mRNA_L-elsbetiae_contig713.15939.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig713.15939.1
Unique NamemRNA_L-elsbetiae_contig713.15939.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig713.15939.1 vs. uniprot
Match: A0A6H5JTS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS8_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 6.840e-32
Identity = 76/155 (49.03%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:    1 EVKQGGEAVYLVPVNFAANSVARGYSGGALHVDGKVTFAHAACFAGNRAAEAAPXXXXXXXXXXXXXXXXXXXXXPFSVTTPSPVPPLPPVPSSRGRRNSPCGGAVSVGISGRIHFSEFASFEDNYSAGRGGALCNRGLAEFFRRSFFDDNQAAG 465
            EV++GG AV+LVPV+F  NSV  GYSGGA H DG+VTF +AA F GNRA                                            SRG+    CGG VSVG +GR+ FSE ASFE+N SA RGGALCNRG A+FFRRSFF+ NQA+G
Sbjct:  167 EVEEGGAAVFLVPVHFEGNSVQNGYSGGAFHTDGEVTFENAAHFVGNRALGQG----------------------------------------SRGQEAHSCGGGVSVGGTGRVEFSELASFEEN-SAWRGGALCNRGWAKFFRRSFFNGNQASG 280
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BLAST of mRNA_L-elsbetiae_contig713.15939.1 vs. uniprot
Match: D7G5R2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R2_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.430e-29
Identity = 74/155 (47.74%), Postives = 88/155 (56.77%), Query Frame = 1 
Query:    1 EVKQGGEAVYLVPVNFAANSVARGYSGGALHVDGKVTFAHAACFAGNRAAEAAPXXXXXXXXXXXXXXXXXXXXXPFSVTTPSPVPPLPPVPSSRGRRNSPCGGAVSVGISGRIHFSEFASFEDNYSAGRGGALCNRGLAEFFRRSFFDDNQAAG 465
            EV++GG AV+LVPV+F  NSV  GYSGGA H DG+VTF +AA F GNRA                                            SRG+    CGG VSVG +GR+ FSE ASFE+N SA  GGALCNRG A+FFRRSFF+ N+A+G
Sbjct:  116 EVEEGGAAVFLVPVHFEGNSVQNGYSGGAFHADGEVTFENAAHFVGNRALGQG----------------------------------------SRGQEAHSCGGGVSVGGTGRVEFSELASFEEN-SAWTGGALCNRGWAKFFRRSFFNGNRASG 229
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig713.15939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTS8_9PHAE6.840e-3249.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R2_ECTSI1.430e-2947.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig713contigL-elsbetiae_contig713:5868..8159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size502
Cds size501
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig713.15939.1prot_L-elsbetiae_contig713.15939.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig713 5869..8159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.1488645-CDS-L-elsbetiae_contig713:5868..59031622816791.1488645-CDS-L-elsbetiae_contig713:5868..5903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig713 5869..5903 -
1691683816.002884-CDS-L-elsbetiae_contig713:5868..59031691683816.002884-CDS-L-elsbetiae_contig713:5868..5903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig713 5869..5903 -
