mRNA_L-elsbetiae_contig713.15940.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig713.15940.1
Unique NamemRNA_L-elsbetiae_contig713.15940.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig713.15940.1 vs. uniprot
Match: A0A6H5JTS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS8_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.210e-18
Identity = 72/153 (47.06%), Postives = 89/153 (58.17%), Query Frame = 1 
Query:  115 CLVALALSSPVAP-QCSG---LATAAVPITDCAGLEALPASIVEDLILSFDGVEAIVCDKLLTLTVGGGSELSVRL-------GAGGXXXXXXXXXXXXXSGSGLRLHGVRVVVEKGAKLTVGMAAQ-TDWGQG----GSALRTLTLEGAAQQ 525
            C++ALA+S+   P QC+     A   VPI+DCAGLEALP+ I +DL LSFD V AIVC+KL+TLTVGGG EL++ +       G GG             SG  LRL  VRV V+ GA L+VG+A   +  G G    G     LTLEG A Q
Sbjct:   10 CVLALAISTGAQPPQCTRPRRRAAGTVPISDCAGLEALPSLITQDLHLSFD-VGAIVCEKLVTLTVGGGIELAIHVSPGSTSEGLGGGEGEDEGCRDPPVSG--LRLRNVRVGVKSGAMLSVGVAGDISSDGMGYAGPGEGTSALTLEGVAPQ 159
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig713.15940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTS8_9PHAE5.210e-1847.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig713contigL-elsbetiae_contig713:8749..13227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size527
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.211802-CDS-L-elsbetiae_contig713:8749..89921622816791.211802-CDS-L-elsbetiae_contig713:8749..8992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig713 8750..8992 -
1691683816.034676-CDS-L-elsbetiae_contig713:8749..89921691683816.034676-CDS-L-elsbetiae_contig713:8749..8992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig713 8750..8992 -
1622816791.2220523-CDS-L-elsbetiae_contig713:12945..132271622816791.2220523-CDS-L-elsbetiae_contig713:12945..13227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig713 12946..13227 -
1691683816.0455256-CDS-L-elsbetiae_contig713:12945..132271691683816.0455256-CDS-L-elsbetiae_contig713:12945..13227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig713 12946..13227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig713.15940.1prot_L-elsbetiae_contig713.15940.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig713 8750..13227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig713.15940.1

