mRNA_L-elsbetiae_contig710.15909.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig710.15909.1 vs. uniprot
Match: D7FKD4_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD4_ECTSI) HSP 1 Score: 343 bits (880), Expect = 1.550e-109 Identity = 217/278 (78.06%), Postives = 231/278 (83.09%), Query Frame = 1 Query: 484 EKVFEASRLGFGQLFQNFDTAGDGRLGRADFERMIGGMLERLG--GDVGGRRGEAGKEAAGGXXXXXXXXXXXXXXXXXXXLPSPSPVGPSITHYDETTGVPLAREAVASQQALGHTVVPLSEAYSRRLSRLQTLASSRLMPVRERLLQLRRRFQGRSEEVRAAKAAIERETLADASAIVERLRSVEALKQATLVQGVNSVTAELEGVEKLSDQVARVTASPSSTSTAASPSSAYVPDFEEIEKMVELVQSYRELCNSIDRVASRPFEPGIDVQADDY 1311 EK+FE FGQLFQ FDT GDGRLGRADFERM+GGMLE+ G G+ G RRG XXXXXXXXXXXXXXXX SPVGPSITHYDETTGVPLAREAVASQQALGHTVVPL EAYSRRLSRLQ+LASSRLMPVRERLLQLRRR GR EE+ AA+AAIERETLADA AIVERLRS E LKQATL QGVNSVTAELEGVEKLSDQVARVT PSST + SPS+A PDFE E+MVELVQSYRELCNSIDRVA++PF+P IDVQADD+ Sbjct: 4 EKIFE-----FGQLFQKFDTDGDGRLGRADFERMVGGMLEQFGERGEDGTRRGXXXXXXX-----XXXXXXXXXXXXXXXXXXXXSPVGPSITHYDETTGVPLAREAVASQQALGHTVVPLREAYSRRLSRLQSLASSRLMPVRERLLQLRRRLHGRGEELTAARAAIERETLADAEAIVERLRSAETLKQATLAQGVNSVTAELEGVEKLSDQVARVTLLPSSTPGSMSPSAACAPDFEGTERMVELVQSYRELCNSIDRVANKPFDPSIDVQADDF 271
BLAST of mRNA_L-elsbetiae_contig710.15909.1 vs. uniprot
Match: A0A6H5JBH8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH8_9PHAE) HSP 1 Score: 326 bits (835), Expect = 3.450e-102 Identity = 207/351 (58.97%), Postives = 228/351 (64.96%), Query Frame = 1 Query: 304 RFARNGGVDAKDFQRMWRERENTPPVTGITP---LGGRRSSNEGEGRRRQQDVWRGGGGSVEPEKVFEASRLGFGQLFQNFDTAGDGRLGRADFERMIGGMLERLG--GDVGGRRGEAGKEAAGGXXXXXXXXXXXXXXXXXXXLPSPSP---------VGPSITHYDETTGVPLAREAVASQQALGHTVVPLSEAYSRRLSRLQTLASSRLMPVRERLLQLRRRFQGRSEEVRAAKAAIERETLADASAIVERLRSVEALKQATLVQGVNSVTAELEGVEKLSDQVARVTASPSSTSTAASPSSAYVPDFEEIEKMVELVQSYRELCNSIDRVASRPFEPGIDVQADDYP 1314 RFARNGGVDAKDFQR+WRERE+ P +GGR ++ G R++ GGG V PEK+FE FG+LFQ FDT GDGRLGRADFER++GGMLE++G G G RRG G E G P P P GPSITHYDETTGVPLAREAVASQQALGHTVVPL EAYSRRLSRLQ LRRR GR EE+RAA+AAIERETLADA AIVERLRS E LKQA L QGVNSVTAELEGVEKLSDQ A +T DFE E+MVELVQSYRELCNSIDRVA++PF+P IDVQADD+P Sbjct: 7 RFARNGGVDAKDFQRVWREREHLFSEPDPAPGGDVGGREEASRPGGEARREGRREEGGGGVGPEKIFE-----FGKLFQKFDTDGDGRLGRADFERLVGGMLEQVGERGGDGTRRGSRGGEXDNGNAPSA--------------APQPLPXXXXXXXXXAGPSITHYDETTGVPLAREAVASQQALGHTVVPLREAYSRRLSRLQ----------------LRRRLHGRGEELRAARAAIERETLADAEAIVERLRSAETLKQAMLTQGVNSVTAELEGVEKLSDQTACRVLMDLVCAT----------DFEGTERMVELVQSYRELCNSIDRVANKPFDPTIDVQADDFP 312
BLAST of mRNA_L-elsbetiae_contig710.15909.1 vs. uniprot
