mRNA_L-elsbetiae_contig7132.15946.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7132.15946.1
Unique NamemRNA_L-elsbetiae_contig7132.15946.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7132.15946.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 3.270e-26
Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:   73 KKTAAARITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNTFLSITGVFSFDLGWTLSAACL 276
            KKTAAARI  +LA LPLSKLKIVVVVWQISNAFAEVT VPFPPVY  FLSI G+FSFDLGW +SAACL
Sbjct:  941 KKTAAARIGEMLARLPLSKLKIVVVVWQISNAFAEVTKVPFPPVYEKFLSIIGIFSFDLGWMISAACL 1008
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BLAST of mRNA_L-elsbetiae_contig7132.15946.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.500e-24
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   82 AAARITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNTFLSITGVFSFDLGWTLSAACL 276
            AAARI  +LA LPLSKLKIV+VVWQISNAFAE+T VPFPPVY  FLSI G+FSFDLGW +SAACL
Sbjct: 1403 AAARIGEMLARLPLSKLKIVIVVWQISNAFAEITKVPFPPVYEKFLSIIGIFSFDLGWMISAACL 1467
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BLAST of mRNA_L-elsbetiae_contig7132.15946.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 6.510e-24
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:   85 AARITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNTFLSITGVFSFDLGWTLSAACL 276
            AARI  +LA LPLSKLKIVVVVWQISNAFAE+T VPFPPVY  FLSI G+FSFDLGW +SAACL
Sbjct: 1294 AARIGEMLARLPLSKLKIVVVVWQISNAFAEITKVPFPPVYEKFLSIIGIFSFDLGWMISAACL 1357
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BLAST of mRNA_L-elsbetiae_contig7132.15946.1 vs. uniprot
Match: D7G5M2_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M2_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 8.690e-24
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:   85 AARITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNTFLSITGVFSFDLGWTLSAACL 276
            AAR+  +LA LPLSKLKIVVVVWQISNAFAE+T VPFPPVY  FLSI G+FSFDLGW +SAACL
Sbjct:  677 AARVGEMLARLPLSKLKIVVVVWQISNAFAEITKVPFPPVYEKFLSIIGIFSFDLGWMMSAACL 740
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BLAST of mRNA_L-elsbetiae_contig7132.15946.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 9.440e-22
Identity = 45/62 (72.58%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:   91 RITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNTFLSITGVFSFDLGWTLSAACL 276
            R+  +LAALPLSKLKIV+VVWQI++AFA++T  PFPP+Y  FLSI G+FSFDLGW LSAACL
Sbjct: 1251 RVANLLAALPLSKLKIVIVVWQITSAFADITKAPFPPIYEKFLSIIGIFSFDLGWILSAACL 1312
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BLAST of mRNA_L-elsbetiae_contig7132.15946.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.250e-13
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   91 RITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNTFLSITGVFSFDLGWTLSAACL 276
            R+  +LAALPLSKLKIV+          ++T  PFPP+Y  FLSI G+FSFDLGW LSAACL
Sbjct: 1068 RVANLLAALPLSKLKIVI----------DITKAPFPPIYEKFLSIIGIFSFDLGWILSAACL 1119
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BLAST of mRNA_L-elsbetiae_contig7132.15946.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.480e-12
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   91 RITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNTFLSITGVFSFDLGWTLSAACL 276
            R+  +L ALPLSKLKIV+          ++T  PFPP+Y  FLSI G+FSFDLGW LSAACL
Sbjct: 1028 RVANLLTALPLSKLKIVI----------DITKAPFPPIYEKFLSIIGIFSFDLGWILSAACL 1079
[Close]
BLAST of mRNA_L-elsbetiae_contig7132.15946.1 vs. uniprot
Match: A0A6H5JI42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI42_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.280e-11
Identity = 40/66 (60.61%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:   79 TAAARITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNTFLSITGVFSFDLGWTLSAACL 276
            TAA RI  +LA LPLSK            AFAE+T VPFPPVY  FLSI G FSF LGW +SAACL
Sbjct:  191 TAAVRIGEMLARLPLSKD-------CRRCAFAEITKVPFPPVYEKFLSIIGTFSFGLGWVISAACL 249
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BLAST of mRNA_L-elsbetiae_contig7132.15946.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.540e-10
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:  109 AALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNTFLSITGVFSFDLGWTLSAACL 276
            A LP+ KLKI+VVVWQI + F  +T V FPP Y  FLS   + SFDLG  LSA+C+
Sbjct: 1104 ARLPMDKLKILVVVWQILSVFPSITAVDFPPAYARFLSWIDMLSFDLGHVLSASCV 1159
[Close]
BLAST of mRNA_L-elsbetiae_contig7132.15946.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.250e-8
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  109 AALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNTFLSITGVFSFDLGWTLSAACL 276
            A LP+ K+KI+VVVWQI + F  +T V FPP Y  FLS   + SFDL   LSA+C+
Sbjct: 1111 ARLPMDKIKILVVVWQILSVFPSITAVDFPPAYARFLSWINMLSFDLEHVLSASCV 1166
