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Homology
BLAST of mRNA_L-elsbetiae_contig7146.15965.1 vs. uniprot
Match: D8LLZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ3_ECTSI) HSP 1 Score: 224 bits (572), Expect = 1.470e-72 Identity = 109/128 (85.16%), Postives = 118/128 (92.19%), Query Frame = 1
Query: 1 ALAGTARPSARNLAETSIELAGTEKSRIAVSILYPKQWTVTKTPGKSINIQDMKYTDRAFSLAKPLPKGVKSVGDIPVSFFTDALFSLDGPYGTFGKVDDFKIVGTKTESKGKRDYRYIDLKFSAPTQ 384
A AGTARPSARNLAETSIEL G+ + IAVS+LYPKQWTVTKT GKSINIQDMKYTDRAFSLA PLP G KSVGDIP+SFFTDALFSLDGPYGTFGKVDDFK++G K+E+KGKRDYRY+DLKFSAPTQ
Sbjct: 70 ASAGTARPSARNLAETSIELNGSGQQPIAVSVLYPKQWTVTKTAGKSINIQDMKYTDRAFSLAMPLPSGTKSVGDIPLSFFTDALFSLDGPYGTFGKVDDFKVIGAKSEAKGKRDYRYVDLKFSAPTQ 197
BLAST of mRNA_L-elsbetiae_contig7146.15965.1 vs. uniprot
Match: A0A7S0LSG3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LSG3_9EUKA) HSP 1 Score: 67.0 bits (162), Expect = 1.030e-10 Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = 1
Query: 67 TEKSRIAVSILYPKQWTVTKTPGKSINIQDMKYTDRAFSLAKPLPKGVKSVGDIPVSFFTDALFSLDGPYGTFGKVDDFKIVGTKTE-----SKGKRDYRYIDLKFSAPT 381
T VS +P WT+ P +I+++D++ +D AF L+ LP+G K+ + SFF +F G YG++G VDD K++ + S GK+ YR + LKFS T
Sbjct: 107 TSSGSAEVSFAFPPAWTLAGGP--NIDVRDVRESDSAFLLSAKLPEG-KTFEQLHDSFFLSVVFDPQGKYGSYGTVDDRKVLSSDLAALTLPSGGKQTYRRLALKFSPLT 213
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 223.8 |
| Seed ortholog evalue | 4.6e-56 |
| Seed eggNOG ortholog | 2880.D8LLZ3 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2EWBM@1,2SY6C@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-14_002220.1 |
| Exons | 5 |
| Model size | 387 |
| Cds size | 384 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816793.5219586-CDS-L-elsbetiae_contig7146:5595..5629 | 1622816793.5219586-CDS-L-elsbetiae_contig7146:5595..5629 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7146 5596..5629 - |
| 1691683817.8128402-CDS-L-elsbetiae_contig7146:5595..5629 | 1691683817.8128402-CDS-L-elsbetiae_contig7146:5595..5629 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7146 5596..5629 - |
| 1622816793.5329158-CDS-L-elsbetiae_contig7146:5808..5891 | 1622816793.5329158-CDS-L-elsbetiae_contig7146:5808..5891 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7146 5809..5891 - |
| 1691683817.8243623-CDS-L-elsbetiae_contig7146:5808..5891 | 1691683817.8243623-CDS-L-elsbetiae_contig7146:5808..5891 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7146 5809..5891 - |
| 1622816793.543581-CDS-L-elsbetiae_contig7146:6626..6760 | 1622816793.543581-CDS-L-elsbetiae_contig7146:6626..6760 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7146 6627..6760 - |
