mRNA_L-elsbetiae_contig71.15903.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig71.15903.1
Unique NamemRNA_L-elsbetiae_contig71.15903.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig71.15903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig71contigL-elsbetiae_contig71:22383..26478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1068
Cds size1062
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig71.15903.1prot_L-elsbetiae_contig71.15903.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig71 22383..26472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.2638679-CDS-L-elsbetiae_contig71:22382..228801622816787.2638679-CDS-L-elsbetiae_contig71:22382..22880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 22383..22880 -
1691683813.1512084-CDS-L-elsbetiae_contig71:22382..228801691683813.1512084-CDS-L-elsbetiae_contig71:22382..22880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 22383..22880 -
1622816787.2748008-CDS-L-elsbetiae_contig71:23307..234231622816787.2748008-CDS-L-elsbetiae_contig71:23307..23423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 23308..23423 -
1691683813.1712322-CDS-L-elsbetiae_contig71:23307..234231691683813.1712322-CDS-L-elsbetiae_contig71:23307..23423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 23308..23423 -
1622816787.285341-CDS-L-elsbetiae_contig71:24679..248301622816787.285341-CDS-L-elsbetiae_contig71:24679..24830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 24680..24830 -
1691683813.1819694-CDS-L-elsbetiae_contig71:24679..248301691683813.1819694-CDS-L-elsbetiae_contig71:24679..24830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 24680..24830 -
1622816787.299064-CDS-L-elsbetiae_contig71:26175..264721622816787.299064-CDS-L-elsbetiae_contig71:26175..26472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 26176..26472 -
1691683813.1906428-CDS-L-elsbetiae_contig71:26175..264721691683813.1906428-CDS-L-elsbetiae_contig71:26175..26472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 26176..26472 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.3139892-UTR-L-elsbetiae_contig71:26472..264781622816787.3139892-UTR-L-elsbetiae_contig71:26472..26478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 26473..26478 -
1691683813.199528-UTR-L-elsbetiae_contig71:26472..264781691683813.199528-UTR-L-elsbetiae_contig71:26472..26478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 26473..26478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig71.15903.1