>prot_L-elsbetiae_contig713.15940.1 ID=prot_L-elsbetiae_contig713.15940.1|Name=mRNA_L-elsbetiae_contig713.15940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
TYSCLAAWLPPPSGGGAPKNQQQRRKERHMWRCRRHRVCLVALALSSPVA
PQCSGLATAAVPITDCAGLEALPASIVEDLILSFDGVEAIVCDKLLTLTV
GGGSELSVRLGAGGGGSEDVVNANAGNSGSGLRLHGVRVVVEKGAKLTVG
MAAQTDWGQGGSALRTLTLEGAAQQ
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mRNA from alignment at L-elsbetiae_contig713:8749..13227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig713.15940.1 ID=mRNA_L-elsbetiae_contig713.15940.1|Name=mRNA_L-elsbetiae_contig713.15940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4479bp|location=Sequence derived from alignment at L-elsbetiae_contig713:8749..13227- (Laminarionema elsbetiae ELsaHSoW15)
ACATATTCTTGCTTGGCTGCCTGGCTGCCGCCTCCCAGCGGAGGAGGGGC
TCCCAAAAACCAGCAACAGCGTAGGAAGGAACGACACATGTGGCGATGTC
GTCGACATCGAGTGTGTCTCGTAGCCTTGGCTCTCTCTTCCCCCGTGGCT
CCGCAATGCTCCGGGCTAGCAACCGCAGCGGTCCCGATTACAGACTGTGC
AGGGCTGGAGGCGCTTCCGGCATCCATCGTGGAGGATTTAATCCTGTCGT
TTGACGGCGTCGAAGCCATCGTGTGTGACAAGGTGCGGTGTGGGAGTGCC
GCCTCTGTTTGTTCTCCTCTCTCCTCTGCTGTCTGACAACACCCCACCCT
TTAGTGCAACACCCCCACCCCCCCCCCTTGACGTGATGATACATCTGCAG
ACAGCAGCAGTACATACACATCTATGCGGCACGTTGTCCTATCGGAATGA
TGTAGCACGTTGCTTGACTATTGCATGCAAAATAACTGATGTATTATTAC
AAGAGAACGAAACACCACGCTCGAGATGCAAACCCAAACGGGGTAACTTC
AGTGTGCACGTGTGTGTATCTCCGCACGAGCACCTCAGCGGCGTTTGTCG
GTGTCCGTCACAGCCAGCCCTGTTGCATGTGCGCATGTACATGCATCCTT
CTCCTCAGTCGTAGGCCGCAGCCCATGCACGCATGCGTGGAATGTGTTGA
ATAGGCTGTACATCCGTCAGTACATAGAGTGTGCCAATCAGCGGCTGGCT
GGTGGTCCAATAGTCACTGCTGTTCAAGCACGAGGGGTACAGGCACGCGG
TCCGAGTTACACTCCCACTGGAGCAGAGCTACAGGTTTTTTCGCCCGATC
TACTTCGTGGTGGGAGGGGTGAACGAGTGCCGAGCGATGCCATGCCTTCT
CGAGGAGATCTCGGCGAGCAGTGTTATTTGGATTAAATTTTAAGGAGGCA
CTTGTTGCGCTCCTTTACTTGAGTTCTCGCCGCAGAGTGCCGTGTTTGTG
GTGGGGAAAGAACAGACCTGTAGCTCCTGTACTTCTCGAGGGTGTAGGAA
AAAGAACGAAGCGAATCGACGCTCTAGCCGCGGCGTGGGAATGATTTACA
CCGATCACAAGTTCGTCGGGAACTCGCAGACGAAAGGCACGCGCATTAAT
TAAAGACCCCCCCACCAAAAGCCCCCGCTCGCTCATGGCCACGCTGACAC
CACTGCGCCATCCCCAGGAGCTCACACAACCCATCCCAGACCAAAAAAAC
TAGAGGGGGTGCGATATGCTGCTCATAGCTAGTGCCGGTGCAGATTTTAA
ACTCAGAATCGCTCTGTGAGTGTCGAATCAGAGCTCTGCCTTCCCGCACA
CGTTGGTGCCCTCGGCCAGGCCAGCAGCAGCTGACGGCAGCAGCTCGTCT
AATTGCAGCGCAACGAGTTATCTCATTTCAGCGGGTGCTCTGCACACCTT