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7132.15946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G0A8_ECTSI3.270e-2683.82Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JRA9_9PHAE3.500e-2480.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0B0_ECTSI6.510e-2481.25Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G5M2_ECTSI8.690e-2479.69Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5K4A5_9PHAE9.440e-2272.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY9_ECTSI4.250e-1359.68Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G119_ECTSI1.480e-1258.06Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5JI42_9PHAE1.280e-1160.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH4_ECTSI7.540e-1057.14Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH3_ECTSI1.250e-853.57Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7132contigL-elsbetiae_contig7132:4192..5164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D8LHQ8
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size277
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7132.15946.1prot_L-elsbetiae_contig7132.15946.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7132 4192..5164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.7935429-CDS-L-elsbetiae_contig7132:4191..42991622816791.7935429-CDS-L-elsbetiae_contig7132:4191..4299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7132 4192..4299 -
1691683816.4926085-CDS-L-elsbetiae_contig7132:4191..42991691683816.4926085-CDS-L-elsbetiae_contig7132:4191..4299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7132 4192..4299 -
1622816791.80666-CDS-L-elsbetiae_contig7132:4624..46471622816791.80666-CDS-L-elsbetiae_contig7132:4624..4647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7132 4625..4647 -
1691683816.506662-CDS-L-elsbetiae_contig7132:4624..46471691683816.506662-CDS-L-elsbetiae_contig7132:4624..4647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7132 4625..4647 -
1622816791.8191783-CDS-L-elsbetiae_contig7132:5019..51641622816791.8191783-CDS-L-elsbetiae_contig7132:5019..5164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7132 5020..5164 -
1691683816.5173187-CDS-L-elsbetiae_contig7132:5019..51641691683816.5173187-CDS-L-elsbetiae_contig7132:5019..5164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7132 5020..5164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7132.15946.1

>prot_L-elsbetiae_contig7132.15946.1 ID=prot_L-elsbetiae_contig7132.15946.1|Name=mRNA_L-elsbetiae_contig7132.15946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MGFFAAGRKISSSPDQESASQKSGKKTAAARITAVLAALPLSKLKIVVVV
WQISNAFAEVTNVPFPPVYNTFLSITGVFSFDLGWTLSAACL
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mRNA from alignment at L-elsbetiae_contig7132:4192..5164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7132.15946.1 ID=mRNA_L-elsbetiae_contig7132.15946.1|Name=mRNA_L-elsbetiae_contig7132.15946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=973bp|location=Sequence derived from alignment at L-elsbetiae_contig7132:4192..5164- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATTTTTCGCTGCCGGTAGAAAGATCTCGTCTTCGCCCGACCAGGA
GTCGGCCAGCCAGAAGAGCGGCAAGAAAACGGCCGCTGCCAGGATCACGG
CCGTGTTGGCGGCGCTCCCACTTTCCAAGCTCAAAATCGTCGTAGGTGAG
AAGTGAACTAACTCCTCGCTCTCTGTTTTCGCTCAAATACTATTGAGAAG
ATCTTCCTTGCCGAAACGTTTCTGCTGTCCATACAAGCGTTTTTGCGGGC
GAGCGGCGTAGCCTCAGTCGCCCAGAAAGATTTTATCGCGAAGGAGAAAG
GAGGAAAGAGGCTTGTGCCATCTTCTCGTCAACACCCCAACTGCTGGTAT
TCCGACGTGTTTCTCTGTCTGCGTTTCTCTCAGTGTCACTTTGTCAAATT
AATCTTCCCCGTTCTAACCTATTCATTCATGCTTGTTCCATCTCTAATGC
TGTCCCCCCGCCCAATCGTCACCTTTTGTTCCCATTCCATTTGTCCCACA
TCCCTGCGGGAACACAGTGGTGTGGCAAATCTCAAACGCGGTGAGCAAAT
AGACGCGTCGGTTTAGAAACAGAGTAGGACGTGACGTAATACGAAGCATA
GAAGTATATGTAGAAACCGTGTACCACAAACAAAATGGCACATGTTGACT
GCCTGTAATGACATACCAGTACATACGTGAAAAGCCGCTTTCAGTAGTAC
ATGCGGACTAAAATGGCCCAACACACCGTGACGCGCTATACGGGATGGAA
GCTCGTTCCACGGAACACACTGCGACTTTTGTTTCTCCCGTGACCGCGAC
TGTTTGACGCATCGTGCCTTCTCCCGCCGTGTCTCGAAATCTCCAATTTG
ATTCACGCCTCGCAGTTCGCAGAGGTCACCAACGTTCCTTTCCCCCCGGT
GTACAACACGTTCCTGTCCATCACCGGGGTGTTTTCCTTTGACCTGGGGT
GGACGCTGTCGGCAGCTTGCCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7132:4192..5164-

>mRNA_L-elsbetiae_contig7132.15946.1 ID=mRNA_L-elsbetiae_contig7132.15946.1|Name=mRNA_L-elsbetiae_contig7132.15946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig7132:4192..5164- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATTTTTCGCTGCCGGTAGAAAGATCTCGTCTTCGCCCGACCAGGA
GTCGGCCAGCCAGAAGAGCGGCAAGAAAACGGCCGCTGCCAGGATCACGG
CCGTGTTGGCGGCGCTCCCACTTTCCAAGCTCAAAATCGTCGTAGATGGG
ATTTTTCGCTGCCGGTAGAAAGATCTCGTCTTCGCCCGACCAGGAGTCGG
CCAGCCAGAAGAGCGGCAAGAAAACGGCCGCTGCCAGGATCACGGCCGTG
TTGGCGGCGCTCCCACTTTCCAAGCTCAAAATCGTCGTAGTGGTGTGGCA
AATCTCAAACGCGTGGTGTGGCAAATCTCAAACGCGTTCGCAGAGGTCAC
CAACGTTCCTTTCCCCCCGGTGTACAACACGTTCCTGTCCATCACCGGGG
TGTTTTCCTTTGACCTGGGGTGGACGCTGTCGGCAGCTTGCCTCTTCGCA
GAGGTCACCAACGTTCCTTTCCCCCCGGTGTACAACACGTTCCTGTCCAT
CACCGGGGTGTTTTCCTTTGACCTGGGGTGGACGCTGTCGGCAGCTTGCC
TC
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