mRNA_L-elsbetiae_contig7143.15960.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7143.15960.1
Unique NamemRNA_L-elsbetiae_contig7143.15960.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7143.15960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7143contigL-elsbetiae_contig7143:3692..7396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1127
Cds size1125
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7143.15960.1prot_L-elsbetiae_contig7143.15960.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7143 3694..7396 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.1915107-CDS-L-elsbetiae_contig7143:3693..38071622816793.1915107-CDS-L-elsbetiae_contig7143:3693..3807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7143 3694..3807 -
1691683817.5900214-CDS-L-elsbetiae_contig7143:3693..38071691683817.5900214-CDS-L-elsbetiae_contig7143:3693..3807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7143 3694..3807 -
1622816793.2039173-CDS-L-elsbetiae_contig7143:4328..51291622816793.2039173-CDS-L-elsbetiae_contig7143:4328..5129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7143 4329..5129 -
1691683817.6042874-CDS-L-elsbetiae_contig7143:4328..51291691683817.6042874-CDS-L-elsbetiae_contig7143:4328..5129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7143 4329..5129 -
1622816793.2160845-CDS-L-elsbetiae_contig7143:6243..63751622816793.2160845-CDS-L-elsbetiae_contig7143:6243..6375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7143 6244..6375 -
1691683817.6153023-CDS-L-elsbetiae_contig7143:6243..63751691683817.6153023-CDS-L-elsbetiae_contig7143:6243..6375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7143 6244..6375 -
1622816793.2300193-CDS-L-elsbetiae_contig7143:7318..73961622816793.2300193-CDS-L-elsbetiae_contig7143:7318..7396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7143 7319..7396 -
1691683817.6259325-CDS-L-elsbetiae_contig7143:7318..73961691683817.6259325-CDS-L-elsbetiae_contig7143:7318..7396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7143 7319..7396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7143.15960.1

>prot_L-elsbetiae_contig7143.15960.1 ID=prot_L-elsbetiae_contig7143.15960.1|Name=mRNA_L-elsbetiae_contig7143.15960.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=375bp
VGGDVARGDAEAGVGSAGRSVRRALQEEVTPSPAVVPVTLTIAPVTTTTP
MPVEPPVTAATPIPVEPPVQEETPTTPEPDTTAPPTPGAEAVPETPGPAA