1622816791.163229-CDS-L-elsbetiae_contig713:7256..76171622816791.163229-CDS-L-elsbetiae_contig713:7256..7617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig713 7257..7617 -
1691683816.013915-CDS-L-elsbetiae_contig713:7256..76171691683816.013915-CDS-L-elsbetiae_contig713:7256..7617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig713 7257..7617 -
1622816791.1812708-CDS-L-elsbetiae_contig713:8054..81591622816791.1812708-CDS-L-elsbetiae_contig713:8054..8159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig713 8055..8159 -
1691683816.0241735-CDS-L-elsbetiae_contig713:8054..81591691683816.0241735-CDS-L-elsbetiae_contig713:8054..8159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig713 8055..8159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig713.15939.1

>prot_L-elsbetiae_contig713.15939.1 ID=prot_L-elsbetiae_contig713.15939.1|Name=mRNA_L-elsbetiae_contig713.15939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
EVKQGGEAVYLVPVNFAANSVARGYSGGALHVDGKVTFAHAACFAGNRAA
EAAPAPAPAPAFGHGGDAPASSSVSPFSVTTPSPVPPLPPVPSSRGRRNS
PCGGAVSVGISGRIHFSEFASFEDNYSAGRGGALCNRGLAEFFRRSFFDD
NQAAGVHRDAPALLQSG
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mRNA from alignment at L-elsbetiae_contig713:5868..8159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig713.15939.1 ID=mRNA_L-elsbetiae_contig713.15939.1|Name=mRNA_L-elsbetiae_contig713.15939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2292bp|location=Sequence derived from alignment at L-elsbetiae_contig713:5868..8159- (Laminarionema elsbetiae ELsaHSoW15)
GAGGTGAAGCAGGGAGGGGAGGCCGTGTATCTAGTGCCGGTTAACTTCGC
GGCGAACTCGGTGGCCCGCGGCTACTCCGGGGGGGCGCTGCACGTAGACG
GGAAGGCAAGCGCGTGATATCGTTCGATTCCGTGTTTTTTGCTCTGGGAG
CGAGGTGCCCCAGCGGTGTTTTCAGCGGGGGTATCAAAATAGCTGCGTAG
CTGCGTATCACTGAAGCGGTCATCGTAGCTGCAGCCGCGTGTGGCGTTAC
ACTGTAGGTACCCTGCCCCAATCAACGATCGCATTTAAGCTCTGCTTCCC
TCGGTCCAAAATTGGCTTCGCGCGGGTACATACGATCGACACGCCAGAGA
AGGATCAAAGTGAGCCCCCCCGCCGCCGCCTTGCCCACGCCAGTAAACCT
GAAGAAAACAACCTCACACTCTCACCTTCGCGGCGGCCGCCATGCCCTCC
TGCGCCCCCTCCTTGTCGTCGTCCTCCTCCGTTGTCCTGCCCCCGCTCTA
CTCGTCTCTCCTGCCTTCTTTTTCTTGTTTCCTCGGCCACAGGTGACGTT
TGCGCACGCGGCGTGCTTCGCCGGAAATCGTGCAGCAGAAGCAGCACCAG
CACCAGCACCAGCACCAGCTTTCGGGCATGGCGGGGATGCACCTGCATCG
TCTTCTGTATCGCCGTTTTCTGTTACGACACCGTCTCCTGTACCGCCGCT
ACCTCCTGTGCCGTCGTCTCGGGGGCGCCGGAACAGTCCTTGCGGAGGGG
CCGTGTCGGTGGGGATCAGCGGCAGGATACACTTCTCGGAATTCGCGAGC
TTCGAGGACAACTACTCCGCGGGGCGGGGGGGGGCTCTGTGCAACCGAGG
GCTGGCCGAGTTCTTCCGTAGAAGCTTCTTCGACGACAACCAAGCCGCCG
GAGGTGTGATATCGATCGAAAATTGAACCGTAGTTTACCGTAGGTGACAT
AAGATAAGACATCCCCTGGACCGATATTGAAAGCTTGGTTACTGCACAAG
