mRNA_L-elsbetiae_contig7120.15934.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7120.15934.1
Unique NamemRNA_L-elsbetiae_contig7120.15934.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7120.15934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7120contigL-elsbetiae_contig7120:1759..4590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size509
Cds size507
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7120.15934.1prot_L-elsbetiae_contig7120.15934.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7120 1761..4590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.7367225-CDS-L-elsbetiae_contig7120:1760..17841622816790.7367225-CDS-L-elsbetiae_contig7120:1760..1784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7120 1761..1784 -
1691683815.7329924-CDS-L-elsbetiae_contig7120:1760..17841691683815.7329924-CDS-L-elsbetiae_contig7120:1760..1784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7120 1761..1784 -
1622816790.748272-CDS-L-elsbetiae_contig7120:2233..24341622816790.748272-CDS-L-elsbetiae_contig7120:2233..2434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7120 2234..2434 -
1691683815.7455022-CDS-L-elsbetiae_contig7120:2233..24341691683815.7455022-CDS-L-elsbetiae_contig7120:2233..2434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7120 2234..2434 -
1622816790.7593043-CDS-L-elsbetiae_contig7120:4308..45901622816790.7593043-CDS-L-elsbetiae_contig7120:4308..4590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7120 4309..4590 -
1691683815.7550018-CDS-L-elsbetiae_contig7120:4308..45901691683815.7550018-CDS-L-elsbetiae_contig7120:4308..4590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7120 4309..4590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7120.15934.1

>prot_L-elsbetiae_contig7120.15934.1 ID=prot_L-elsbetiae_contig7120.15934.1|Name=mRNA_L-elsbetiae_contig7120.15934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
ALDWSASPAEIVLGDQARSSSKCGLEASGCPQESFPLLGGCEVASCVHVP
MGIDNPSTLVKEEALEETVPALFKATDLRQSNKVAKAMVKRRKKDSIACN
KAIEHLLREGQPSRRTTTADRAHQNVDLAAVRFFVELAQYEGYGGRGIDS
GMEVLDGHMAEIEKRARAQ