| 1691683817.8338761-CDS-L-elsbetiae_contig7146:6626..6760 | 1691683817.8338761-CDS-L-elsbetiae_contig7146:6626..6760 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7146 6627..6760 - |
| 1622816793.554142-CDS-L-elsbetiae_contig7146:7116..7192 | 1622816793.554142-CDS-L-elsbetiae_contig7146:7116..7192 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7146 7117..7192 - |
| 1691683817.8443344-CDS-L-elsbetiae_contig7146:7116..7192 | 1691683817.8443344-CDS-L-elsbetiae_contig7146:7116..7192 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7146 7117..7192 - |
| 1622816793.5667856-CDS-L-elsbetiae_contig7146:8121..8178 | 1622816793.5667856-CDS-L-elsbetiae_contig7146:8121..8178 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7146 8122..8178 - |
| 1691683817.8572981-CDS-L-elsbetiae_contig7146:8121..8178 | 1691683817.8572981-CDS-L-elsbetiae_contig7146:8121..8178 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7146 8122..8178 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7146.15965.1 >prot_L-elsbetiae_contig7146.15965.1 ID=prot_L-elsbetiae_contig7146.15965.1|Name=mRNA_L-elsbetiae_contig7146.15965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
ALAGTARPSARNLAETSIELAGTEKSRIAVSILYPKQWTVTKTPGKSINI
QDMKYTDRAFSLAKPLPKGVKSVGDIPVSFFTDALFSLDGPYGTFGKVDD
FKIVGTKTESKGKRDYRYIDLKFSAPTQ back to topmRNA from alignment at L-elsbetiae_contig7146:5594..8178- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig7146.15965.1 ID=mRNA_L-elsbetiae_contig7146.15965.1|Name=mRNA_L-elsbetiae_contig7146.15965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2585bp|location=Sequence derived from alignment at L-elsbetiae_contig7146:5594..8178- (Laminarionema elsbetiae ELsaHSoW15)
GCCTTGGCGGGGACCGCTCGTCCTTCGGCTAGAAACTTGGCGGAGACGTC
GATAGAGGTGAGGCGGGGGCGTCTCTCCCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTTTCTCCCTCTGTATAGTTGTGATGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCATTTGTACGTGTGTGTGTG
TGTGGTATGTCTTCCTGAGTAAACTGCGCCGCGTGCTGCTCGCAGCGAAG
CACACATGCGGGAATATACTTGTGTAGCCCCGTAGAAGTGAATACTGTGC
ACCCTGCTACCCACGCTGGCTACGACAAGACGGAAGAGCCGATCTACTGC
ATACACCGTAGTCTCTGATGTTTTGTTTCCGCAAGGCCATGTCATGAACG
AACATTATGTTTCTGCCACGTTCTGCTGTGCTGGTTTGTCGCCGCTCAGC
ACGTTTAACAGCTATTGCTGACGTTTAGTAAGTACTGCGAGCAATCCTCA
GTCCTCGCTGTACATGAGTCAGGAACGGCTTTCGGTTGGAGATTGTTGAA
GCAGATTTTCCCCAACACCTCTGAGTGTTGGAAAAAGACGCTCCTCCGGA
TCCATGAGCGGTCCGTTTTCAGTCCGCCTGCGCATCTAAGCGCGAGTTGA
ACGAGTAGGAGGTGCAAGGTTCGTGTCCCCTCGACACAGAGGTTGCAGTG
GATCGACAGTAACGGAAACGGACCGCAAACAGCACTACTCGATTATTTTT
GACAAGTGTGGACAGCAGTAGCCCAAAACATCTAAAACCCCCCGCCCCTC
TGTGGGAGCGGAGCTGATTCGAACGTTTGGGGTCGACGCGCTGTGGCCGC
TCTTTTCAAGGAACGGATGGCCGAACGCTCAGCCGTAAAAGGAAACCACG
CTGAGTTACTTATTTCCGCGTCAAATGTTGCGTCGTTCCGCGTGTGTGCG
CGCGCGCGTGTGTGTGCGTGCGGTTGATTTCGGCAGCTCGCTGGGACTGA
GAAGTCGCGCATCGCAGTGTCGATCCTCTACCCCAAACAATGGACGGTCA