Match: A0A835Z0R6_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R6_9STRA) HSP 1 Score: 185 bits (470), Expect = 1.460e-48 Identity = 128/293 (43.69%), Postives = 167/293 (57.00%), Query Frame = 1 Query: 505 RLGFGQLFQNFDTAGDGRLGRADFERMIGGMLE-------------------RLGGDVGGRRGEAGKEAAGGXXXXXXXXXXXXXXXXXXXLPSPS-PVGPS---ITHYDETTGVPLAREAVASQQALGHTVVPLSEAYSRRLSRLQTLASSRLMPVRERLLQLRRRFQGRSEEVRAAKAAIERETLADASAIVERLRSVEALKQATLVQGVNSVTAELEGVEKLSDQVARVTASPSSTSTAASPSSAYVPDFEEIEKMVELVQSYRELCNSIDRVASRPFEPGIDVQADDYP 1314 R GQLF+ FD+ DGRL RA+FE+++ ++ RL G R + PS P+ P +THY+ET GVPL ++AV Q ALGHTVVPL EAYSRRL+RLQ L +S+L+P RE+LLQLRRR R EEV++AKAAIERET+ADA I+ERLRS EALK ATL Q ++ V ELE +++L+ QVA + A + Y +FE KM+ELVQSY +LC S++R ASR + I V +D+P Sbjct: 47 RFEIGQLFERFDSDKDGRLTRAEFEKLMNLRVQQQRQQAPDPDQYSAATAPTRLPGSPSPPRPPHHQRQRHMAADAPNMRWSQPAPAASAAAPSYGYPILPGALPLTHYNETAGVPLRKDAVEEQVALGHTVVPLHEAYSRRLARLQALVTSKLLPAREQLLQLRRRLLARGEEVQSAKAAIERETMADAHTILERLRSAEALKMATLEQRMSDVATELEQLDRLAQQVAGAAGTQEQGGGMAG-AERYTHEFESTAKMIELVQSYGDLCASVERAASRLQDTSIAVTPNDFP 338
BLAST of mRNA_L-elsbetiae_contig710.15909.1 vs. uniprot
Match: A0A7R9UFR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFR6_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 1.560e-10 Identity = 47/123 (38.21%), Postives = 78/123 (63.41%), Query Frame = 1 Query: 907 RERLLQLRRRFQGRSEEVRAAKAAIERETLADASAIVERLRSVEALKQATLVQGVNSVTAELEGVEKLSDQVARVTASPSSTSTAASPSSAYVPDFEEIEKMVELVQSYRELCNSIDRVASRP 1275 RE+L+ L RR + R +++RA +AA+ER T+ D +IVERLRS EALK +TL ++ + A+LE ++++++QV +S T + D + + E++Q + ELC +IDR++SRP Sbjct: 2 REQLMNLLRRTRSRMDDIRARRAAVERTTMQDVESIVERLRSAEALKLSTLGGQLSELQADLEAIDRVTEQVEGARSS-GGVGTGVVDVGGH--DLGPLGSL-EIIQMFPELCATIDRLSSRP 120
BLAST of mRNA_L-elsbetiae_contig710.15909.1 vs. uniprot
Match: A0A7R9YGK8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGK8_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 4.220e-6 Identity = 32/71 (45.07%), Postives = 50/71 (70.42%), Query Frame = 2 Query: 1322 ETAERLEVLRRADRYEQALSVKDQMLWECQQ----LEAKCQEERDLGQEFAEEAQEWVKLTGKLSDRVNAL 1522 ETAERLEVLRRAD+YE+AL++KD MLWE Q L K +++ ++F +E W+ L+ K+++ +++L Sbjct: 18 ETAERLEVLRRADKYEEALALKDAMLWELLQERDALTDKQEKDGKTLKDFEDEMANWLVLSDKMAEEISSL 88 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig710.15909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig710.15909.1 >prot_L-elsbetiae_contig710.15909.1 ID=prot_L-elsbetiae_contig710.15909.1|Name=mRNA_L-elsbetiae_contig710.15909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=444bp MPTKDKKKTGSSKTKSSSSSKKDSSKDKKRSSSRSSSSKRRSKSRSSSRTback to top mRNA from alignment at L-elsbetiae_contig710:6660..17538+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig710.15909.1 ID=mRNA_L-elsbetiae_contig710.15909.1|Name=mRNA_L-elsbetiae_contig710.15909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10879bp|location=Sequence derived from alignment at L-elsbetiae_contig710:6660..17538+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig710:6660..17538+ >mRNA_L-elsbetiae_contig710.15909.1 ID=mRNA_L-elsbetiae_contig710.15909.1|Name=mRNA_L-elsbetiae_contig710.15909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2664bp|location=Sequence derived from alignment at L-elsbetiae_contig710:6660..17538+ (Laminarionema elsbetiae ELsaHSoW15)back to top |