AGACCCTCCTCTTGCTAACGTGCGCGGTCTTGCGATGGATCTCTTCAGGG
ACCATAAAGCTGCGTTTTGTACAGGAATCGTGCTCGTCTGTCTCGCAGCT
GGCTCTCTTTTTTTTACTCTCCCTCTCTCTTCCCTATCATTTTTTTGCGA
TGGCACCTCTAAATGCAGCGCAAGAGCTACCACCTAGATTTTTGGCCCGC
TGTATAGTCACACATCTCTACTACACAGCCTCAAAGTTTCGTTTTGGATC
ACTTCCTGCAACCTGAGATATCGGCTTTTTGGTGCGTGGGGTATACTGAG
GCCCTGTGCCTTTTGGCCTTGACGGAAGGCGCCTTCTTAAAAATCTCCCG
CACATGCGCCCCCTTGAGTTTTAGTTCAAATAACACTGCGAGAGGTCTTT
AGAGGAGGTGAGGGGATCCGCAGACCAGATATTAGGATCCAGGGGCTCAG
TGACGAGCACGATTTGATTGATTTCTTGAATGCGCATTTTGTTGGGTATG
CGGAAACTGACTGGACGGGCGCACCCAAAAGCACCAATTTCCAGTTCGGC
TCTCAGCGTCCCGCTGCGATACCCCTCGACCCACTCACTCCAACACAGCA
GTTTGATTTCCTCTTCAGAGAGACGGTCCGCTCCTAATTTATACGTAGCT
AGCTGTGTTGGAGGCGGAAAAATTACTCTCCAAAGGTGAAAAAATGTGTT
TTTGCCGAGGACTGTCACAGATACCTCCAACTGGAAGTTAGGTGCGCACC
ATAATATCGAAAGCGTGGCTTGTACAAAACTCGCAGGAGCTATCTGCTGC
TGCTACCCAGGACATGCGGCGGCCCCTACACACCATATCAGTATTGTAGG
CCCTCCCAGCACCCTCCGCTGTTCTTGCCTGTGAGGGACGAGCTACATAT
CTGATCTGCTGAACACCAAACTTTCAAGTGGTGTCTGTGACAGTCGAATA
CCATTTTTTCACCTTTGGACAGCAGATTTTCCGCCTCCAAGCCAGCTACA
AATTTAGGAGCGGACCGTCTCTCCGTAGACAAAACAAACTGCTGCGTTGG
AGTGGGTCCAGGGGTATCGCAGCGGGACGCTGAGAGCTGAACTGGAGTGT
GGTGCTTCTGGGCGGACCCGTGCTATTCAGTTTTCAGCATACCGAAGAAA
ATGTGCATTCAAGAATCAACCAAATCGTGCTCGTCACCGAGCCCCTGGAT
CCACAGATCCAGTCTGTAGATCCCCTCACCGTCCCCTTAACCCTTTGGAG
TGTGATTTATTGATCACAAAAGTTGAGTGCTGAAAAGCTTTTTTCCTGCG
GATCTGGGCTGGTCGGCACATCGGGGTGATAATATGAACCCCCTGAGATG
GCCACGCACGCAGCTGTGCAGCAGCAGTGGAGGCTACACGCTGCATGCAT
TAGATAGGTTTCGTCTCAACAATGAATGCCTGCTGCTGCCGCCTTCGCTG
CTGCTGCTGCTGCTGCTGGGTTGTTTGGTTTATTGCTACATAAATAGCTA
TACTTGATGAACTTGCGAAAATCTGTGGTGCGGTCTCTCTCCTCTCACAG
TGTGTGTGTGTGTGTGTGTGTGTGCGGACCACACGCGGACCTAAAAAAAT
GTCCACATTCCCGGGCTACTCGGCCTGCGGCAGGTCCAGGAGCCTAGTCC
CAGAGGGGTAAACTTAAGCAGGGAATAATTACGATTTTTAGGAAATTCCG
CTCAACTAAACACTCCGCAACTTTCAGATGGGGAGACACACGAGACCGTG
GTATGGTACACATGAACATACTCCTATGTGTGAAGAGCCTTCGGCGTGGC
ATCTTTTTTTTCTAGCTTTCTTTTTTATGTTGTATCTTCCGAGTGGTATG
CACCCTACCTTCTGTTTTGTTTTAGTGCCAGTGAGAAGACGCAAGACGCC
CCCGGGATTCAGTTTAGTGTCGCCTGGGGCGTATGTACCATTGTGTTGTT
TTACTTTCACAGTAGCGGCGTCGAGTGTGCTCTGTTTTTTTGTGACCACC
GACGGGCGGCCGGCCGAGCCCCCATGGGTGTTTTTGGACTACTAGATACG
CTAATGTGAGAAACAACAACAACATAGCATGTGCTTCCCCTCTCTCCAGA
GCAGCGTAGTCCTGTCTCGAAATCGCCCCAGGCCTTGCAGAGGTATGTAT
GTACCTCCGGTGCGTGTTTCGTGCCATCGTCTAGCGGCATTTATCACGAC