CCAAGACGCCAGGTGCGGGGTTTTGATCGTCGTGTAAGCTTTTGCGTCGC
GAGCGTGCTTTTGCGTCGCGAGCGTGTTTACGCGTTGCTGCTGTTGTATT
TTTAGCGCGCGTGCTCGTAGTTCTTTGTCCCCGTGATCACGTCGCCCGCT
TGCGTTTCCTAGTCGTGGTGTTTTGCTTGTCCTTTGTACGGCCGTGTTTT
GTGTAGTGATTCCTGGCTGTTATGTGCGTGTTGTGGCACTTGATGCGGCG
AACCGGCCGGATGGGTGTGCCGCGTTCGCGCGCACTCCTTCCCTCTACCC
CGACCGGGTGTTGGTCGGCTCATCGTCAGTATTCTGAAGAGCCCCTCGTA
CCGCGTCTCTTCGATTAGGAAAGAGCATCAACATCCAGGACATGAAGTAC
ACAGACCGAGCGTTCTCTCTTGCAAAGCCCCTGCCGAAGGGCGTGAAGAG
TGTGGGTGACATTCCCGTGTCCTTCTTCACGGACGCTCTCTTCAGCTTGG
ATGTGAGTACTCATACATATCTATCTAGACGGGAGACTGGCGTGTTGTAA
TGCTCAATGCGGTGTATAGTAGAGAGGGCAAGAAAGGGGGGGTGGAAGAA
CTAGTAGGAGAGCGAGAGACGGAGGTAAAGGGAAATACGAGACTGGGCGC
AAGGACCCTACGAGAGGGCGAAGAAAGTAAATGAGAGGCGAGTGGAAACA
AGGTTATTTCCAGGTAGAGAAATGGTCAGCTGCTTCGAAACAGGATAGAT
AGCACAGACAGCAACTCGAAAACATGGTAAGTTTACGGTCGGTTTTCGAG
ATTGGAAAGAACGTGAAATAACAGAATTTTTTCCAACGCCAGATAGCAGT
TACGTCTGACGGGATACGATGCGGGTAAGCATGATGTGATGTGATGTTAC
ATGATCAGCATTGCCCAGGCCGACACACCTATCTACTACCTCGTCGCCTC
GGCATGCTCCCGGCCTGGTCGCTGTCCCTCCTGGGGGCTTTGTACCTGTT
TGACTGACCCGACCATTATTTTATGTTTTTCGTCACGAGTCTCCACGCCT
GCTTACAATTACCAGTCCTTGCTTTGGCCGGTTCAAGGGTAGTTTGACGT
CTCATGAGGAGCTGCAGCATAGATACTGGGCGTACATAATAATCGTTTCC
TCATAGCGTGCTGCGACGGCGGCTGCTGCCGCTGCTCCTCTGACGCCACG
TGGCCGCATGGGGTATCTTCAACGCAATCATGTGCAGGGTCCTTATGGAA
CCTTCGGCAAGGTGGACGATTTCAAGATCGTCGGGACCAAGACGGAGTCC
AAGGGGAAACGAGACTACAGGTTGGATGCAACGTTGCTGTCAGTATGGGG
TCTACTCTCGGTGCCTGAGAACTGCTGGCGGCTTTGAAATATCCTTCTCC
CCCTCCTTCCCTGTTGTCCCCCCCCCCCACGTCACGTCCACCCGTCTACC
TTTTCCGCAACGCTCTTCTTTCGCGGCTGCTCTGCCTGCCGCTGCACAGA
TACATTGACCTCAAGTTTTCGGCACCAACTCAGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig7146:5594..8178- >mRNA_L-elsbetiae_contig7146.15965.1 ID=mRNA_L-elsbetiae_contig7146.15965.1|Name=mRNA_L-elsbetiae_contig7146.15965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig7146:5594..8178- (Laminarionema elsbetiae ELsaHSoW15)
GCCTTGGCGGGGACCGCTCGTCCTTCGGCTAGAAACTTGGCGGAGACGTC
GATAGAGGCCTTGGCGGGGACCGCTCGTCCTTCGGCTAGAAACTTGGCGG
AGACGTCGATAGAGCTCGCTGGGACTGAGAAGTCGCGCATCGCAGTGTCG
ATCCTCTACCCCAAACAATGGACGGTCACCAAGACGCCAGCTCGCTGGGA
CTGAGAAGTCGCGCATCGCAGTGTCGATCCTCTACCCCAAACAATGGACG
GTCACCAAGACGCCAGGAAAGAGCATCAACATCCAGGACATGAAGTACAC
AGACCGAGCGTTCTCTCTTGCAAAGCCCCTGCCGAAGGGCGTGAAGAGTG
TGGGTGACATTCCCGTGTCCTTCTTCACGGACGCTCTCTTCAGCTTGGAT
GAAAGAGCATCAACATCCAGGACATGAAGTACACAGACCGAGCGTTCTCT
CTTGCAAAGCCCCTGCCGAAGGGCGTGAAGAGTGTGGGTGACATTCCCGT
GTCCTTCTTCACGGACGCTCTCTTCAGCTTGGATGGTCCTTATGGAACCT
TCGGCAAGGTGGACGATTTCAAGATCGTCGGGACCAAGACGGAGTCCAAG
GGGAAACGAGACTACAGGGTCCTTATGGAACCTTCGGCAAGGTGGACGAT
TTCAAGATCGTCGGGACCAAGACGGAGTCCAAGGGGAAACGAGACTACAG
ATACATTGACCTCAAGTTTTCGGCACCAACTCAGATACATTGACCTCAAG
TTTTCGGCACCAACTCAG back to top
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