LEAPETPAPVASETAPESPAPVADADDETQVPDGAEEEEETPAPTATATI
GTEEGETAPPTVEGTPAGMPVDGSSPSPSATADPSALPPGVTVSPSVTAE
PSALPPGATLAPGATATLAPGATRAPANAFLSPGATLAPGETLPPGATLA
PVLPTESPANAFLPPGATLAPGATLSPGATLAPVAETSPAPTPSAGTGSP
ETASPTEALSDVDEVVDTSGEVVSTTATVAVASTAAAATVTAVTATSTVA
ATTSTVTSTVSTVASAAATGGSAGG
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mRNA from alignment at L-elsbetiae_contig7143:3692..7396-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7143.15960.1 ID=mRNA_L-elsbetiae_contig7143.15960.1|Name=mRNA_L-elsbetiae_contig7143.15960.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3705bp|location=Sequence derived from alignment at L-elsbetiae_contig7143:3692..7396- (Laminarionema elsbetiae ELsaHSoW15)
GTTGGCGGCGATGTAGCCAGAGGCGATGCGGAAGCTGGAGTGGGCTCCGC
CGGCCGTAGTGTGCGCCGCGCTCTGCAGGTAACTTTGGAGGGGGTTGAGG
TTAGGAGCATGCGATGCTGTCGTGTGTCCTTTTCCGGTTTTATTTCAACC
ATCTCTGACGATTATGCAGAAATGTTATGTTCTGCCAACCTCACTAGTCT
GGGTAAAATCTGAAAGATCTAGGTTGCGCGCGGGTTGGCAGTGTAACCGT
CGGCGGTGCTTTCAATGAAAAATGTTCCATAATTCATGCCTTTTCCGCCA
TAACTTGCGCGAAGAAGAGATCGATGCGAGAGAGGTACATACAGCATGCG
GCACATTTTTGTTGTTGTTGAAAGTGCACACCGAAGCCACGACATTATTT
ACCTCTCCGCTTACATGTATGTACATAGCGCGCGGCGAAGCGATCGATCC
GAGGTGCTAGGATGCTGCATCGATTCTGTTCAGCACAAACTGAAAGCCAC
ACAACTAACTACCTTTCCGCGTATATTTAGCGCGCGCGAAGCGATGGATG
CGAAGAGGTAGGATGCGGCACTCTTTTTTTTTTTGTGAAGTACAAGCCGA
AGCCACGAAGCTACATTTGCGCGTATACAGTAGCGCGCGCTGAGCGATTG
ATGCGAAGAGGTATTTAGGATGCGGCACCGATTTTGTTAAGCACAAATTG
AAAGCCAACACAGTAATTACCTTTCCGCTTATAGCGCGCGCGAAGCAATA
GATGCGAAGAGGTACTTAGGACGCGGCGACCTTTTTAGTGAAGTACAAGC
CGGAAGCCACACACACATCTACCGTCCGCTTATAGCGATTGATGCGAGCG
GTAGAAGCATGTGTTGAGTAAATACCGAAGCCACTAAATCACAAACCAAC
CATTTTTCTGATGGCGTGCTGACTACTGCTGTGGCAACACGGCCCCAGCT
CACACAGAATGGCGGTGGAAATTGGCGGCGGGGTATATGCTGATTTCTGC
TCACTTTTCACTCTCTTGCAGGAAGAGGTAACACCTTCGCCAGCCGTTGT
CCCGGTCACATTGACCATCGCTCCCGTGACAACGACAACACCAATGCCTG
TTGAACCACCAGTGACAGCGGCAACACCAATTCCTGTTGAACCACCAGTA
CAGGTAACACGTGCTGCAACAGTGGTTTGCCGCGGCCCCATTGACCGTCG
TGCCCCCCTTGGCAGCAGCAACACCAATCCCTGTCGAAAGGGCGTCCGGC
CGGGTCGGTCGGTCGGTGGCTGATGTATTTGTGTACATGGGGCAATTTCG
AGCACGATGCGGTGTTCAAAAAAAAAAAGTTGGGTTTGTGTGTTGTGTCG
TGTATAGTACTTCAAGATAAGGTGTTGTTTGTTCCAGGTTCCGCTTCTTG
TCTCGTTTACATTTATTGTGCAAGACCCACCGCAGGACCTGCACACACCA
TCCACACACACGCGTACCACACGCCAGCCACGCCAGCCACACACCCACAC
ACCCACACACACACACCACAACCAGCCACACACCAGCCCCACCTGCGGCG
TGGACCCACCCACGCCCGCACCCCCACCCACACCCACACCCCCACCCACC
CAATCAGCGGACCCCCGCCACCCAGCCACCCACCCGGCCACACAGGCACA
