mRNA_L-elsbetiae_contig7136.15950.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7136.15950.1
Unique NamemRNA_L-elsbetiae_contig7136.15950.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7136.15950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7136contigL-elsbetiae_contig7136:3409..4086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size678
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7136.15950.1prot_L-elsbetiae_contig7136.15950.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7136 3648..4028 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.2119136-UTR-L-elsbetiae_contig7136:3408..36471622816792.2119136-UTR-L-elsbetiae_contig7136:3408..3647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7136 3409..3647 +
1691683816.8431914-UTR-L-elsbetiae_contig7136:3408..36471691683816.8431914-UTR-L-elsbetiae_contig7136:3408..3647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7136 3409..3647 +
1622816792.2343817-UTR-L-elsbetiae_contig7136:4028..40861622816792.2343817-UTR-L-elsbetiae_contig7136:4028..4086Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7136 4029..4086 +
1691683816.864662-UTR-L-elsbetiae_contig7136:4028..40861691683816.864662-UTR-L-elsbetiae_contig7136:4028..4086Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7136 4029..4086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.22225-CDS-L-elsbetiae_contig7136:3647..40281622816792.22225-CDS-L-elsbetiae_contig7136:3647..4028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 3648..4028 +
1691683816.854421-CDS-L-elsbetiae_contig7136:3647..40281691683816.854421-CDS-L-elsbetiae_contig7136:3647..4028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 3648..4028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7136.15950.1

>prot_L-elsbetiae_contig7136.15950.1 ID=prot_L-elsbetiae_contig7136.15950.1|Name=mRNA_L-elsbetiae_contig7136.15950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MHIHLDYTLLPVVSLARRSRAALPTGRILSNLAMYQIATETFFTEGRQAS
KTNCLRNTYQRYISKSCEHSEQRKITSCETSSLVYYLVVVCFQPEIFSAF
RIGSARNSRKHDPRNRCTCRRQCVDG*
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mRNA from alignment at L-elsbetiae_contig7136:3409..4086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7136.15950.1 ID=mRNA_L-elsbetiae_contig7136.15950.1|Name=mRNA_L-elsbetiae_contig7136.15950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig7136:3409..4086+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAACCGCTCGCTCGTTTCTCGCCTCATAAAACTGAGAGCGTGCTTGCA
TGTGCGTGTGATTTGTGAGAAAAAACTACTTACATATGTGCGATCTACCT
CTCGGCAGCGCTCATTCAACCCAATCCCGTGTAAACAAAGCCCCCCTCCA
CCCAAAGAATGACTAACAAAGCGTAGCCCCGGGGTATTGGGGTTTAAAAT
GGACAAGCAAATATCTCTTCCTCAAAACTCTGTGGTTCGATGCACATACA
TCTAGACTATACATTATTGCCGGTTGTTTCGCTAGCCCGTCGCTCTAGAG
CAGCGCTCCCAACAGGACGAATCCTCTCCAACCTCGCAATGTATCAAATA
GCAACAGAGACCTTTTTCACCGAAGGCAGACAAGCTTCGAAAACAAACTG
CCTCAGAAACACGTACCAACGATATATTTCTAAGAGTTGTGAGCACTCGG
AACAACGTAAAATCACATCTTGCGAAACATCTAGTCTAGTCTACTATTTA
GTGGTGGTGTGTTTTCAGCCTGAAATTTTCAGTGCTTTTAGAATCGGAAG
CGCAAGAAACAGTCGGAAACATGATCCCCGAAACAGGTGCACCTGCCGCA
GGCAATGTGTGGACGGGTGATTGCTGGCCATTTCCCACGCTCCATCCACT
TCCTGAGTAACTCATTCCACCTCCCACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7136:3409..4086+

>mRNA_L-elsbetiae_contig7136.15950.1 ID=mRNA_L-elsbetiae_contig7136.15950.1|Name=mRNA_L-elsbetiae_contig7136.15950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig7136:3409..4086+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACATACATCTAGACTATACATTATTGCCGGTTGTTTCGCTAGCCCG
TCGCTCTAGAGCAGCGCTCCCAACAGGACGAATCCTCTCCAACCTCGCAA
TGTATCAAATAGCAACAGAGACCTTTTTCACCGAAGGCAGACAAGCTTCG
AAAACAAACTGCCTCAGAAACACGTACCAACGATATATTTCTAAGAGTTG
TGAGCACTCGGAACAACGTAAAATCACATCTTGCGAAACATCTAGTCTAG
TCTACTATTTAGTGGTGGTGTGTTTTCAGCCTGAAATTTTCAGTGCTTTT
AGAATCGGAAGCGCAAGAAACAGTCGGAAACATGATCCCCGAAACAGGTG
CACCTGCCGCAGGCAATGTGTGGACGGGTGAATGCACATACATCTAGACT
ATACATTATTGCCGGTTGTTTCGCTAGCCCGTCGCTCTAGAGCAGCGCTC
CCAACAGGACGAATCCTCTCCAACCTCGCAATGTATCAAATAGCAACAGA
GACCTTTTTCACCGAAGGCAGACAAGCTTCGAAAACAAACTGCCTCAGAA
ACACGTACCAACGATATATTTCTAAGAGTTGTGAGCACTCGGAACAACGT
AAAATCACATCTTGCGAAACATCTAGTCTAGTCTACTATTTAGTGGTGGT
GTGTTTTCAGCCTGAAATTTTCAGTGCTTTTAGAATCGGAAGCGCAAGAA
ACAGTCGGAAACATGATCCCCGAAACAGGTGCACCTGCCGCAGGCAATGT
GTGGACGGGTGA
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