mRNA_L-elsbetiae_contig7113.15927.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7113.15927.1
Unique NamemRNA_L-elsbetiae_contig7113.15927.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7113.15927.1 vs. uniprot
Match: D7FSL8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL8_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.930e-6
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 EYCSGHAKDGMVNVVTKKCTHDGCTKRPSYGNADGK 108
            E+CS HAK GM+NV  K+C H GCTK+PS+G A  K
Sbjct:    4 EFCSQHAKPGMINVRKKRCCHPGCTKKPSFGTAGSK 39
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BLAST of mRNA_L-elsbetiae_contig7113.15927.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.090e-5
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 EYCSGHAKDGMVNVVTKKCTHDGCTKRPSYGNADGK 108
            E+CS H +  MVNVV+K+C H GCTK+PSYG A  K
Sbjct:   23 EFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAGSK 58
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7113.15927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSL8_ECTSI3.930e-661.11EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K5N3_9PHAE1.090e-561.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7113contigL-elsbetiae_contig7113:1317..3803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1355
Cds size723
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7113.15927.1prot_L-elsbetiae_contig7113.15927.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7113 1674..3528 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.0902066-UTR-L-elsbetiae_contig7113:1316..16731622816790.0902066-UTR-L-elsbetiae_contig7113:1316..1673Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7113 1317..1673 -
1691683815.2969823-UTR-L-elsbetiae_contig7113:1316..16731691683815.2969823-UTR-L-elsbetiae_contig7113:1316..1673Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7113 1317..1673 -
1622816790.1399977-UTR-L-elsbetiae_contig7113:3528..38031622816790.1399977-UTR-L-elsbetiae_contig7113:3528..3803Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7113 3529..3803 -
1691683815.3419821-UTR-L-elsbetiae_contig7113:3528..38031691683815.3419821-UTR-L-elsbetiae_contig7113:3528..3803Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7113 3529..3803 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.1005251-CDS-L-elsbetiae_contig7113:1673..17381622816790.1005251-CDS-L-elsbetiae_contig7113:1673..1738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7113 1674..1738 -
1691683815.3087804-CDS-L-elsbetiae_contig7113:1673..17381691683815.3087804-CDS-L-elsbetiae_contig7113:1673..1738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7113 1674..1738 -
1622816790.113076-CDS-L-elsbetiae_contig7113:2758..33561622816790.113076-CDS-L-elsbetiae_contig7113:2758..3356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7113 2759..3356 -
