mRNA_L-elsbetiae_contig715.15967.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig715.15967.1 vs. uniprot
Match: D8LID6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LID6_ECTSI) HSP 1 Score: 466 bits (1199), Expect = 1.190e-155 Identity = 276/468 (58.97%), Postives = 315/468 (67.31%), Query Frame = 2 Query: 95 MREAREDLAMDRKQKLGRGGDTAPPRLSSSGFRSLATLLRQRVRADELGAAAPPSARSEGSAAHSAVAVKGSYFSADLTEKEKRPRKTRTLLSLCINQIGRDFLSYRADDGALAQAFLLLPPACLSRLSRSASARGTVADHNAGLLCSPGVEALWLRGRFSDEGAGTILPGLLDTAAASQERTCTPKSAADLGEVYRDG------------------------DDGHRRSAGALRKASLHTTVSRTNEAGGVEEEWESANDRIEASLRGGVSLTSLDVSSPRITVEFIKRLVVRIPSLRRLGLRGSLGVVGGPDAVCDFVPRLSGLRELDVSHCMWFCDITLRRLAKTISLGGAPVRTNHSDGEDSPDPQEILPAEPLDG--TSGWGAASAPLTNMVAFRDVAAMETPGAGLR-VSGSSRVGGDKT-SRLSGSPNRFRTFTVVCALTGVTEKGARVAEAMSPGLMVVF 1414 MR+AREDL+ DR+Q LGRGGD APPRLS++GFRSLATLLRQRVRADE+ A APP+ RSE + A VA +YFSAD TE RPRKT TLLSLCI QIGRDFL+YRADD A+A+AFLLLP CLSRLSRSASA G VADHN GLLCSPGV LWLRGRF+DEG G +LP L + R AA+L EVYRDG DDG ++ A+ H G EEEWE+A DRIEASLRGGVSLTSLD+SSPR+T F+KRL RIPSLRRLGLRGS GVVGGPD VCD VPRL+ LRELD+SHC WFCD+TLRRLAK++SL +P + + P + LD T GWGAA AP TN +AF A G+ VSG+SR G+K L S +RFRTFTVVCA T VTEKGA+ AE MSPGLMV+ Sbjct: 1 MRDAREDLSWDRRQNLGRGGDAAPPRLSATGFRSLATLLRQRVRADEIDAVAPPAVRSE-NLAGKVVAAPSNYFSADWTET--RPRKTCTLLSLCIRQIGRDFLAYRADDDAIAEAFLLLPSPCLSRLSRSASAGGNVADHNIGLLCSPGVSTLWLRGRFTDEGVGALLPAL-----NAGNRPNGGSHAAELAEVYRDGTAADCLAGNAVDTAMGTESRVASGDDG---LVALIQPAAYHAAAGEAI-VEGAEEEWETACDRIEASLRGGVSLTSLDLSSPRVTAGFVKRLTARIPSLRRLGLRGSFGVVGGPDFVCDHVPRLAALRELDLSHCTWFCDLTLRRLAKSLSLRASPAAGDPEN--QGPHAGSATYLQDLDEAETRGWGAAFAPSTNNLAFAGHAGSGPSGSDADLVSGASRESGEKELPSLGRSLHRFRTFTVVCARTAVTEKGAKAAELMSPGLMVIL 454 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig715.15967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig715.15967.1 >prot_L-elsbetiae_contig715.15967.1 ID=prot_L-elsbetiae_contig715.15967.1|Name=mRNA_L-elsbetiae_contig715.15967.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=476bp MPGRKKGRQKGAAGSKAQSARKWNDAMREAREDLAMDRKQKLGRGGDTAPback to top mRNA from alignment at L-elsbetiae_contig715:613..4584- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig715.15967.1 ID=mRNA_L-elsbetiae_contig715.15967.1|Name=mRNA_L-elsbetiae_contig715.15967.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3972bp|location=Sequence derived from alignment at L-elsbetiae_contig715:613..4584- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig715:613..4584- >mRNA_L-elsbetiae_contig715.15967.1 ID=mRNA_L-elsbetiae_contig715.15967.1|Name=mRNA_L-elsbetiae_contig715.15967.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2856bp|location=Sequence derived from alignment at L-elsbetiae_contig715:613..4584- (Laminarionema elsbetiae ELsaHSoW15)back to top |