>prot_L-elsbetiae_contig71.15903.1 ID=prot_L-elsbetiae_contig71.15903.1|Name=mRNA_L-elsbetiae_contig71.15903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=354bp
MSVPLLVDIPLENRERSSPLKKLCTAVSRESPDLFRIHGVPCIDRGPDES
GPPVAYEHWNDNSGRSGLSKWQKKGDDIKKTPNFARPSSVSADTPNFFKV
PGVAINSSSAITGVEPVCSPPPQHRPFSLPETYMHGRDAKAADDLKFLPG
RWRETDREIGQWGHATREFHQALVKMRNEATSRTGRHEGTSTPHLDGLRS
TSAELSAPSSRHSRPVSGAGGRRSTPQLESRGQRRGSVGLHGKKTTRDMG
RDEEAQSGRRRASAVEVFMSRLEGERGPRNRRESIAVFQKMLVDCPVNNS
VRFEDEVIAMGASKTRSGAGDAKTTEVKDGALRKVLARRKEAQSIVSRLM
GKQE
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mRNA from alignment at L-elsbetiae_contig71:22383..26478-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig71.15903.1 ID=mRNA_L-elsbetiae_contig71.15903.1|Name=mRNA_L-elsbetiae_contig71.15903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4096bp|location=Sequence derived from alignment at L-elsbetiae_contig71:22383..26478- (Laminarionema elsbetiae ELsaHSoW15)
GGAGAGATGTCCGTACCGCTTTTGGTCGATATCCCGCTTGAAAATAGGGA
ACGGAGCAGCCCCTTGAAAAAGCTCTGCACAGCTGTATCACGTGAGTCGC
CCGACTTGTTCCGCATCCATGGCGTCCCCTGCATTGATCGAGGACCGGAT
GAGTCAGGACCTCCCGTCGCTTACGAGCATTGGAACGACAACAGTGGCCG
TAGCGGCTTGAGCAAGTGGCAGAAGAAAGGCGACGACATCAAGAAGACCC
CTAATTTTGCCAGGCCTTCGTCCGTGTCCGCAGACACTCCCAATTTCTTC
AAGGTGACCCAACTCTACAGAAAAAATGAAACAAAAACTCGGTAAACTCT
GCATCTCTGATAGTAAGAGTGGATTTTGCAATCCGTTGAGGAGAGGTACA
CCAACAAGTTCGGGACAAAGAGCACGAGTACAGCTGTCGACGCATCTATC
TGCAACAAGTCCCGTCTGGAAAAGGGCGATAATGGGGCAGAGGAGGTGCC
TGTGTGTGTGTGTGTGAAAGAAGACAAACTGCCATGCCTATGTATATTAC
AAGCTGTCGAGCCCTGTTTCTCTCTCTCTCTCTCTCTCACACACACACAC
ACACACACACACACACGCGAGCGATTTTGGGGCAACGGCACTCTTGGCGT
GAGCACCATATCGCTACGCGATGGTATCCTCTCGCTGTCTATATCTTTGG
TGTGCCTCCTCTCACCTAGAGTGTGTATGTGTTCGCTTCGTCTCACTGCT
GCTGCTGGTGCTGTGTGTTTTGCTGAAATAATATCTGGGGGCGCTGAGAG
ATCATCCCCGAAAGCAGGGAGTTTGTGGGCTGCATTGGCTGTTTCCCTTA
TTTGATGCCCGCTGGTACGTTCATCTCTTGAGCATTGCCACAAAACACCG
ACCCACAATGCCGGCTGTATTTAATGGATCCACCGAAACTGTCACATATC
TTCTCAATTCCCTGTGTCGATCGCATTTCCCGAAAAATAAGAGAATTGTG
GGGACGTAGACTGCTGACATTTGTATACATTAATTAAAAACCTGTTTCAG
AGGGCGCTTGGGCTATTTTTCGCACTCCGAGTAATCCCCCCCCACCCCCC
ATATCCAGACTCTGTTTTTTTCTGTCAGTAAAGTAAGTATTTCGCAAAAA
AAAAGATCGCTTCACTCGGGGGGCTCATTAAAACTACCTCGGTCTGTTGC
TTCGTGGCTTTTGGAGGCAGCACGCACCTATAATGTGCATAAATTCAACT
CATCACGTGATGGCCGTGAGGTGGCATTGGGATGGAAGTTAAGTGGAATT
GTGATCTGTAGCAGCCCGTTTGGGCCAAATAATCTCTATGGCAGCCACCC
CAAGAATTTAGAACAGGTGTTGGAGCCCCTTTCATAAGGTGGGTAATGTA
AACATCCGGCTGCTGGATGAAGATAACGCGGGTTCGTCAGTCCGTTTGTT
GAAAATGCTGTAGCCCAGATAGACATTGACAATCTGGTAAGTAGGACGTC
CTACAGCTGGGTGATCCAGCCTGCTGTCGGTCTCATTGGTTATCTTGAGA
CATAAACCATGTGTGTGCCCTTCCCATTTAAACCATACGCCCGACAAACT