CCACCTTCCCCCCACCACACCGACCACCCACACGACACACACACACACAC
ACACCACACGACCAGCCACACACCAACTACCCACCTCTCCCAGCCGCCCA
CCCCACGGCACCCGACCCCCACCCAACGCCGTGCGTCGCAGATGTGTGTA
TCTGTAGTGTTGTTGTTTCCAGCGAATCCCTCCCTCTCTCCCTCCCTCCC
GGCGTAAGGTAGCCGTCTGGTGCGGAAGGGAAGAGGAGCACGCGTACATG
GGCGGTGCTCGGCGGCCAGGATTGTTGTCTTGTGTTTGGTGTCTGTTTTG
GCGTTTTGCAGTTAGGAACCAACTTTGGTGCCGTCCGTCTGTAGGATAGA
GATGCATGGCAACGGGGGGGGGGGGGCAGCGACTGAAAAACACTCAACCG
CATGCCCCCCCCCGCGCGCGCGCGCCCATCCACTCTTGCCTCACGTTACT
TTACCCTCCCTCGCCGAAAACGAGAGTGTTGTTAGTGTGCGAGACGGTCT
TCTGCTCTATAGCCCCGCACGAGTCTCCGACCCTTGCGCGCCCCGCGCCG
CTCTCGACCCCAGCCGCTAACCCCCGTGCCGTCGACCTTGTCTGCGTTTT
CGTGTTTTCCTCATCAGGAAGAGACACCGACGACCCCGGAACCGGATACG
ACCGCGCCGCCGACCCCAGGCGCCGAAGCGGTCCCCGAGACCCCCGGCCC
GGCGGCCCTCGAGGCCCCCGAAACGCCCGCGCCGGTAGCGTCCGAGACCG
CACCCGAGTCGCCCGCTCCGGTGGCGGACGCCGACGACGAGACCCAGGTG
CCGGACGGGGCGGAGGAGGAGGAGGAGACGCCCGCCCCGACCGCGACCGC
GACCATCGGCACCGAGGAGGGCGAGACGGCTCCGCCGACGGTGGAAGGGA
CCCCCGCCGGGATGCCGGTCGACGGGTCCTCGCCCTCCCCGTCCGCCACG
GCCGACCCGAGCGCGCTCCCCCCAGGAGTCACGGTCTCCCCGTCCGTCAC
GGCGGAGCCGAGCGCGCTGCCCCCGGGCGCCACGCTCGCGCCCGGCGCGA
CGGCGACGCTTGCCCCCGGCGCCACGCGTGCCCCCGCGAACGCTTTCTTG
TCTCCCGGCGCCACCCTCGCCCCCGGCGAGACGCTGCCCCCCGGCGCCAC
GCTGGCCCCGGTCCTCCCCACCGAGAGCCCCGCGAACGCTTTCTTGCCCC
CCGGCGCTACCCTCGCCCCGGGGGCGACGCTTTCCCCCGGCGCCACGCTG
GCGCCCGTGGCCGAGACGTCGCCCGCCCCGACACCGAGCGCCGGCACGGG
GTCTCCCGAGACGGCTTCTCCGACGGAGGCCCTGTCGGACGTCGATGAGG
TGGTGGACACCTCTGGAGAGGTGGTGTCGACCACGGCTACGGTGGCGGTT
GCGTCGACAGCGGCAGCGGTGAGTGGATATGTGTGTGTGTTTCATTAATG
TTGACATGCAAGTGTCAAGTCTATTTACGTCCGGTCTGTGCAAAAAGTCG
TTCCAGAGGGACCTTTTGTTGTAGTGTTTTTGTGCGAAACAGACAAGAGA
GGAAGAGACAAAGAGCGAGAGAAGTGATTCTGCTCAGCTCGATGTTGTTT
GTCTCCAGCATATTGATTGCGCTACATATGCCATGTGTAAAAGCATGGTA
CCTATGTATGTATATACTTCACCGTACACAAATACTTTCGAAGCATATTT
TTTGTTGTTAAGCTAATAGTCTTATCTCGCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCACACCCCCACCACCCCCCCCCGCCCCCCCCCAGCCCCC
CAGACCCCCAACACNNNNNNNNNNTTTTTTGTTTATACTTCACCCCAACA
AAAAACTTTCCCACACTATTTTTTTTTTTTAAGCTAAAACTTTTTTCTCG
CCCCCCCCCCCCCCCCCGCCCCCTCCACGGAAAAAACAGGCCACGGTGAC
GGCCGTGACGGCCACCAGCACGGTAGCAGCAACAACATCGACGGTGACGT
CGACGGTCTCGACGGTCGCCTCCGCGGCGGCGACGGGCGGGTCGGCGGGA
GGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7143:3692..7396-

>mRNA_L-elsbetiae_contig7143.15960.1 ID=mRNA_L-elsbetiae_contig7143.15960.1|Name=mRNA_L-elsbetiae_contig7143.15960.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2250bp|location=Sequence derived from alignment at L-elsbetiae_contig7143:3692..7396- (Laminarionema elsbetiae ELsaHSoW15)