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mRNA from alignment at L-elsbetiae_contig7120:1759..4590-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7120.15934.1 ID=mRNA_L-elsbetiae_contig7120.15934.1|Name=mRNA_L-elsbetiae_contig7120.15934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2832bp|location=Sequence derived from alignment at L-elsbetiae_contig7120:1759..4590- (Laminarionema elsbetiae ELsaHSoW15)
GCTCTCGACTGGAGTGCCTCGCCGGCAGAGATCGTGCTCGGCGACCAAGC
TCGTTCGAGTAGCAAGTGTGGCCTTGAGGCTAGCGGTTGCCCTCAGGAAT
CGTTCCCGCTCCTCGGCGGCTGCGAGGTCGCTTCGTGCGTGCACGTGCCG
ATGGGAATAGATAACCCATCGACGCTGGTGAAGGAGGAAGCCCTTGAGGA
GACCGTTCCTGCGCTGTTCAAGGCAACGGATCTGAGGCAATCCAACAAGG
TCGCCAAAGCCATGGTTAAACGGAGGAAGAAGGTATGTACCCCAAGGATG
TAAACATGATGCAGTCTACATCAGGGGTAGAAACGTGGGCTGCGGAGGTG
CGGAGGCTTCGATTATTAGGTAAAATCTGCGCGCAGCGCAGGTTGTCAAA
GGGGCAATCTGCGGCTTGCCGCAGGACACATTTTTGGGCCGCAGGTTTTC
GCCGACAATACCTGCGGCCTCCTTGTGGTGAAACATATTTTTTGGGGGGC
CCTTTTGTTCTCCAGCAGGCGAAGGTTTTTGCCCATTTAACTACATACAA
GATCCCGTTTGTTTTTGATTTATTCTCTCCAATGGTACTGTGTCGTACGT
GAAACTGCTTCAAACCATGTTACTATTCTCCACTACGACTCAAACCCGAA
ATTAACCACATTTTGACTAGTTTGGCTATTTTGAAAGGAGAAGGCCAAAT
TCGAGTCCTCTCGGTGGGCCGCAGGTCGCCTTCGGCTCCGGTCTGCGCAA
CTTTTCTACCCCTGGTCTACGTGTATGTAGGCCAGCGATGCCTTTTGAAC
CTAACTGTAAGTGGCTCGGTCTACGGTCGATTGCAGGACGCATGTACACA
TCTAGTAACAGATACGGGAACTGTGGTAGTTATGAGCAGCCTGGCTGTTT
GAGCTTTCTGTCCCTTTCCGCTTGAACAGCTTGAACAGCTGCTGTTGACA
AACGTCAATCTGTGTTTTCAACGGTCCGCCGGCCAACGGCATAACACAAC
CCTCCCTGTAAGGTTGCTATGGCACGCGCACGCACAGCCCACTCTTCGCC
TATCTCGACCACATCGAGACTGCTGAAGGCAGGACAGTTTTCTTGTAAAG
TTCATGGCACGCACGGTCGATGGTTCTCGCTTCCCTAGGTGCAGGGTATG
TGGGCCATTGGTTGCAAGCCACGCACGTGGCAACGTAAGCGGGTTCTGAT
TCTTTAGTGTGGCAGCTGTTGTCGCGCTGCGGTCCCGCACAAAAAACAGC
CGACACTCCCCTCAGGAAATTCATATAATAGTGTTACGCAATTCGAACAG
CAGTCAAGAAGCAATCTAGCTGTTCTTATGTTGCTGTTTTCGTGCTGTTT
TTGCTATATTTTCTGGCGATGGCAAACACACACACACGCGGAAGCCGGCG
CAATATGTTTTCGCTGGCGTTTTTTGTTTCTTTCCTCCGGTGTTCAACTA
TATTTGAAATCGCTGAAACGCTCCAAGTCGGGCAGAACAACATACAGGTA
TCGGGCGCTTGGTCTACTCTCATGCTTCACTCTCTGGAGTGTCTATCCAT
GGGCAACGTCTGCAAGGAGTCTTGTAGTATGTACCACTGATAGAAGTACT
GGCTTCCTACACAGCCTTGGTGTTAAAATAACAAAGTGGACTTGGAAAAG
CTTGTCTGGAGGAGAGGAAGTAAGGCTGACGGCATACAGAAGAACCACGC
TTTGCGATTGGTGGGGGTAAAGCCCTTCTCGACCATATACATACACATGT
GTAGCATGACATTGTGACAGGCCGTTACCCCCACCGGCTTGCATGCCATG
CATACACTCTTCCGTACGTATTCGAGCCAGTTTGAGCAGGTGCGGAAACC
TTTTTGCCCCGACACCTTACCACCCGATCGCTGTGCTAGTCTAGCTGGTC
GTTCTGATGGGCATCAAAAGCCCCGTGGTTGCACTAACCGTCGACTGTTG
