mRNA_L-elsbetiae_contig7153.15976.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7153.15976.1
Unique NamemRNA_L-elsbetiae_contig7153.15976.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7153.15976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7153contigL-elsbetiae_contig7153:6765..7540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size776
Cds size768
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.4727814-UTR-L-elsbetiae_contig7153:6764..67721622816794.4727814-UTR-L-elsbetiae_contig7153:6764..6772Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7153 6765..6772 +
1691683818.5927515-UTR-L-elsbetiae_contig7153:6764..67721691683818.5927515-UTR-L-elsbetiae_contig7153:6764..6772Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7153 6765..6772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.48508-CDS-L-elsbetiae_contig7153:6772..75401622816794.48508-CDS-L-elsbetiae_contig7153:6772..7540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7153 6773..7540 +
1691683818.6043942-CDS-L-elsbetiae_contig7153:6772..75401691683818.6043942-CDS-L-elsbetiae_contig7153:6772..7540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7153 6773..7540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7153.15976.1prot_L-elsbetiae_contig7153.15976.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7153 6773..7540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7153.15976.1

>prot_L-elsbetiae_contig7153.15976.1 ID=prot_L-elsbetiae_contig7153.15976.1|Name=mRNA_L-elsbetiae_contig7153.15976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=256bp
MGDRAGGVDEHGQDLSTAFAAHHSHQLQQQQQQQLSVSAGETGGGGSRRR
SSGSCNSGGGGAGASMSVASMDVIIETSGRLDESSHQGGSVVKDHEPGSG
GGGGDDEEISKASVSGGSAEGSDGKGGVRHEQNQVLVPVERERKVEDEEG
TAAVAAVVVEVGETTTDVAVAAAAAAAATAANRAGTAVGAGPPRLERGAT
HRTTVPVGACGGEIAENKRHPPPLAAAAAAAAATSWPRASEASVGDREAN
RNISRN
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mRNA from alignment at L-elsbetiae_contig7153:6765..7540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7153.15976.1 ID=mRNA_L-elsbetiae_contig7153.15976.1|Name=mRNA_L-elsbetiae_contig7153.15976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=776bp|location=Sequence derived from alignment at L-elsbetiae_contig7153:6765..7540+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGGAACATGGGTGATCGAGCGGGGGGCGTGGATGAGCACGGACAAGAT
TTATCGACGGCTTTTGCCGCTCATCACTCCCATCAGCTGCAGCAGCAGCA
ACAGCAGCAGCTGTCTGTGTCGGCGGGAGAGACTGGCGGAGGAGGCAGCC
GGAGGCGAAGCAGCGGTAGCTGCAACAGTGGCGGTGGTGGCGCAGGTGCA
TCGATGTCGGTGGCATCTATGGACGTGATCATTGAGACCTCAGGCCGGCT
