mRNA_L-elsbetiae_contig7150.15971.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7150.15971.1
Unique NamemRNA_L-elsbetiae_contig7150.15971.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7150.15971.1 vs. uniprot
Match: D7FU02_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU02_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 4.660e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 QTNFQHDFVATEGFRRIVDASELEQRELRLLRAGGYLRSDSETSP 135
            +TNFQ +FV TEGFRRIVDA+ELEQRE RLLRAGG+L  D+  SP
Sbjct:  128 ETNFQREFVETEGFRRIVDAAELEQRENRLLRAGGFLPPDAPPSP 172
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BLAST of mRNA_L-elsbetiae_contig7150.15971.1 vs. uniprot
Match: A0A6H5K499_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K499_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.040e-12
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 QTNFQHDFVATEGFRRIVDASELEQRELRLLRAGGYLRSDSETSP 135
            +TNFQ +FV TEGFRRIVDA+E EQRE RLL+AGG+L  DS  SP
Sbjct:   54 ETNFQREFVETEGFRRIVDAAEQEQRENRLLQAGGFLPPDSPPSP 98
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BLAST of mRNA_L-elsbetiae_contig7150.15971.1 vs. uniprot
Match: A0A6H5K0N5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0N5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 8.350e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 QTNFQHDFVATEGFRRIVDASELEQRELRLLRAGGYLRSDSETSP 135
            +TNFQ DFV TEGFRRIVDASELEQRE+RLLRA G L   + T+P
Sbjct:  292 ETNFQRDFVETEGFRRIVDASELEQREMRLLRAEGVLVPSASTTP 336
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BLAST of mRNA_L-elsbetiae_contig7150.15971.1 vs. uniprot
Match: D7FTZ7_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.990e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 QTNFQHDFVATEGFRRIVDASELEQRELRLLRAGGYLRSDSETSP 135
            +TNFQ DF+ TEGFRRIVDASELEQR++RLLRA G L   + T+P
Sbjct:  343 ETNFQRDFIETEGFRRIVDASELEQRQMRLLRAEGVLVPSASTTP 387
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BLAST of mRNA_L-elsbetiae_contig7150.15971.1 vs. uniprot
Match: A0A6H5JJQ0_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.090e-11
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QTNFQHDFVATEGFRRIVDASELEQRELRLLRAGGYLRSDSETS 132
            +TNFQ +FV TEGFRRIV+ASELEQRE RLLRAGG+L  D+  S
Sbjct:  411 ETNFQREFVETEGFRRIVEASELEQRENRLLRAGGFLPPDTPPS 454
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BLAST of mRNA_L-elsbetiae_contig7150.15971.1 vs. uniprot
Match: D7FTZ5_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.960e-10
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 QTNFQHDFVATEGFRRIVDASELEQRELRLLRAGGYLRSDSETSP 135
            +TNFQ DFV TEGFRRIV+A+ELEQR++RLL+A G+L  ++ TSP
Sbjct:  346 ETNFQTDFVETEGFRRIVNAAELEQRQIRLLQAEGFLLPNTGTSP 390
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BLAST of mRNA_L-elsbetiae_contig7150.15971.1 vs. uniprot
Match: D7FIS3_ECTSI (Similar to retinally abundant regulator of G-protein signaling hRGS-r n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS3_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 3.650e-10
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 QTNFQHDFVATEGFRRIVDASELEQRELRLLRAGGYLRSDS 123
            +TNFQ +FV TEGFRRI DASE+E RE+RLLRAGG L S S
Sbjct:  220 ETNFQREFVTTEGFRRIADASEVEHREIRLLRAGGMLPSAS 260
[Close]
BLAST of mRNA_L-elsbetiae_contig7150.15971.1 vs. uniprot
Match: A0A6H5KDM3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM3_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.650e-10
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 QTNFQHDFVATEGFRRIVDASELEQRELRLLRAGGYLRSDS 123
            +TNFQ +FV TEGFRRI DASE+E RE+RLLRAGG L S S
Sbjct:  251 ETNFQREFVTTEGFRRIADASEVEHREIRLLRAGGMLPSAS 291
[Close]
BLAST of mRNA_L-elsbetiae_contig7150.15971.1 vs. uniprot
Match: D7FU07_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU07_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.560e-9
