mRNA_L-elsbetiae_contig7155.15979.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7155.15979.1
Unique NamemRNA_L-elsbetiae_contig7155.15979.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7155.15979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7155contigL-elsbetiae_contig7155:8809..9411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size605
Cds size396
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.7751644-UTR-L-elsbetiae_contig7155:8808..90151622816794.7751644-UTR-L-elsbetiae_contig7155:8808..9015Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7155 8809..9015 +
1691683818.837084-UTR-L-elsbetiae_contig7155:8808..90151691683818.837084-UTR-L-elsbetiae_contig7155:8808..9015Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7155 8809..9015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.7856736-CDS-L-elsbetiae_contig7155:9015..94111622816794.7856736-CDS-L-elsbetiae_contig7155:9015..9411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7155 9016..9411 +
1691683818.8569133-CDS-L-elsbetiae_contig7155:9015..94111691683818.8569133-CDS-L-elsbetiae_contig7155:9015..9411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7155 9016..9411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7155.15979.1prot_L-elsbetiae_contig7155.15979.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7155 9016..9411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7155.15979.1

>prot_L-elsbetiae_contig7155.15979.1 ID=prot_L-elsbetiae_contig7155.15979.1|Name=mRNA_L-elsbetiae_contig7155.15979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MYRAFVLFFSSAASSVPCFVATGPKGVFTPCTTMFLDQRANARNNNSNNN
NNNNTNNISAFFCSVICFCQCVGGFWQVFSRFAEHHRSATCLFTSDVPYR
VPLLCMLPLSPLRVSSYLYPICIHTSRQNRQG
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mRNA from alignment at L-elsbetiae_contig7155:8809..9411+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7155.15979.1 ID=mRNA_L-elsbetiae_contig7155.15979.1|Name=mRNA_L-elsbetiae_contig7155.15979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=603bp|location=Sequence derived from alignment at L-elsbetiae_contig7155:8809..9411+ (Laminarionema elsbetiae ELsaHSoW15)
ACCCGGCGCGGAACGCTCCGGCATTGTAGGCGGGTGTGGGAAGCCGTTGG
CTCTCCGTAGTTCTCTTTCCCCACCTGGCGTGGTGTTTGGTTTGGTTTTT
CGACCTTTCTTTTATCTACCTTCCGGGTGTATGTACCCTACCTTTGATCT
CTGTGTCGGCGAGACGCAAGGCCCCTTCGGGGTTCAGTGTAGTACCGCCG
GGCGCGTATGTACCGTGCCTTTGTTTTATTTTTTTCTTCTGCGGCGTCGA
GTGTGCCTTGTTTCGTGGCCACGGGCCCCAAGGGTGTGTTCACACCCTGT
ACAACTATGTTTTTGGACCAGAGAGCTAATGCGAGAAACAACAACAGCAA
CAACAACAACAACAACAACACCAACAACATCTCCGCTTTTTTTTGTAGCG
TAATTTGTTTTTGTCAGTGTGTAGGTGGCTTTTGGCAAGTGTTTTCCCGG
TTCGCCGAGCATCATCGATCCGCAACATGCCTTTTCACCTCCGATGTTCC
TTACCGTGTCCCACTTTTATGCATGCTGCCTCTTTCCCCCCTCCGTGTAT
CTTCATATCTATATCCCATTTGCATACATACCTCGCGGCAGAACCGACAG
GGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7155:8809..9411+

>mRNA_L-elsbetiae_contig7155.15979.1 ID=mRNA_L-elsbetiae_contig7155.15979.1|Name=mRNA_L-elsbetiae_contig7155.15979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig7155:8809..9411+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCGTGCCTTTGTTTTATTTTTTTCTTCTGCGGCGTCGAGTGTGCC
TTGTTTCGTGGCCACGGGCCCCAAGGGTGTGTTCACACCCTGTACAACTA
TGTTTTTGGACCAGAGAGCTAATGCGAGAAACAACAACAGCAACAACAAC
AACAACAACAACACCAACAACATCTCCGCTTTTTTTTGTAGCGTAATTTG
TTTTTGTCAGTGTGTAGGTGGCTTTTGGCAAGTGTTTTCCCGGTTCGCCG
AGCATCATCGATCCGCAACATGCCTTTTCACCTCCGATGTTCCTTACCGT
GTCCCACTTTTATGCATGCTGCCTCTTTCCCCCCTCCGTGTATCTTCATA
TCTATATCCCATTTGCATACATACCTCGCGGCAGAACCGACAGGGTATGT
ACCGTGCCTTTGTTTTATTTTTTTCTTCTGCGGCGTCGAGTGTGCCTTGT
TTCGTGGCCACGGGCCCCAAGGGTGTGTTCACACCCTGTACAACTATGTT
TTTGGACCAGAGAGCTAATGCGAGAAACAACAACAGCAACAACAACAACA
ACAACAACACCAACAACATCTCCGCTTTTTTTTGTAGCGTAATTTGTTTT
TGTCAGTGTGTAGGTGGCTTTTGGCAAGTGTTTTCCCGGTTCGCCGAGCA
TCATCGATCCGCAACATGCCTTTTCACCTCCGATGTTCCTTACCGTGTCC
CACTTTTATGCATGCTGCCTCTTTCCCCCCTCCGTGTATCTTCATATCTA
TATCCCATTTGCATACATACCTCGCGGCAGAACCGACAGGGT
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