mRNA_L-elsbetiae_contig7119.15931.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7119.15931.1
Unique NamemRNA_L-elsbetiae_contig7119.15931.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7119.15931.1 vs. uniprot
Match: A0A6H5KGV6_9PHAE (Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV6_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.390e-6
Identity = 27/33 (81.82%), Postives = 32/33 (96.97%), Query Frame = 3 
Query:   60 TSGSTRPSSAISKSLPPSPKRAAAEKRLRLSNE 158
            TSG+TRPSSAISKSLPPSPK +AA+KRLRLS++
Sbjct:  320 TSGNTRPSSAISKSLPPSPKPSAADKRLRLSSD 352
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7119.15931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGV6_9PHAE5.390e-681.82Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7119contigL-elsbetiae_contig7119:5096..5466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.5078173-CDS-L-elsbetiae_contig7119:5095..51241622816790.5078173-CDS-L-elsbetiae_contig7119:5095..5124Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7119 5096..5124 +
1691683815.5808146-CDS-L-elsbetiae_contig7119:5095..51241691683815.5808146-CDS-L-elsbetiae_contig7119:5095..5124Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7119 5096..5124 +
1622816790.520932-CDS-L-elsbetiae_contig7119:5297..54661622816790.520932-CDS-L-elsbetiae_contig7119:5297..5466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7119 5298..5466 +
1691683815.591351-CDS-L-elsbetiae_contig7119:5297..54661691683815.591351-CDS-L-elsbetiae_contig7119:5297..5466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7119 5298..5466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7119.15931.1prot_L-elsbetiae_contig7119.15931.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7119 5096..5466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7119.15931.1

>prot_L-elsbetiae_contig7119.15931.1 ID=prot_L-elsbetiae_contig7119.15931.1|Name=mRNA_L-elsbetiae_contig7119.15931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
VADEGDRRRAGRRRRRRRGGLAGAPGLRARSASRCRRRRSVRLRRSAFGS
ATRASVRDPILLLAFD
back to top

mRNA from alignment at L-elsbetiae_contig7119:5096..5466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7119.15931.1 ID=mRNA_L-elsbetiae_contig7119.15931.1|Name=mRNA_L-elsbetiae_contig7119.15931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=371bp|location=Sequence derived from alignment at L-elsbetiae_contig7119:5096..5466+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGCTGATGAAGGGGACCGGCGCCGCGCGCGGGGGTATCGGCGGTCCCG
CGGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCAGGGCTGGGGGCGGCAGG
GCCAGTATGAGCGGTAGGTCCAGCACGAGCGGGAGCCGCCTGTCGAGGCC
ATCTTCCGCGCGGTCGAGGGGATCCGGGGAGGGGCGGGGGAAGGGGGCCG
AGGGGGCGGCGGCGGCGGCGGCGGCGAGGAGGACTAGCGGGAGCACCAGG
CCTTCGAGCGCGATCAGCAAGTCGCTGCCGCCGTCGCCGAAGCGTGCGGC
TGCGGAGAAGCGCCTTCGGCTCAGCAACGAGGGCAAGCGTGCGTGATCCG
ATCCTGCTTTTGGCCTTTGAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7119:5096..5466+

>mRNA_L-elsbetiae_contig7119.15931.1 ID=mRNA_L-elsbetiae_contig7119.15931.1|Name=mRNA_L-elsbetiae_contig7119.15931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig7119:5096..5466+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGCTGATGAAGGGGACCGGCGCCGCGCGTCGCTGATGAAGGGGACCGG
CGCCGCGCGGGGCGGCGGCGGCGGCGGCGGCGAGGAGGACTAGCGGGAGC
ACCAGGCCTTCGAGCGCGATCAGCAAGTCGCTGCCGCCGTCGCCGAAGCG
TGCGGCTGCGGAGAAGCGCCTTCGGCTCAGCAACGAGGGCAAGCGTGCGT
GATCCGATCCTGCTTTTGGCCTTTGATGGGGCGGCGGCGGCGGCGGCGGC
GAGGAGGACTAGCGGGAGCACCAGGCCTTCGAGCGCGATCAGCAAGTCGC
TGCCGCCGTCGCCGAAGCGTGCGGCTGCGGAGAAGCGCCTTCGGCTCAGC
AACGAGGGCAAGCGTGCGTGATCCGATCCTGCTTTTGGCCTTTGAT
back to top