TGATGAGTCTTCACATCAAGGCGGATCTGTTGTTAAGGACCACGAACCCG
GCAGCGGCGGTGGTGGCGGCGACGACGAAGAGATTTCCAAGGCTAGTGTG
AGCGGCGGTAGTGCAGAGGGCAGCGATGGTAAAGGCGGGGTACGACACGA
ACAGAACCAGGTTTTGGTTCCGGTGGAGAGGGAGCGGAAGGTGGAGGACG
AGGAGGGTACAGCAGCGGTGGCAGCAGTAGTGGTAGAAGTGGGTGAAACA
ACGACCGATGTAGCTGTTGCAGCAGCAGCTGCTGCCGCTGCCACCGCGGC
AAACCGTGCAGGAACGGCAGTGGGCGCCGGTCCTCCTCGACTGGAGCGAG
GAGCGACTCACCGCACCACAGTGCCGGTAGGGGCCTGTGGGGGCGAGATA
GCAGAAAACAAGAGACACCCTCCTCCTTTAGCTGCTGCTGCTGCTGCTGC
TGCTGCTACGAGCTGGCCCCGCGCTTCTGAGGCTTCGGTCGGTGATCGCG
AGGCAAACAGAAACATCAGCCGGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7153:6765..7540+

>mRNA_L-elsbetiae_contig7153.15976.1 ID=mRNA_L-elsbetiae_contig7153.15976.1|Name=mRNA_L-elsbetiae_contig7153.15976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1536bp|location=Sequence derived from alignment at L-elsbetiae_contig7153:6765..7540+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGATCGAGCGGGGGGCGTGGATGAGCACGGACAAGATTTATCGAC
GGCTTTTGCCGCTCATCACTCCCATCAGCTGCAGCAGCAGCAACAGCAGC
AGCTGTCTGTGTCGGCGGGAGAGACTGGCGGAGGAGGCAGCCGGAGGCGA
AGCAGCGGTAGCTGCAACAGTGGCGGTGGTGGCGCAGGTGCATCGATGTC
GGTGGCATCTATGGACGTGATCATTGAGACCTCAGGCCGGCTTGATGAGT
CTTCACATCAAGGCGGATCTGTTGTTAAGGACCACGAACCCGGCAGCGGC
GGTGGTGGCGGCGACGACGAAGAGATTTCCAAGGCTAGTGTGAGCGGCGG
TAGTGCAGAGGGCAGCGATGGTAAAGGCGGGGTACGACACGAACAGAACC
AGGTTTTGGTTCCGGTGGAGAGGGAGCGGAAGGTGGAGGACGAGGAGGGT
ACAGCAGCGGTGGCAGCAGTAGTGGTAGAAGTGGGTGAAACAACGACCGA
TGTAGCTGTTGCAGCAGCAGCTGCTGCCGCTGCCACCGCGGCAAACCGTG
CAGGAACGGCAGTGGGCGCCGGTCCTCCTCGACTGGAGCGAGGAGCGACT
CACCGCACCACAGTGCCGGTAGGGGCCTGTGGGGGCGAGATAGCAGAAAA
CAAGAGACACCCTCCTCCTTTAGCTGCTGCTGCTGCTGCTGCTGCTGCTA
CGAGCTGGCCCCGCGCTTCTGAGGCTTCGGTCGGTGATCGCGAGGCAAAC
AGAAACATCAGCCGGAACATGGGTGATCGAGCGGGGGGCGTGGATGAGCA
CGGACAAGATTTATCGACGGCTTTTGCCGCTCATCACTCCCATCAGCTGC
AGCAGCAGCAACAGCAGCAGCTGTCTGTGTCGGCGGGAGAGACTGGCGGA
GGAGGCAGCCGGAGGCGAAGCAGCGGTAGCTGCAACAGTGGCGGTGGTGG
CGCAGGTGCATCGATGTCGGTGGCATCTATGGACGTGATCATTGAGACCT
CAGGCCGGCTTGATGAGTCTTCACATCAAGGCGGATCTGTTGTTAAGGAC
CACGAACCCGGCAGCGGCGGTGGTGGCGGCGACGACGAAGAGATTTCCAA
GGCTAGTGTGAGCGGCGGTAGTGCAGAGGGCAGCGATGGTAAAGGCGGGG
TACGACACGAACAGAACCAGGTTTTGGTTCCGGTGGAGAGGGAGCGGAAG
GTGGAGGACGAGGAGGGTACAGCAGCGGTGGCAGCAGTAGTGGTAGAAGT
GGGTGAAACAACGACCGATGTAGCTGTTGCAGCAGCAGCTGCTGCCGCTG
CCACCGCGGCAAACCGTGCAGGAACGGCAGTGGGCGCCGGTCCTCCTCGA
CTGGAGCGAGGAGCGACTCACCGCACCACAGTGCCGGTAGGGGCCTGTGG
GGGCGAGATAGCAGAAAACAAGAGACACCCTCCTCCTTTAGCTGCTGCTG
CTGCTGCTGCTGCTGCTACGAGCTGGCCCCGCGCTTCTGAGGCTTCGGTC
GGTGATCGCGAGGCAAACAGAAACATCAGCCGGAAC
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