mRNA_L-elsbetiae_contig7136.15951.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI) HSP 1 Score: 184 bits (467), Expect = 3.370e-51 Identity = 124/306 (40.52%), Postives = 177/306 (57.84%), Query Frame = 2 Query: 2 WVLMEIAVWSAAWAVGIPRTASVVQTVARSSLIFTVLAATWLAYQLKNVHDSTNLSRDIGLVGRVFVVIFVIFAALMLLPNPYPLVFKYANIVFQSISSPPIVYLINIRPVREILRQTREGGRSTVQ-KILAPRHQRAPSNMMDEVERGQSRAGCA-------DEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEGGNGEI---FLDYTRFLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAVVHLE 886 ++LME A+WS AVG+ RT V+ T+ S TV+A + +L V D ++S DI +VG + +++ + A L + + P+ +KY IV ++S PPIV+L NIRPVRE+ R RS ++ +P + + N+ V ++ D++R+ +IM F PL AFGE CR++LC ESF+FLVDV +FK D I + E F + +LA+VN YIK SH E+NI S TKR IM KF YA+L + RK+IF PAE EI +L +NLL+KFL S+ Y VV E Sbjct: 134 YILMEGALWSGVAAVGVSRTGGVLATLELFSGSTTVVAGVLVGGRLNKVDDLLHMSTDIRVVGMLLLLMSCVHAGLHYV-SMSPMEYKYYTIVLMALSHPPIVWLTNIRPVREVERNIPARRRSRKDFQLPSPYRRWSTKNIRVGVAADENNNSLPWNGEVYLDDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFK--DLIADSAAEETEKSFGGFGGYLAVVNDYIKDGSHSEVNIASTTKRSIMQHMKFTAYAALKLEDRKDIFGPAEREIKIVLADNLLNKFLVSDPYTKVVDFE 436
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE) HSP 1 Score: 182 bits (462), Expect = 2.180e-50 Identity = 126/318 (39.62%), Postives = 185/318 (58.18%), Query Frame = 2 Query: 2 WVLMEIAVWSAAWAVGIPRTASVVQTVARSSLIFTVLAATWLAYQLKNVHDSTNLSRDIGLVGRVFVVIFVIFAALMLLPNPYPLVFKYANIVFQSISSPPIVYLINIRPVREILRQT-REGGRSTVQKILAPRHQR-----------APSNMMDEVERGQSRAGCADEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEG-----GNGEIFLD-----YTRFLA----IVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAVV 877 ++L+E+ VW AA G R A V+ +A S T++A L QLK +HD +N+ RDI LVG + ++ +F A+ +L L FKY ++F +IS PPIV+++NIRP++E+L R VQ +LA +R A + + + SR + +R+A IM + PL AFGE C+K+LCSESF+FL+D ++F+ + I+EG NG + +T L +VN YIK + EINIGS+TKRDIM+ K E +ASLD D R IF AE EI ++L++NL+++FLAS +YK V Sbjct: 125 YLLVEMVVWLAAAMQGTKRVAVVMTNLAPLSAFVTLMAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICLPVFTAIRVLWGSI-LAFKYFFVIFITISHPPIVWILNIRPIQEVLHHAPRNSIPKGVQVLLALSSRRRGGITSTIVGEAVTPDVSQNPSRHSRESYVESNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGV--IVEGPVDGDANGSAEEENEAPTHTSGLGDVATMVNEYIKDGAPSEINIGSDTKRDIMELAKVEAFASLDQDARLLIFVQAEREIRRILEDNLMARFLASAQYKRAV 439
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE) HSP 1 Score: 177 bits (448), Expect = 2.080e-48 Identity = 121/305 (39.67%), Postives = 175/305 (57.38%), Query Frame = 2 Query: 2 WVLMEIAVWSAAWAVGIPRTASVVQTVARSSLIFTVLAATWLAYQLKNVHDSTNLSRDIGLVGRVFVVIFVIFAALMLLPNPYPLVFKYANIVFQSISSPPIVYLINIRPVREILRQTREGGRSTVQKIL-APRHQRAPSNMMDEVERGQ-------SRAGCADEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAI--DRILEGGNGEIFLDYTRFLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAVVHLE 886 ++LME A+WS AVG+ RT V+ T+ + TV+A L +L V D ++S DI +VG + +++ + L L + P ++Y I ++ PPIV+LINIRPV E+ R RS L +P +R+ N+ V + + +++R+ +IM F PL AFGE CR++LC ESF+FLVDV +FK + D E + F + +LAIVN YIK SH E+NI S TKR IM + KF YA+L ++RK++F PAE EI +L +NLL+KFL S+ Y VV E Sbjct: 134 YILMEGALWSGVAAVGLSRTVGVLVTLELFTGSTTVVAGVLLGGRLNKVDDLLHMSTDIRVVGTILLLMTCVHKGLPYL-SMSPTEYQYCKITLTALLHPPIVWLINIRPVLEVGRNIPARRRSRKSFHLPSPFRRRSTKNIRVGVAADEDINTLPWNGEAYLNDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIADSAAETSE-KSFGGFGGYLAIVNDYIKDGSHSEVNIASTTKRSIMQYMKFAAYAALQLEERKDLFGPAEREIKIVLADNLLNKFLVSDPYTKVVDFE 436