CAGAAAAAATACGGGTACAGTAGCATGCATATCTACCCTAAGGTGAAGAA
GATTCCGTGCATTTTACTGCTGGGAGGGTTGGAGAAAATTGCGCAGGTGT
ACACCCTATGGTACATACTATATAGCCAAACGAAATTCTCGTGCCCAGCA
TTGATCGTTTCGGCGCCAGTGCGCCTTTTGCTATTCTTCGAGCGTGCATA
TCATACACAAGGTATTGCTGTACCGGCAGCGACACAATCAACGTACTTTC
ACTATTAGCCAGCCCGGCAGACTACCGTAATACCCCCCTTGAGAATGCCC
CGGGGTGTAACTGCTTGTCAAAGCCGATTTTTTCCGCGATGGGTGGGTTG
CTTTTGTCGAGCGATGTGCCCTTGGAAGAACCTCGTCAAGATGGTCCAAA
TTTGCAACTTTTGTTAATCGTACCCTCTCGGCTGTGGAGCAAATCGGCTC
TGGAAAATGTTTACACCCCGGGGCGTTCTCAAGGGATATTACGGTATTTA
TTAGACTAATCCAACGTGTTTTTTTTTTTTTTACTCTGTTCGTCGTTTTG
GACGTTGTTGGTGCCACGACCGCGACACTACAAAGCTGCTCACATTGACG
GTCGGGGGCGGCAGCGAGCTGTCAGTCCGCCTAGGCGCCGGCGGGGGGGG
CAGCGAGGATGTTGTCAACGCGAATGCTGGCAATTCCGGGTCGGGGTTGC
GGCTGCACGGCGTGCGAGTCGTTGTCGAGAAAGGGGCAAAGCTGACCGTC
GGGATGGCCGCGCAGACAGATTGGGGCCAGGGGGGCAGTGCTTTGAGAAC
GCTAACGCTGGAGGGCGCGGCGCAGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig713:8749..13227-

>mRNA_L-elsbetiae_contig713.15940.1 ID=mRNA_L-elsbetiae_contig713.15940.1|Name=mRNA_L-elsbetiae_contig713.15940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig713:8749..13227- (Laminarionema elsbetiae ELsaHSoW15)
ACATATTCTTGCTTGGCTGCCTGGCTGCCGCCTCCCAGCGGAGGAGGGGC
TCCCAAAAACCAGCAACAGCGTAGGAAGGAACGACACATGTGGCGATGTC
GTCGACATCGAGTGTGTCTCGTAGCCTTGGCTCTCTCTTCCCCCGTGGCT
CCGCAATGCTCCGGGCTAGCAACCGCAGCGGTCCCGATTACAGACTGTGC
AGGGCTGGAGGCGCTTCCGGCATCCATCGTGGAGGATTTAATCCTGTCGT
TTGACGGCGTCGAAGCCATCGTGTGTGACAAGACATATTCTTGCTTGGCT
GCCTGGCTGCCGCCTCCCAGCGGAGGAGGGGCTCCCAAAAACCAGCAACA
GCGTAGGAAGGAACGACACATGTGGCGATGTCGTCGACATCGAGTGTGTC
TCGTAGCCTTGGCTCTCTCTTCCCCCGTGGCTCCGCAATGCTCCGGGCTA
GCAACCGCAGCGGTCCCGATTACAGACTGTGCAGGGCTGGAGGCGCTTCC
GGCATCCATCGTGGAGGATTTAATCCTGTCGTTTGACGGCGTCGAAGCCA
TCGTGTGTGACAAGCTGCTCACATTGACGGTCGGGGGCGGCAGCGAGCTG
TCAGTCCGCCTAGGCGCCGGCGGGGGGGGCAGCGAGGATGTTGTCAACGC
GAATGCTGGCAATTCCGGGTCGGGGTTGCGGCTGCACGGCGTGCGAGTCG
TTGTCGAGAAAGGGGCAAAGCTGACCGTCGGGATGGCCGCGCAGACAGAT
TGGGGCCAGGGGGGCAGTGCTTTGAGAACGCTAACGCTGGAGGGCGCGGC
GCAGCAGCTGCTCACATTGACGGTCGGGGGCGGCAGCGAGCTGTCAGTCC
GCCTAGGCGCCGGCGGGGGGGGCAGCGAGGATGTTGTCAACGCGAATGCT
GGCAATTCCGGGTCGGGGTTGCGGCTGCACGGCGTGCGAGTCGTTGTCGA
GAAAGGGGCAAAGCTGACCGTCGGGATGGCCGCGCAGACAGATTGGGGCC
AGGGGGGCAGTGCTTTGAGAACGCTAACGCTGGAGGGCGCGGCGCAGCAG
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