTACTGTACTTCTTCATTC
ATGAGAGACCTGCGTATACACCACGACTCTAAAGTTCTTGAGCGATTTGA
TTTGATGCAGCTGTAGTGTGTCTGCTCTCCAAACCACCTATGCAGCAATG
GGCACACACCCATGCTTCTTGAGCACCGACACACTGTCGCTTCGAACCCC
GTTTACGGCGTGCCGCCAACTCTCTGCAGCAGGGCTAGGTAAGGACTCGA
CATCCCACGACACATCTGATCCTAGCCAACGGAGCAAAGTCACCCGCGCC
AGGAACACGGCAAGAGAGGAAGACAGCTCCCAGGTCGCAGCGACGGGCGA
GCTGTCAACCATGGACAAGGCCATAGGAATCGCATCCGCTGCGGGAAGCT
GGGTCGTACGAGCTGGCGAGAGGCAAGGACAACGCCTTTTGCAGTTAGGC
CAGGATTGGCTGGCTAAGGACAATCGTCAAGAAGATTCAACCTTGCCGGA
AAAGTCCGGGTTAAGAAAGGGCGGGACGGCCGAACACCATGCGCCAGGGA
TGGTTGTCGCGGAGGTTCAGCGACTAGAAGAGCTACCTTCCAGGAAGGCA
TCAGATCGTTTAGGAAAGAGCATTACCAGCAAAACAGGCGAAGACACAGC
AGCAGTAGTGAGCGATAGTAGCAAAGAAGGCGCGGAAGGGGCGTGGCGTC
GAGGGGAGCTGGACGGAAACGACAGGCAAAGATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7157:664..2898+

>mRNA_L-elsbetiae_contig7157.15982.1 ID=mRNA_L-elsbetiae_contig7157.15982.1|Name=mRNA_L-elsbetiae_contig7157.15982.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1782bp|location=Sequence derived from alignment at L-elsbetiae_contig7157:664..2898+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGAAAAGAAGAAGTTCACGTGGGATTGGCATGCCTGGAACTTGGCTCT
AGTGTCCACCCCTTCCTTGCTGTTGGCCTACTACCTCCATGGGGTGGAGA
AGCAAATGCACGAGGAAGCGGCAATTCGGGAGGAAATCCAGGAGCGCACG
GGAGTTAGCAGCCGTGGCTTTTTGATACCGAAGAGAGAGGTCCGGGAAGA
GGTGCTGGGTATGCTGAGTGCTGGAAACCAGCATGGGAGCAGATCAAGAG
GCAACGACGACAAAGGAGAGAGGGAAAAGAAGAAGTTCACGTGGGATTGG
CATGCCTGGAACTTGGCTCTAGTGTCCACCCCTTCCTTGCTGTTGGCCTA
CTACCTCCATGGGGTGGAGAAGCAAATGCACGAGGAAGCGGCAATTCGGG
AGGAAATCCAGGAGCGCACGGGAGTTAGCAGCCGTGGCTTTTTGATACCG
AAGAGAGAGGTCCGGGAAGAGGTGCTGGGTATGCTGAGTGCTGGAAACCA
GCATGGGAGCAGATCAAGAGGCAACGACGACAAAGGAGAGGATGGCCTGG
GAAGGAAATTGCCGGCCGATTTCGAGGCCATCCAGCGAAGACTGGTGGCT
GTAGAGAGCATGCTGCGCGTGCAGGGCGATGCCAACTCGGAGGATACCAG
AGTAGGATGGCCTGGGAAGGAAATTGCCGGCCGATTTCGAGGCCATCCAG
CGAAGACTGGTGGCTGTAGAGAGCATGCTGCGCGTGCAGGGCGATGCCAA
CTCGGAGGATACCAGAGTAGCAGGGCTAGGTAAGGACTCGACATCCCACG
ACACATCTGATCCTAGCCAACGGAGCAAAGTCACCCGCGCCAGGAACACG
GCAAGAGAGGAAGACAGCTCCCAGGTCGCAGCGACGGGCGAGCTGTCAAC
CATGGACAAGGCCATAGGAATCGCATCCGCTGCGGGAAGCTGGGTCGTAC
GAGCTGGCGAGAGGCAAGGACAACGCCTTTTGCAGTTAGGCCAGGATTGG
CTGGCTAAGGACAATCGTCAAGAAGATTCAACCTTGCCGGAAAAGTCCGG
GTTAAGAAAGGGCGGGACGGCCGAACACCATGCGCCAGGGATGGTTGTCG
CGGAGGTTCAGCGACTAGAAGAGCTACCTTCCAGGAAGGCATCAGATCGT
TTAGGAAAGAGCATTACCAGCAAAACAGGCGAAGACACAGCAGCAGTAGT
GAGCGATAGTAGCAAAGAAGGCGCGGAAGGGGCGTGGCGTCGAGGGGAGC
TGGACGGAAACGACAGGCAAAGATGACAGGGCTAGGTAAGGACTCGACAT
CCCACGACACATCTGATCCTAGCCAACGGAGCAAAGTCACCCGCGCCAGG
AACACGGCAAGAGAGGAAGACAGCTCCCAGGTCGCAGCGACGGGCGAGCT
GTCAACCATGGACAAGGCCATAGGAATCGCATCCGCTGCGGGAAGCTGGG
TCGTACGAGCTGGCGAGAGGCAAGGACAACGCCTTTTGCAGTTAGGCCAG
GATTGGCTGGCTAAGGACAATCGTCAAGAAGATTCAACCTTGCCGGAAAA
GTCCGGGTTAAGAAAGGGCGGGACGGCCGAACACCATGCGCCAGGGATGG
TTGTCGCGGAGGTTCAGCGACTAGAAGAGCTACCTTCCAGGAAGGCATCA
GATCGTTTAGGAAAGAGCATTACCAGCAAAACAGGCGAAGACACAGCAGC
AGTAGTGAGCGATAGTAGCAAAGAAGGCGCGGAAGGGGCGTGGCGTCGAG
GGGAGCTGGACGGAAACGACAGGCAAAGATGA
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