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: D7G0P5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P5_ECTSI) HSP 1 Score: 159 bits (403), Expect = 3.130e-43 Identity = 111/288 (38.54%), Postives = 165/288 (57.29%), Query Frame = 2 Query: 92 SLIFTVLAATWLAYQLKNVHDSTNLSRDIGLVGRVFVVIFVIFAALMLLPNPYPLVFKYANIVFQSISSPPIVYLINIRPVREILRQT-REGGRSTVQKILAPRHQRAPSN--------MMDEVERGQSRAG---CADEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEG-----GNGEIFLDY---TR------FLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAVV 877 S+ T+ A L QLK +HD +N+ RDI LVG + ++ +F A+ +LP L FKY ++V ++S P IV+++NIRP++E+L R VQ +LA +R + + +V + S+ G D +R+A IM + PL AFGE C+K+ CSE FL+D ++F+ + I+EG NG + TR A+VN YIK + EINIGS+TK DIM+ K E + SLD D R+ IF AE EI ++L++NL+++FLAS +YK V Sbjct: 8 SVFITITAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICVPVFTAIQVLPLS-TLAFKYFSVVSMTLSHPAIVWILNIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRGGSSSAIGGEAVTTDVTQNPSQHGRESYVDSNRLAGIMNYLPLREAFGEFCQKSFCSE---FLLDASEFRGV--IVEGPVEGDANGSAEEENEAPTRTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFTSLDQDARRLIFGKAEREIRRILEDNLMARFLASAQYKRAV 289
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5J8W8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W8_9PHAE) HSP 1 Score: 122 bits (305), Expect = 1.810e-28 Identity = 89/210 (42.38%), Postives = 124/210 (59.05%), Query Frame = 2 Query: 320 NIRPVREILRQTREGG-RSTVQKILA--PRHQRAPSNMM--DEVERG-------QSRAGCADEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEG-----GNGEIFLDY---TRFLA----IVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAVV 877 NIRP++E+L R G VQ +LA R +R ++ + +EV SR D +R+A IM + PL AFGE C+K+LCSESF+FL+D ++F+ + I+EG NG + TR L +VN YIK + EINIGS+TK DIM+ K E +ASLD D RK IF AE EI ++L++NL+++FL S +YK V Sbjct: 129 NIRPIQEVLYHARRNGIPKGVQMLLALSSRARRRSTSTIGGEEVTSDVTQNPSQHSREPYIDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGV--IVEGPVDGDANGSAEEENEAPTRRLGDVATMVNEYIKDGAPSEINIGSDTKHDIMELAKAEAFASLDQDARKLIFVKAEREIKRILEDNLMARFLVSAQYKRAV 336
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5JD29_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD29_9PHAE) HSP 1 Score: 117 bits (294), Expect = 9.690e-28 Identity = 88/216 (40.74%), Postives = 123/216 (56.94%), Query Frame = 2 Query: 320 NIRPVREILRQT-REGGRSTVQKILA--PRHQRAPSNMMDEVERGQ--------SRAGCADEDRIAAIMRFHPLTLAFGEICRKALCSE-----SFEFLVDVTKFKAIDRILEG-------GNGEIFLD---YTRFL----AIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAVV 877 NIRP++E+L R VQ +LA R +R+ + + E SR D +R+A +M + PL AFGE C+K+LCSE SF FL+D +KFK + I+EG G+ E ++ +T L A+VN YIK + EINIGS+TK DIM+ K E +ASLD D RK IF AE EI +L++N++++FLAS +YK V Sbjct: 28 NIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRRSSAAIGGEAVTADVTHNPSRHSRESYVDSNRLAGLMNYLPLREAFGEFCQKSLCSEISRCVSFRFLLDASKFKGV--IVEGPVDGDANGSAEEEIEAPTHTSGLGDVVAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDARKLIFVKAEREIKMILEDNIMARFLASAQYKRAV 241
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5K562_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K562_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 9.260e-20 Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 2 Query: 470 EDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKA-IDRILEGGNGEIFLDYTRFLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIF 790 E R+A IM F PL AFGE CRKALC ESF+FLVDV+KFK+ + +GGN Y F+ IV+ YI+ +S+ E+NI S TK++I+ F YASL K + +F Sbjct: 16 ETRLATIMGFLPLEHAFGEFCRKALCHESFQFLVDVSKFKSSVHAAHQGGNDS----YEEFIVIVDEYIEDNSNFEVNIDSRTKKEILGFGDRSAYASLGTAKSRCLF 119