ATAAGACACCCCCTGGACCGATATTGAAAGCCTGGTTACTCCACAACGAA
TGCGATTCTCAACCATAAACGCCACATTTTCGGACAGCTCTCGACAAGAC
CTTTCCAACGCTGCCCTTTTCGGGACTGACGCTCTGCTTGCTGTGGAGTT
CTTGAGCTTTGAAAATCGGTCCAGGGGGTGTCTTATCTTATGCCACCTAC
GGTAGTACCACCGGGCGTGTATGTACCATATTTTTGTTTTATTCTTCTTC
TTCCGCGGCGTCGAGTGTGCCCCCTTAAGGGTTTTGTGACCACGGGCGGG
GGGGGGGGCAAGGGTATTTTGGACTAGAGAGCTAGTGCGAGAAACAACAA
CAAACAACAACAATTTCCTGTCGAGGCGCGCACTAATCTGTGTCTGATGG
TTTTGTGTCTTTGCCTTTCTGACTGAGCCTTCGGTTCCATTTTTATGTTT
TCAGCAATACATACGTATGTAAATCTACCTTTTAGCGGGTAAGCTACATA
GCCTGTGATCACGGGAATCGACCGCGTCGAGTGTTTTGTATTAAATCGTA
CGGATAGATGGATGTACTGGATACAAATATTGGAACGGTTTTTATTGTGA
AGACAACAACAACAACAACAACAACAACGGGACTGTCACGGGACTGTCAC
GGGACTGTCACAGGACTAACGGAAACAAGTTGCTGGCGGGGCTTGGTTTA
ATTTTTAGTATAGAGCGCAGGCAGGTCCTCAGCGTCCGCCTCTTGGCGGT
CACGGGACTGTCACGGGACTGTCACGGGACTGTTACAGGACTAACGGAAA
CAAGTTGCTGGCGGGGCTTGGTTTAATTTTTAGTATAGAGCGCAGGCAGG
TCCTCAGCGTCCGCCTCTTGGCGGTCACGGGACTGTCACGGGACTGTCAC
GGGACTGTCACAGGACTGTCAACGGAAACAAGTTGCTGGCGGGGCTTGGT
TTAATTTTTAGTATAGAGCGCAGGCAGGTCCTCAGCGCCCGCCTCTTGGC
GGGAGTTTTACTTTTTTCGTTGTGTGATGGGCTTGCTTACTTGTCCATCG
GCCATTGCGCTTCTCAGCCCAACCTTCAACCTCATGTTTGCCACCAGGGA
ACCAAATACTGTTCTTCTCTCTCGCCGCTTCTTATCTCCCATCGCCCCCG
CCACGCACACGGTGGGTTCTGTAGAAACAATCAATACATCGAAACGAAAA
TCCAACGGGTTAGTGCTTCTGCCGGATAAACGCTGCCAATGCTGTCGATG
CTGCAGTGCACCGAGACGCACCGGCGCTGCTGCAGAGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig713:5868..8159-

>mRNA_L-elsbetiae_contig713.15939.1 ID=mRNA_L-elsbetiae_contig713.15939.1|Name=mRNA_L-elsbetiae_contig713.15939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig713:5868..8159- (Laminarionema elsbetiae ELsaHSoW15)
GAGGTGAAGCAGGGAGGGGAGGCCGTGTATCTAGTGCCGGTTAACTTCGC
GGCGAACTCGGTGGCCCGCGGCTACTCCGGGGGGGCGCTGCACGTAGACG
GGAAGGAGGTGAAGCAGGGAGGGGAGGCCGTGTATCTAGTGCCGGTTAAC
TTCGCGGCGAACTCGGTGGCCCGCGGCTACTCCGGGGGGGCGCTGCACGT
AGACGGGAAGGTGACGTTTGCGCACGCGGCGTGCTTCGCCGGAAATCGTG
CAGCAGAAGCAGCACCAGCACCAGCACCAGCACCAGCTTTCGGGCATGGC
GGGGATGCACCTGCATCGTCTTCTGTATCGCCGTTTTCTGTTACGACACC
GTCTCCTGTACCGCCGCTACCTCCTGTGCCGTCGTCTCGGGGGCGCCGGA
ACAGTCCTTGCGGAGGGGCCGTGTCGGTGGGGATCAGCGGCAGGATACAC
TTCTCGGAATTCGCGAGCTTCGAGGACAACTACTCCGCGGGGCGGGGGGG
GGCTCTGTGCAACCGAGGGCTGGCCGAGTTCTTCCGTAGAAGCTTCTTCG
ACGACAACCAAGCCGCCGGAGGTGACGTTTGCGCACGCGGCGTGCTTCGC
CGGAAATCGTGCAGCAGAAGCAGCACCAGCACCAGCACCAGCACCAGCTT
TCGGGCATGGCGGGGATGCACCTGCATCGTCTTCTGTATCGCCGTTTTCT
GTTACGACACCGTCTCCTGTACCGCCGCTACCTCCTGTGCCGTCGTCTCG
GGGGCGCCGGAACAGTCCTTGCGGAGGGGCCGTGTCGGTGGGGATCAGCG
GCAGGATACACTTCTCGGAATTCGCGAGCTTCGAGGACAACTACTCCGCG
GGGCGGGGGGGGGCTCTGTGCAACCGAGGGCTGGCCGAGTTCTTCCGTAG
AAGCTTCTTCGACGACAACCAAGCCGCCGGAGTGCACCGAGACGCACCGG
CGCTGCTGCAGAGCGGGTGCACCGAGACGCACCGGCGCTGCTGCAGAGCG
GG
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