1691683815.3175557-CDS-L-elsbetiae_contig7113:2758..33561691683815.3175557-CDS-L-elsbetiae_contig7113:2758..3356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7113 2759..3356 -
1622816790.1270106-CDS-L-elsbetiae_contig7113:3468..35281622816790.1270106-CDS-L-elsbetiae_contig7113:3468..3528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7113 3469..3528 -
1691683815.3291192-CDS-L-elsbetiae_contig7113:3468..35281691683815.3291192-CDS-L-elsbetiae_contig7113:3468..3528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7113 3469..3528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7113.15927.1

>prot_L-elsbetiae_contig7113.15927.1 ID=prot_L-elsbetiae_contig7113.15927.1|Name=mRNA_L-elsbetiae_contig7113.15927.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
MHPSRLHQGAVIRQGWRQKRYCRDHAKDGMVDVKNKKRTHHGCAKQPSYG
KAGGKAEYCYDHAEDGMANVVEKICIIPGCATMVNSGAENTGTRKVCVRH
AGEGMIHLAGRSGGGSERSGEQNDTGARASGSTASRAGCRGQQGSRAPLP
FAADASSGESRETNKRSVNNANLPTVRVKSETVDNEADDENAAACPEPDA
MVKTEGVNVPCKTEPTAAAGRQGAARTKRRKTAGGQARGS*
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mRNA from alignment at L-elsbetiae_contig7113:1317..3803-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7113.15927.1 ID=mRNA_L-elsbetiae_contig7113.15927.1|Name=mRNA_L-elsbetiae_contig7113.15927.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2487bp|location=Sequence derived from alignment at L-elsbetiae_contig7113:1317..3803- (Laminarionema elsbetiae ELsaHSoW15)
GAGTACTGCTCTGGCCATGCCAAGGACGGGATGGTGAACGTTGTCACCAA
GAAATGCACCCATGATGGTTGCACCAAGCGACCGTCATACGGCAATGCAG
ACGGCAAGGCTGAGTACTGCTCTGACCATGCCAAGGACGGGATGGTGAAC
GTCATCAGCAAGAGATGCACCCATGATGGGTGCACTAAGCAGCCGTCGTA
CGGCAAAGCTGGCGGCAAGGCGGAGTACTGCCGTGACCATGCGATGGACG
GGATGGTGGACGTTGTCACCAAGAAATGCACCCATCACGGCTGCACCAAG
GTGCCGTCATACGGCAAGGCTGGCGGCAAAAGAGAGTACTGCCGTGACCA
TGCTATGGACGGGATGGTGGACGTGAGGAGCAAGAAATGCACTCACCACG
GCTGCACCAAGGTGCCGTCATACGGCAAGGCTGGCGGCAAGACTGAGTAC
TGCCGTGACCATGCCAAGGACGGGATGGTGGATGTCAAGAACAAAAAACG
CACCCATCACGGCTGCGCCAAGCAACCATCATACGGCAAGGCTGGCGGCA
AGGCGGAGTACTGCTACGATCATGCGGAGGATGGGATGGCGAACGTCGTC
GAAAAGATATGTATCATTCCTGGGTGCGCCACAATGGTCAACAGCGGCGC
AGAAAACACTGGCACCCGGAAGGTTTGCGTACGGCATGCTGGAGAAGGCA
TGATCCATCTTGCTGGCCGGTCCGGGGGAGGCAGCGAAAGAAGCGGCGAA
CAAAATGACACGGGAGCAAGGGCTAGTGGCAGCACTGCTAGTCGCGCTGG
TTGCCGTGGACAGCAGGGGAGCCGCGCCCCTTTGCCGTTTGCCGCAGATG
CTTCCTCCGGCGAGAGCAGGGAGACCAACAAGCGATCTGTGAATAACGCA
AACTTACCCACAGTCCGGGTGAAGAGCGAGACGGTCGACAATGAGGCCGA
CGACGAGAATGCTGCTGCATGCCCGGAGCCGGATGCTATGGTAAAGACGG
AAGGTGTGAATGTGCCTTGCAAGACCGAGCCGACGGCAGCTGCAGGTGCA
CTGAAATCAAGTACTCAGGAGTAGTCGATGTCTCGGAGTGCTGTTGGTTT
GTTCAGGTTGATTGTAGAAGAGAGGCTACGGTTCAAGACAAAACTCAGTT
ACAGTAGTACCACGCGCACCAATCGAAGAACCCTGTAGACACCGCCACTG
CAGTGTTGAATGTCAAACATGTGCAGTAACGGCGCGGCGAGGCCGGTTTG
GAAGTCTTACTTGCCTCGATCCGCCGCTCGTTTTGTTTTGTGGGCGCTGG
AGACCCACGTGCTATGATCCAATATCGTACAGAGGAAGGGCGTTGCACTC
ACTCCGTGTTTCTTTTTTGTCACCTGCACGCGTGTAACTCAATCAAGCTG
CCCCCCATATTGACCTGCTTATATTCAGTCTTTAGAAGCGGTCTAATGGT
