mRNA_L-elsbetiae_contig7113.15926.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7113.15926.1
Unique NamemRNA_L-elsbetiae_contig7113.15926.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7113.15926.1 vs. uniprot
Match: A0A6H5JG88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG88_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.120e-23
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = -2 
Query:   10 RPFDLKQPPRITRIQRLVPFVLAAINALASSRKVLPSPVPVPLVAEPSADSTCSTLAAAFHDARP 204
            RPFDLKQP RI RIQRL PFV+ AINALASSR+VLPSPVPVPL+A+PSA ST ST+ AAFHDARP
Sbjct:  103 RPFDLKQPLRINRIQRLFPFVVTAINALASSREVLPSPVPVPLIAKPSAASTASTITAAFHDARP 167
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BLAST of mRNA_L-elsbetiae_contig7113.15926.1 vs. uniprot
Match: D8LL82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL82_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 7.390e-22
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = -2 
Query:    4 RPFDLKQPPRITRIQRLVPFVLAAINALASSRKVLPSPVPVPLVAEPSADSTCSTLAAAFHDARPAL 204
            RPFDLKQP RI RIQRL PFV+ AINALASSR+VLPSPV VPL+AEP+A ST ST+ AA HDARP+L
Sbjct:   87 RPFDLKQPLRINRIQRLFPFVVTAINALASSREVLPSPVSVPLMAEPAAASTASTVTAALHDARPSL 153
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7113.15926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG88_9PHAE2.120e-2381.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL82_ECTSI7.390e-2277.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7113contigL-elsbetiae_contig7113:944..1427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size484
Cds size321
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.180359-UTR-L-elsbetiae_contig7113:943..11061622816790.180359-UTR-L-elsbetiae_contig7113:943..1106Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7113 944..1106 +
1691683815.3513606-UTR-L-elsbetiae_contig7113:943..11061691683815.3513606-UTR-L-elsbetiae_contig7113:943..1106Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7113 944..1106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.1909618-CDS-L-elsbetiae_contig7113:1106..14271622816790.1909618-CDS-L-elsbetiae_contig7113:1106..1427Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7113 1107..1427 +
1691683815.3652442-CDS-L-elsbetiae_contig7113:1106..14271691683815.3652442-CDS-L-elsbetiae_contig7113:1106..1427Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7113 1107..1427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7113.15926.1prot_L-elsbetiae_contig7113.15926.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7113 1107..1427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7113.15926.1

>prot_L-elsbetiae_contig7113.15926.1 ID=prot_L-elsbetiae_contig7113.15926.1|Name=mRNA_L-elsbetiae_contig7113.15926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MRVIRGGCFRSNGRVERPAPHQHLPGVSADGGGGVRPANANAVTIQSRRM
RLPTREDTVLPGARPGSSKRRSSKKVHDSQFETTQNTESGGKAAQIQQIK
PHDTKR*
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mRNA from alignment at L-elsbetiae_contig7113:944..1427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7113.15926.1 ID=mRNA_L-elsbetiae_contig7113.15926.1|Name=mRNA_L-elsbetiae_contig7113.15926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=484bp|location=Sequence derived from alignment at L-elsbetiae_contig7113:944..1427+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCAGTGCTGGCCGGGCGTCGTGAAAGGCGGCGGCGAGGGTGGAGCACG
TGGAGTCAGCGCTCGGCTCCGCAACCAGCGGCACTGGCACGGGGCTGGGC
AGGACTTTCCTGGAGCTCGCCAGGGCGTTGATTGCGGCCAAGACGAAGGG
CACCAGGCGCTGGATGCGGGTGATCCGCGGGGGCTGCTTCAGGTCGAACG
GCCGGGTCGAACGGCCGGCCCCACACCAGCACCTCCCTGGTGTCTCGGCA
GACGGCGGCGGCGGAGTGCGTCCAGCTAACGCTAACGCGGTGACTATTCA
GAGCCGCAGAATGAGACTTCCAACAAGGGAAGATACCGTTCTACCAGGGG
CCAGGCCCGGAAGCAGCAAGCGGCGCTCTTCGAAAAAGGTACACGATAGC
CAATTCGAGACAACACAGAACACAGAATCAGGCGGAAAAGCAGCACAAAT
ACAACAAATAAAACCACATGACACAAAGAGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7113:944..1427+

>mRNA_L-elsbetiae_contig7113.15926.1 ID=mRNA_L-elsbetiae_contig7113.15926.1|Name=mRNA_L-elsbetiae_contig7113.15926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig7113:944..1427+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGTGATCCGCGGGGGCTGCTTCAGGTCGAACGGCCGGGTCGAACG
GCCGGCCCCACACCAGCACCTCCCTGGTGTCTCGGCAGACGGCGGCGGCG
GAGTGCGTCCAGCTAACGCTAACGCGGTGACTATTCAGAGCCGCAGAATG
AGACTTCCAACAAGGGAAGATACCGTTCTACCAGGGGCCAGGCCCGGAAG
CAGCAAGCGGCGCTCTTCGAAAAAGGTACACGATAGCCAATTCGAGACAA
CACAGAACACAGAATCAGGCGGAAAAGCAGCACAAATACAACAAATAAAA
CCACATGACACAAAGAGGTAGATGCGGGTGATCCGCGGGGGCTGCTTCAG
GTCGAACGGCCGGGTCGAACGGCCGGCCCCACACCAGCACCTCCCTGGTG
TCTCGGCAGACGGCGGCGGCGGAGTGCGTCCAGCTAACGCTAACGCGGTG
ACTATTCAGAGCCGCAGAATGAGACTTCCAACAAGGGAAGATACCGTTCT
ACCAGGGGCCAGGCCCGGAAGCAGCAAGCGGCGCTCTTCGAAAAAGGTAC
ACGATAGCCAATTCGAGACAACACAGAACACAGAATCAGGCGGAAAAGCA
GCACAAATACAACAAATAAAACCACATGACACAAAGAGGTAG
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