ACAGGACATAGAAGTATGATATTCCGCTTCTGGTTTTGCACGGTGCAGGT
CCCTGGTGTGGCGATCAATAGTAGCAGCGCCATCACTGGGGTGGAACCTG
TGTGCAGTCCGCCTCCGCAGCACCGACCGTTTAGCTTACCGGAGACCTAC
ATGCATGGCAGGGATGCCAAAGCGGCTGATGATCTCAAATTTCTTCCAGG
TGAAGGGCCTACCCTGCTTGAGCATGACCGTTTGCAAACTACCGAGGCCA
CAAGGATGTTTTCAGTTTAGATGGCATGTGTGTTAACATATACCGCGGGT
GCTGCGGACCGAGAAGTGACAGACCCTGATGTACTCTACAATTGAGTATG
CTCTCGAAGCTGGCGAGGTTGGGTGCTTGAAATACAGAACAATTTAAAAA
GCCATTGCCAAGCGGTACCCCATGTGTTCTATAGATCACTGGCTATACTA
CAGGTTGTTGGGGTACAATAGCAGCATGGAAATTCAAAATATTTCGGGGT
TTCTCCGTCGTTTTCCGGTTGAATTTTCCGGTTGAGCAATTTCCGGTCGG
GAGAAAGTGGTGGTTGGAAAAATCAGGTTCCAAGAACGGCACAACTGCGC
ACTCTGGCGGTCTGGAAAGTTCAATGTTTTTGTTTTTGTGAACTCTCGTT
CCCCACATCCCGTCACCCACAGCAACCAAGTCGCACTTGGCGAGAGCTGT
CATACACAAACATCTATGGCTACTCTCTCCATCTTCCTAGTTGATGCCTG
GCCCTGACGAGAGAGTTGTGTCGGCCCTCGTCAGACGCAAGTCCCTGCGG
TGCTCACGGAACACAGCAGGCAGCGCACCACAAAACACACGATAGAGCGT
CTCCGCCTGCCTCACAACTACACACACAAACTCCCCGCCCCTCACTATCT
ACACACGTGAGGACGGCAGGGCTGCTACGCGCCCGTGCGAGGGCAAGGTG
CTCTTTTATCAGGCACAGAGAGAGCCGCCGCCTTCTTTCTCTGGATTGTG
AAGACTGCCGCTGTAAACGTTTTACACGTGCGGGGCTTTTTTCGCTCGCG
GACAATAAAACAACCTTCTCCCAGCAGAACCTGCCCAGGAAACGTCTACC
CCGCCGATACATAGCACTCGCAAGTAGACGCTACCCCATACTGTGCGCAA
TCAGCACAGGAAGCGCGTGCGCCTCTTCGTTTCCGTCCTAACCGGGAAGC
CTGCACCAGTATATTTTCCAGTCAAAAAACCCGGCTGTTCGCAAAAAAAG
ACCCGGTTGGTTTTTCCGGCTGGAGGTGCGGCGCAACTACGCAACCGGAA
AAAAACACTGTCCAACCGGAAAAAACAGTCCAAACGGAATTTTTTTTGTG
CTGTGGGGAAACCCATAATTTTCCCGAATTTTCCTGACAAAGGCAATAGA
CGATATCTAAAAGAATGAGGTGGACGATTCTCATGCGCGTGCATTTGTTT
GTAAGGCCGATGGCGAGAGACGGATCGTGAAATTGGGCAATGGGGTCACG
CCACGCGAGAGTTTCACCAGGCACTAGTGAAGATGAGGAACGAGGCTACT
TCACGAACGGGTCGACATGAGGTAAAGGCCAGTGCTGTGCAACGGTTGAG
GCTTTCACTCCCGTGCTCCGTTCTTCTGCTACTAAATATTTAGTTAAAGC
AGGAGGTACGTTGTGCCGGATCGGAATATTCCTTTGCCCACGATTGTCGT
GCAGAATGGTAGCAACTTCGACGTTTTATTTGAGCCACGAGCCTTCAACA
CCGTTGCAACAAAAGCTGCGGCCGGTGCTAAATAATGGGTAAAACTTCCA
GCTAAAGCATTTCTAAAACGGTACGTGAAAAGTGTTTTTTGGCTTGGCAG
CTCTCGTTATGTATTGCTTCCTACAATAAAAACAAACCGTTGCACAGCAG
TAGTTGTGTAGAGCGCATATATCGTACGCGGCTCCGCACGCACAAACCCT
CGCTCTCTCCCTATACGCCCCCAACTGGATACCTAATATAAACTGCAGGG
CACATCGACCCCGCACCTCGATGGATTGAGAAGTACTTCTGCTGAGTTAT
CCGCGCCGTCATCTCGTCACTCAAGACCCGTTTCTGGCGCGGGCGGGAGA
AGAAGCACGCCCCAACTTGAGTCAAGAGGACAGAGACGGGGCTCTGTAGG
ACTGCACGGAAAAAAGACAACCCGCGACATGGGGAGGGATGAAGAAGCCC
AAAGCGGCCGTCGACGAGCTTCCGCGGTGGAGGTTTTTATGTCCCGCCTT
GAGGGAGAACGCGGCCCGCGTAATCGACGTGAGAGCATCGCAGTGTTCCA
AAAAATGCTCGTAGATTGCCCAGTAAACAACTCGGTTCGGTTTGAGGACG
AAGTCATCGCTATGGGCGCGAGTAAAACCAGAAGTGGCGCCGGGGACGCA
AAAACGACAGAAGTGAAGGATGGTGCACTTCGCAAGGTGCTCGCTAGGCG
AAAGGAGGCGCAGAGCATCGTTTCTAGGCTGATGGGCAAACAGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig71:22383..26478-