GTTGGCGGCGATGTAGCCAGAGGCGATGCGGAAGCTGGAGTGGGCTCCGC
CGGCCGTAGTGTGCGCCGCGCTCTGCAGGTTGGCGGCGATGTAGCCAGAG
GCGATGCGGAAGCTGGAGTGGGCTCCGCCGGCCGTAGTGTGCGCCGCGCT
CTGCAGGAAGAGGTAACACCTTCGCCAGCCGTTGTCCCGGTCACATTGAC
CATCGCTCCCGTGACAACGACAACACCAATGCCTGTTGAACCACCAGTGA
CAGCGGCAACACCAATTCCTGTTGAACCACCAGTACAGGAAGAGGTAACA
CCTTCGCCAGCCGTTGTCCCGGTCACATTGACCATCGCTCCCGTGACAAC
GACAACACCAATGCCTGTTGAACCACCAGTGACAGCGGCAACACCAATTC
CTGTTGAACCACCAGTACAGGAAGAGACACCGACGACCCCGGAACCGGAT
ACGACCGCGCCGCCGACCCCAGGCGCCGAAGCGGTCCCCGAGACCCCCGG
CCCGGCGGCCCTCGAGGCCCCCGAAACGCCCGCGCCGGTAGCGTCCGAGA
CCGCACCCGAGTCGCCCGCTCCGGTGGCGGACGCCGACGACGAGACCCAG
GTGCCGGACGGGGCGGAGGAGGAGGAGGAGACGCCCGCCCCGACCGCGAC
CGCGACCATCGGCACCGAGGAGGGCGAGACGGCTCCGCCGACGGTGGAAG
GGACCCCCGCCGGGATGCCGGTCGACGGGTCCTCGCCCTCCCCGTCCGCC
ACGGCCGACCCGAGCGCGCTCCCCCCAGGAGTCACGGTCTCCCCGTCCGT
CACGGCGGAGCCGAGCGCGCTGCCCCCGGGCGCCACGCTCGCGCCCGGCG
CGACGGCGACGCTTGCCCCCGGCGCCACGCGTGCCCCCGCGAACGCTTTC
TTGTCTCCCGGCGCCACCCTCGCCCCCGGCGAGACGCTGCCCCCCGGCGC
CACGCTGGCCCCGGTCCTCCCCACCGAGAGCCCCGCGAACGCTTTCTTGC
CCCCCGGCGCTACCCTCGCCCCGGGGGCGACGCTTTCCCCCGGCGCCACG
CTGGCGCCCGTGGCCGAGACGTCGCCCGCCCCGACACCGAGCGCCGGCAC
GGGGTCTCCCGAGACGGCTTCTCCGACGGAGGCCCTGTCGGACGTCGATG
AGGTGGTGGACACCTCTGGAGAGGTGGTGTCGACCACGGCTACGGTGGCG
GTTGCGTCGACAGCGGCAGCGGAAGAGACACCGACGACCCCGGAACCGGA
TACGACCGCGCCGCCGACCCCAGGCGCCGAAGCGGTCCCCGAGACCCCCG
GCCCGGCGGCCCTCGAGGCCCCCGAAACGCCCGCGCCGGTAGCGTCCGAG
ACCGCACCCGAGTCGCCCGCTCCGGTGGCGGACGCCGACGACGAGACCCA
GGTGCCGGACGGGGCGGAGGAGGAGGAGGAGACGCCCGCCCCGACCGCGA
CCGCGACCATCGGCACCGAGGAGGGCGAGACGGCTCCGCCGACGGTGGAA
GGGACCCCCGCCGGGATGCCGGTCGACGGGTCCTCGCCCTCCCCGTCCGC
CACGGCCGACCCGAGCGCGCTCCCCCCAGGAGTCACGGTCTCCCCGTCCG
TCACGGCGGAGCCGAGCGCGCTGCCCCCGGGCGCCACGCTCGCGCCCGGC
GCGACGGCGACGCTTGCCCCCGGCGCCACGCGTGCCCCCGCGAACGCTTT
CTTGTCTCCCGGCGCCACCCTCGCCCCCGGCGAGACGCTGCCCCCCGGCG
CCACGCTGGCCCCGGTCCTCCCCACCGAGAGCCCCGCGAACGCTTTCTTG
CCCCCCGGCGCTACCCTCGCCCCGGGGGCGACGCTTTCCCCCGGCGCCAC
GCTGGCGCCCGTGGCCGAGACGTCGCCCGCCCCGACACCGAGCGCCGGCA
CGGGGTCTCCCGAGACGGCTTCTCCGACGGAGGCCCTGTCGGACGTCGAT
GAGGTGGTGGACACCTCTGGAGAGGTGGTGTCGACCACGGCTACGGTGGC
GGTTGCGTCGACAGCGGCAGCGGCCACGGTGACGGCCGTGACGGCCACCA
GCACGGTAGCAGCAACAACATCGACGGTGACGTCGACGGTCTCGACGGTC
GCCTCCGCGGCGGCGACGGGCGGGTCGGCGGGAGGAGCCACGGTGACGGC
CGTGACGGCCACCAGCACGGTAGCAGCAACAACATCGACGGTGACGTCGA
CGGTCTCGACGGTCGCCTCCGCGGCGGCGACGGGCGGGTCGGCGGGAGGA
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