AGCTGCGTACACCCACCGTATTTGCTCGCATTCTCCTCTTGAGCATCATT
TTCTTAAGGCAGCTGGCTAAGCCAGTCGATGCTCGTCTGTCGAAATCAGG
GCGTCGAAGAAATGTGTGTTTTTGTGGTGTGCATGGGACATTTCATACGG
AATGATTTCCCTCCTCCCACACCGCTCGATCCGACTTTGAAACAAATTAT
TTCCAGGATTCCATTGCCTGCAACAAGGCAATCGAGCATCTTCTTCGTGA
AGGCCAGCCTAGTCGGCGAACCACAACAGCAGATCGAGCACACCAAAACG
TAGACTTGGCTGCTGTTCGATTCTTCGTGGAGCTTGCTCAGTACGAAGGA
TACGGGGGAAGGGGGATTGACAGCGGCATGGAGGTGTTGGATGGGCACAT
GGCAGAGGTGAGCTCCAGTTTGTCGATGTATAAACTCACTCTGCCGGCAC
GAGGACGGTACCTTTTAGGCTGCCCATCAAAACGGCCCTCTAGCGTGCCC
TAGTTTCGTGTACAACCTGGGAGCAGTTTGTGTCCTGATTTTTGAGAGGC
CGGCATTTCTGTTTTGTCGAGACTACGTAGCCCCGCTCTTCAGCTCAAAC
ATGTCTTCATGAACTCGAAAAAGGCAATAAATAGGAGTTGCGCCGCGTAT
ATGTAACGTCTGTTTTTTCGAACTGGAACCATGAAAACCATCGGCCTCCT
CGTCGGTATCTAATAGCTGGTGTCGGTCGCCCCCCAACCGTGGCATACCT
TGACGTGTCTCAAGCGTTGTCAATTTGCTTGATGCGCTCTGAGTACCCGC
CCTTTCGAAACCCCCTATTGTATTATTACCCCGAATCCAACGCTGGCAAT
TTCAAGATCGAAAAACGGGCGCGGGCGCAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7120:1759..4590-

>mRNA_L-elsbetiae_contig7120.15934.1 ID=mRNA_L-elsbetiae_contig7120.15934.1|Name=mRNA_L-elsbetiae_contig7120.15934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig7120:1759..4590- (Laminarionema elsbetiae ELsaHSoW15)
GCTCTCGACTGGAGTGCCTCGCCGGCAGAGATCGTGCTCGGCGACCAAGC
TCGTTCGAGTAGCAAGTGTGGCCTTGAGGCTAGCGGTTGCCCTCAGGAAT
CGTTCCCGCTCCTCGGCGGCTGCGAGGTCGCTTCGTGCGTGCACGTGCCG
ATGGGAATAGATAACCCATCGACGCTGGTGAAGGAGGAAGCCCTTGAGGA
GACCGTTCCTGCGCTGTTCAAGGCAACGGATCTGAGGCAATCCAACAAGG
TCGCCAAAGCCATGGTTAAACGGAGGAAGAAGGCTCTCGACTGGAGTGCC
TCGCCGGCAGAGATCGTGCTCGGCGACCAAGCTCGTTCGAGTAGCAAGTG
TGGCCTTGAGGCTAGCGGTTGCCCTCAGGAATCGTTCCCGCTCCTCGGCG
GCTGCGAGGTCGCTTCGTGCGTGCACGTGCCGATGGGAATAGATAACCCA
TCGACGCTGGTGAAGGAGGAAGCCCTTGAGGAGACCGTTCCTGCGCTGTT
CAAGGCAACGGATCTGAGGCAATCCAACAAGGTCGCCAAAGCCATGGTTA
AACGGAGGAAGAAGGATTCCATTGCCTGCAACAAGGCAATCGAGCATCTT
CTTCGTGAAGGCCAGCCTAGTCGGCGAACCACAACAGCAGATCGAGCACA
CCAAAACGTAGACTTGGCTGCTGTTCGATTCTTCGTGGAGCTTGCTCAGT
ACGAAGGATACGGGGGAAGGGGGATTGACAGCGGCATGGAGGTGTTGGAT
GGGCACATGGCAGAGGATTCCATTGCCTGCAACAAGGCAATCGAGCATCT
TCTTCGTGAAGGCCAGCCTAGTCGGCGAACCACAACAGCAGATCGAGCAC
ACCAAAACGTAGACTTGGCTGCTGTTCGATTCTTCGTGGAGCTTGCTCAG
TACGAAGGATACGGGGGAAGGGGGATTGACAGCGGCATGGAGGTGTTGGA
TGGGCACATGGCAGAGATCGAAAAACGGGCGCGGGCGCAGATCGAAAAAC
GGGCGCGGGCGCAG
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