>mRNA_L-elsbetiae_contig71.15903.1 ID=mRNA_L-elsbetiae_contig71.15903.1|Name=mRNA_L-elsbetiae_contig71.15903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2124bp|location=Sequence derived from alignment at L-elsbetiae_contig71:22383..26478- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGTACCGCTTTTGGTCGATATCCCGCTTGAAAATAGGGAACGGAG
CAGCCCCTTGAAAAAGCTCTGCACAGCTGTATCACGTGAGTCGCCCGACT
TGTTCCGCATCCATGGCGTCCCCTGCATTGATCGAGGACCGGATGAGTCA
GGACCTCCCGTCGCTTACGAGCATTGGAACGACAACAGTGGCCGTAGCGG
CTTGAGCAAGTGGCAGAAGAAAGGCGACGACATCAAGAAGACCCCTAATT
TTGCCAGGCCTTCGTCCGTGTCCGCAGACACTCCCAATTTCTTCAAGATG
TCCGTACCGCTTTTGGTCGATATCCCGCTTGAAAATAGGGAACGGAGCAG
CCCCTTGAAAAAGCTCTGCACAGCTGTATCACGTGAGTCGCCCGACTTGT
TCCGCATCCATGGCGTCCCCTGCATTGATCGAGGACCGGATGAGTCAGGA
CCTCCCGTCGCTTACGAGCATTGGAACGACAACAGTGGCCGTAGCGGCTT
GAGCAAGTGGCAGAAGAAAGGCGACGACATCAAGAAGACCCCTAATTTTG
CCAGGCCTTCGTCCGTGTCCGCAGACACTCCCAATTTCTTCAAGGTCCCT
GGTGTGGCGATCAATAGTAGCAGCGCCATCACTGGGGTGGAACCTGTGTG
CAGTCCGCCTCCGCAGCACCGACCGTTTAGCTTACCGGAGACCTACATGC
ATGGCAGGGATGCCAAAGCGGCTGATGATCTCAAATTTCTTCCAGGTCCC
TGGTGTGGCGATCAATAGTAGCAGCGCCATCACTGGGGTGGAACCTGTGT
GCAGTCCGCCTCCGCAGCACCGACCGTTTAGCTTACCGGAGACCTACATG
CATGGCAGGGATGCCAAAGCGGCTGATGATCTCAAATTTCTTCCAGGCCG
ATGGCGAGAGACGGATCGTGAAATTGGGCAATGGGGTCACGCCACGCGAG
AGTTTCACCAGGCACTAGTGAAGATGAGGAACGAGGCTACTTCACGAACG
GGTCGACATGAGGCCGATGGCGAGAGACGGATCGTGAAATTGGGCAATGG
GGTCACGCCACGCGAGAGTTTCACCAGGCACTAGTGAAGATGAGGAACGA
GGCTACTTCACGAACGGGTCGACATGAGGGCACATCGACCCCGCACCTCG
ATGGATTGAGAAGTACTTCTGCTGAGTTATCCGCGCCGTCATCTCGTCAC
TCAAGACCCGTTTCTGGCGCGGGCGGGAGAAGAAGCACGCCCCAACTTGA
GTCAAGAGGACAGAGACGGGGCTCTGTAGGACTGCACGGAAAAAAGACAA
CCCGCGACATGGGGAGGGATGAAGAAGCCCAAAGCGGCCGTCGACGAGCT
TCCGCGGTGGAGGTTTTTATGTCCCGCCTTGAGGGAGAACGCGGCCCGCG
TAATCGACGTGAGAGCATCGCAGTGTTCCAAAAAATGCTCGTAGATTGCC
CAGTAAACAACTCGGTTCGGTTTGAGGACGAAGTCATCGCTATGGGCGCG
AGTAAAACCAGAAGTGGCGCCGGGGACGCAAAAACGACAGAAGTGAAGGA
TGGTGCACTTCGCAAGGTGCTCGCTAGGCGAAAGGAGGCGCAGAGCATCG
TTTCTAGGCTGATGGGCAAACAGGAAGGCACATCGACCCCGCACCTCGAT
GGATTGAGAAGTACTTCTGCTGAGTTATCCGCGCCGTCATCTCGTCACTC
AAGACCCGTTTCTGGCGCGGGCGGGAGAAGAAGCACGCCCCAACTTGAGT
CAAGAGGACAGAGACGGGGCTCTGTAGGACTGCACGGAAAAAAGACAACC
CGCGACATGGGGAGGGATGAAGAAGCCCAAAGCGGCCGTCGACGAGCTTC
CGCGGTGGAGGTTTTTATGTCCCGCCTTGAGGGAGAACGCGGCCCGCGTA
ATCGACGTGAGAGCATCGCAGTGTTCCAAAAAATGCTCGTAGATTGCCCA
GTAAACAACTCGGTTCGGTTTGAGGACGAAGTCATCGCTATGGGCGCGAG
TAAAACCAGAAGTGGCGCCGGGGACGCAAAAACGACAGAAGTGAAGGATG
GTGCACTTCGCAAGGTGCTCGCTAGGCGAAAGGAGGCGCAGAGCATCGTT
TCTAGGCTGATGGGCAAACAGGAA
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