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.850e-17 Identity = 86/292 (29.45%), Postives = 137/292 (46.92%), Query Frame = 2 Query: 56 RTASVVQTVARSSLIFTVLAATWLAYQLKNVHDSTNLSRDIGLVGRVFVVIFVIFAALML-------LPNPYPLVFKYANIVFQSISSPPIVYLINIRPVREILRQTRE-----GGRSTVQKIL--APRHQRAPSNMMDEVE-----RGQSRAGCADEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEGGNGEIFLDYTRFLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAV 874 R A + V ++ T+ A+ L +L D ++S +I VG FA L L +P V + I+F + V++ NI+PVR++L++ + GG +++ + R ++M+E + +D++ I+RF PL AFGE CRKALCSES FL T K L+ + + + RF IV+ YI+ S E+NI S TK I+ T + L D I + A EI K+L+ENL +KF ++E++K + Sbjct: 201 RVAGAMIAVIAVDMLLTIGASLMLVGKLARTKDMFDMSVEIRSVGG--------FALLALGELMGIVIPMVPATVLNFYLILFLTTRFGTAVWITNIQPVRKVLQRRADHPINAGGIASLFPYVPWTTRSGAVAIDVMNESKVFTKPSSSKFTSVKLDDKLEEILRFPPLLEAFGEFCRKALCSESLMFL---TAGKDFHESLDASDADYDTIFARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKELPLDDAVCILDLAVKEIGKMLQENLYNKFRSTEQFKEI 481
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: D7FYZ5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ5_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 6.590e-15 Identity = 63/215 (29.30%), Postives = 101/215 (46.98%), Query Frame = 2 Query: 251 PLVFKYANIVFQSISSPPIVYLINIRPVREILRQTREGGRSTVQKILAPRHQRAPSNMMDEVERGQSRAGCADED-------RIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEGGNGEIFLDYTRFLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAV 874 P + + +VF + +++ NI+PVRE+LRQ+ + V +R+ S + C R+ I+ PL AF C+KALC ES L +V F+ +E + +F + F+AIVN +IK S E+NI + +M + LD D R +IF AE + ++L +NLL+KF A+E Y+ + Sbjct: 305 PTLMRMHMVVFMVVRFHTALWITNIKPVREVLRQSSDRKDYHVPWFPYVPWRRSASGKVAVGMNETMHVTCTSRPLSTIQLGRLETIINTPPLLEAFDSFCQKALCGESILLLREVAAFRDSIYAVEADDDALFKE---FVAIVNKFIKSGSSYEVNIDCRARTGVMRDVDEARFKELDTDGRADIFTLAETQTSQMLADNLLAKFQATERYQRI 516
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5JDD6_9PHAE (RGS domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD6_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 3.200e-11 Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 2 Query: 458 GCADEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEGGN---GEIFLDYTRFLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLD 766 G E +AAIM F PL AFG RK LCSESF+FLVDV++F ++ G + G+ LD F IV YI +S+ EINI S TK+ + F + YASLD Sbjct: 2 GHLHETPLAAIMEFPPLRQAFGGYFRKPLCSESFQFLVDVSEFSSLVYRTSGCDERGGKDDLD--EFNVIVGEYITDNSNSEINIDSVTKKKLTGFCERSAYASLD 105 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7136.15951.1 >prot_L-elsbetiae_contig7136.15951.1 ID=prot_L-elsbetiae_contig7136.15951.1|Name=mRNA_L-elsbetiae_contig7136.15951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=295bp MEIAVWSAAWAVGIPRTASVVQTVARSSLIFTVLAATWLAYQLKNVHDSTback to top mRNA from alignment at L-elsbetiae_contig7136:4020..8512- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7136.15951.1 ID=mRNA_L-elsbetiae_contig7136.15951.1|Name=mRNA_L-elsbetiae_contig7136.15951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4493bp|location=Sequence derived from alignment at L-elsbetiae_contig7136:4020..8512- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7136:4020..8512- >mRNA_L-elsbetiae_contig7136.15951.1 ID=mRNA_L-elsbetiae_contig7136.15951.1|Name=mRNA_L-elsbetiae_contig7136.15951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1770bp|location=Sequence derived from alignment at L-elsbetiae_contig7136:4020..8512- (Laminarionema elsbetiae ELsaHSoW15)back to top |