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 QTNFQHDFVATEGFRRIVDASELEQRELRLLRAGGYLRSDS 123
            +TNFQ DFV TEGFRRI DAS LEQ+E+RLLR  G+L +D+
Sbjct:  138 ETNFQQDFVETEGFRRIADASALEQQEIRLLRKEGFLVADA 178
[Close]
BLAST of mRNA_L-elsbetiae_contig7150.15971.1 vs. uniprot
Match: A0A6H5KAT5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-9
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 QTNFQHDFVATEGFRRIVDASELEQRELRLLRAGGYLRSDSETSP 135
            +TNF+ DFV TEGFRRI++AS+ EQRELRLLRAGG L      SP
Sbjct:  373 ETNFRRDFVTTEGFRRILNASKQEQRELRLLRAGGMLLPLGTPSP 417
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7150.15971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FU02_ECTSI4.660e-1373.33Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5K499_9PHAE1.040e-1271.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0N5_9PHAE8.350e-1273.33RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTZ7_ECTSI2.990e-1168.89Similar to regulator of G-protein signaling 16 n=1... [more]
A0A6H5JJQ0_9PHAE4.090e-1172.73RGS domain-containing protein n=3 Tax=Ectocarpus T... [more]
D7FTZ5_ECTSI1.960e-1066.67Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
D7FIS3_ECTSI3.650e-1073.17Similar to retinally abundant regulator of G-prote... [more]
A0A6H5KDM3_9PHAE3.650e-1073.17RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU07_ECTSI1.560e-968.29Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5KAT5_9PHAE3.260e-966.67RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7150contigL-elsbetiae_contig7150:1555..1689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue6.7e-10
Seed eggNOG ortholog2880.D7FU02
Preferred nameRGS1
KEGG koko:K16449
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003150.1
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.3622584-CDS-L-elsbetiae_contig7150:1554..16891622816794.3622584-CDS-L-elsbetiae_contig7150:1554..1689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7150 1555..1689 -
1691683818.5247414-CDS-L-elsbetiae_contig7150:1554..16891691683818.5247414-CDS-L-elsbetiae_contig7150:1554..1689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7150 1555..1689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7150.15971.1prot_L-elsbetiae_contig7150.15971.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7150 1555..1689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7150.15971.1

>prot_L-elsbetiae_contig7150.15971.1 ID=prot_L-elsbetiae_contig7150.15971.1|Name=mRNA_L-elsbetiae_contig7150.15971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
QTNFQHDFVATEGFRRIVDASELEQRELRLLRAGGYLRSDSETSP
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mRNA from alignment at L-elsbetiae_contig7150:1555..1689-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7150.15971.1 ID=mRNA_L-elsbetiae_contig7150.15971.1|Name=mRNA_L-elsbetiae_contig7150.15971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=135bp|location=Sequence derived from alignment at L-elsbetiae_contig7150:1555..1689- (Laminarionema elsbetiae ELsaHSoW15)
CAGACAAACTTCCAGCATGATTTCGTGGCCACGGAGGGGTTCCGCAGAAT
CGTTGACGCTTCAGAACTGGAGCAGCGAGAGCTAAGGCTCTTGAGGGCCG
GGGGGTATTTACGAAGCGACTCCGAAACGTCCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7150:1555..1689-

>mRNA_L-elsbetiae_contig7150.15971.1 ID=mRNA_L-elsbetiae_contig7150.15971.1|Name=mRNA_L-elsbetiae_contig7150.15971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig7150:1555..1689- (Laminarionema elsbetiae ELsaHSoW15)
CAGACAAACTTCCAGCATGATTTCGTGGCCACGGAGGGGTTCCGCAGAAT
CGTTGACGCTTCAGAACTGGAGCAGCGAGAGCTAAGGCTCTTGAGGGCCG
GGGGGTATTTACGAAGCGACTCCGAAACGTCCCCGCAGACAAACTTCCAG
CATGATTTCGTGGCCACGGAGGGGTTCCGCAGAATCGTTGACGCTTCAGA
ACTGGAGCAGCGAGAGCTAAGGCTCTTGAGGGCCGGGGGGTATTTACGAA
GCGACTCCGAAACGTCCCCG
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