TTAATTTTCTTTTCTACAAAAGTTAGTCGTGGGGGTTCAAATAACCCGAC
ACACTTTCACTTCCGAGGAGGGTGACTCCCCTTGCCAGTACTACTGTCCA
TCTAATGTTTCATTCGCTTCACTCGGCCGAATGTCCGTCGCCGATACTCT
CAACGAGTATCCAGGCCTCAGGACCGTCCGTCGCCCATACTCTCAACGAG
TATCCAGGGCCTCAGGACTTTCTGTATCACCCATACTCTGGCCAGGAGTA
TCCAGGGTCTCAAGAGAAAAAATGCTCAGTCTAGGATTCGAACCCACGAC
TAACTTTCATAGAAGCGGAAATTAAACCATAATTTCCGCTTCTAAAAGTC
TGTTGTCGTCCGCCATCGGGGCAAGTGTTGCTTTGTCACCCATCTACGAT
AGAGCCATCGTTGCTGGACCGTGCAATATTTTGTGCGACACAGGGACATG
TGGTATCGTCACGCTTGGCACATCACAATTCCACATGACGGGTATCATAC
GCCCCCACCACCCCCCGGCTTTGTTTGTTTTCCATCTATCGTGAGCTCAT
TTGCGTGCTGATCTATCGTCCGGACGTGGCTCTTGTGCGCCCGCCCCCTT
CTCCAATCAACACAGGCCGTCAAGGTGCAGCGAGGACGAAGCGGAGAAAG
ACCGCGGGGGGGCAAGCGCGAGGTTCCTGATATCACACCAGCGGCAGCAG
TACCGTACCATGGTGCACGCAGCGAACCGTGGTGGGACAGGGTGGCCATG
AGCGCCTGCAAACAGCGAAACCACTGCCAGCGTGTGGTTGAATTGAATTT
ATACAGTCTACTTTTGTTGAGCGGGATGGGCTGTCGCACGTGCATACGTT
GTTGTTTTTCTCGCGGCACAACAGACCCAGGGGTATCTTTGTGTATCTGC
CGTTCGTGGGTGTCCCAGGGTTCAGGCTACCTCTTTGTGTCATGTGGTTT
TATTTGTTGTATTTGTGCTGCTTTTCCGCCTGATTCTGTGTTCTGTGTTG
TCTCGAATTGGCTATCGTGTACCTTTTTCGAAGAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7113:1317..3803-

>mRNA_L-elsbetiae_contig7113.15927.1 ID=mRNA_L-elsbetiae_contig7113.15927.1|Name=mRNA_L-elsbetiae_contig7113.15927.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig7113:1317..3803- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCCATCACGGCTGCACCAAGGTGCCGTCATACGGCAAGGCTGGCG
GCAAAAGAGAATGCACCCATCACGGCTGCACCAAGGTGCCGTCATACGGC
AAGGCTGGCGGCAAAAGAGATACTGCCGTGACCATGCCAAGGACGGGATG
GTGGATGTCAAGAACAAAAAACGCACCCATCACGGCTGCGCCAAGCAACC
ATCATACGGCAAGGCTGGCGGCAAGGCGGAGTACTGCTACGATCATGCGG
AGGATGGGATGGCGAACGTCGTCGAAAAGATATGTATCATTCCTGGGTGC
GCCACAATGGTCAACAGCGGCGCAGAAAACACTGGCACCCGGAAGGTTTG
CGTACGGCATGCTGGAGAAGGCATGATCCATCTTGCTGGCCGGTCCGGGG
GAGGCAGCGAAAGAAGCGGCGAACAAAATGACACGGGAGCAAGGGCTAGT
GGCAGCACTGCTAGTCGCGCTGGTTGCCGTGGACAGCAGGGGAGCCGCGC
CCCTTTGCCGTTTGCCGCAGATGCTTCCTCCGGCGAGAGCAGGGAGACCA
ACAAGCGATCTGTGAATAACGCAAACTTACCCACAGTCCGGGTGAAGAGC
GAGACGGTCGACAATGAGGCCGACGACGAGAATGCTGCTGCATGCCCGGA
GCCGGATGCTATGGTAAAGACGGAAGGTGTGAATGTGCCTTGCAAGACCG
AGCCGACGGCAGCTGCAGTACTGCCGTGACCATGCCAAGGACGGGATGGT
GGATGTCAAGAACAAAAAACGCACCCATCACGGCTGCGCCAAGCAACCAT
CATACGGCAAGGCTGGCGGCAAGGCGGAGTACTGCTACGATCATGCGGAG
GATGGGATGGCGAACGTCGTCGAAAAGATATGTATCATTCCTGGGTGCGC
CACAATGGTCAACAGCGGCGCAGAAAACACTGGCACCCGGAAGGTTTGCG
TACGGCATGCTGGAGAAGGCATGATCCATCTTGCTGGCCGGTCCGGGGGA
GGCAGCGAAAGAAGCGGCGAACAAAATGACACGGGAGCAAGGGCTAGTGG
CAGCACTGCTAGTCGCGCTGGTTGCCGTGGACAGCAGGGGAGCCGCGCCC
CTTTGCCGTTTGCCGCAGATGCTTCCTCCGGCGAGAGCAGGGAGACCAAC
AAGCGATCTGTGAATAACGCAAACTTACCCACAGTCCGGGTGAAGAGCGA
GACGGTCGACAATGAGGCCGACGACGAGAATGCTGCTGCATGCCCGGAGC
CGGATGCTATGGTAAAGACGGAAGGTGTGAATGTGCCTTGCAAGACCGAG
CCGACGGCAGCTGCAGGCCGTCAAGGTGCAGCGAGGACGAAGCGGAGAAA
GACCGCGGGGGGGCAAGCGCGAGGTTCCTGAGCCGTCAAGGTGCAGCGAG
GACGAAGCGGAGAAAGACCGCGGGGGGGCAAGCGCGAGGTTCCTGA
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