mRNA_L-elsbetiae_contig7092.15895.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7092.15895.1
Unique NamemRNA_L-elsbetiae_contig7092.15895.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7092.15895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7092contigL-elsbetiae_contig7092:2706..3420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size715
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7092.15895.1prot_L-elsbetiae_contig7092.15895.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7092 2848..3258 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.7681313-UTR-L-elsbetiae_contig7092:2705..28471622816786.7681313-UTR-L-elsbetiae_contig7092:2705..2847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7092 2706..2847 +
1691683812.7853558-UTR-L-elsbetiae_contig7092:2705..28471691683812.7853558-UTR-L-elsbetiae_contig7092:2705..2847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7092 2706..2847 +
1622816786.7888312-UTR-L-elsbetiae_contig7092:3258..34201622816786.7888312-UTR-L-elsbetiae_contig7092:3258..3420Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7092 3259..3420 +
1691683812.8111417-UTR-L-elsbetiae_contig7092:3258..34201691683812.8111417-UTR-L-elsbetiae_contig7092:3258..3420Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7092 3259..3420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.7786176-CDS-L-elsbetiae_contig7092:2847..32581622816786.7786176-CDS-L-elsbetiae_contig7092:2847..3258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7092 2848..3258 +
1691683812.798808-CDS-L-elsbetiae_contig7092:2847..32581691683812.798808-CDS-L-elsbetiae_contig7092:2847..3258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7092 2848..3258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7092.15895.1

>prot_L-elsbetiae_contig7092.15895.1 ID=prot_L-elsbetiae_contig7092.15895.1|Name=mRNA_L-elsbetiae_contig7092.15895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MRRISIYRPNRTSMLIYSFTLPPSLPLFFLSVFLSVYLSASLPLALSNVR
GPYLPSAESPREEIQKNARDILEHPRTIHSTEPHHHELAICCRALCLSGR
ANRAATRPAVHALETQDKAAGGCGRQGEGQVFRVFS*
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mRNA from alignment at L-elsbetiae_contig7092:2706..3420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7092.15895.1 ID=mRNA_L-elsbetiae_contig7092.15895.1|Name=mRNA_L-elsbetiae_contig7092.15895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=715bp|location=Sequence derived from alignment at L-elsbetiae_contig7092:2706..3420+ (Laminarionema elsbetiae ELsaHSoW15)
GACGGCGGTAGTTAGTAGATACTGCCACGTCTACCATAGTCTAATATGTG
TGTGTGTGCGTGTGGTTTCCCCTTGTTTGTCACCCTATTTGGTGCACCTG
CCACAATACATCTTTAGGCACATATTCGGGACTGTCACAGCGATGAGGCG
TATATCTATTTATCGTCCGAACCGGACTTCGATGTTGATTTATTCTTTCA
CCCTCCCTCCCTCCCTCCCTCTCTTCTTCCTGTCTGTGTTTCTATCTGTC
TATCTGTCTGCAAGTCTCCCTCTCGCTCTCTCCAACGTTCGTGGACCGTA
CCTGCCCTCTGCCGAGAGCCCGAGAGAGGAGATCCAGAAAAACGCTCGAG
ATATCTTGGAACACCCGCGGACCATTCACTCCACGGAGCCCCATCACCAC
GAGCTTGCCATATGTTGTCGTGCCTTGTGTTTGAGCGGGCGAGCGAACAG
GGCAGCCACACGACCAGCGGTGCATGCGCTTGAAACCCAAGATAAGGCGG
CAGGAGGATGCGGACGACAAGGAGAAGGACAGGTCTTTCGCGTGTTCTCC
TGATGATGTTCCTACCTTTCTCAAATGATGCCACGCCGAGTAGCGACGTT
GTCCTCGACACAAGCAGCAGGCCAGTTCTCCACGACGGCAGTAACAGGCC
CGAACAACAGCATGGTAGTGGCTGTGCTGATACCGATCGGGACGAACCTT
TCTTTTCTGTGGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7092:2706..3420+

>mRNA_L-elsbetiae_contig7092.15895.1 ID=mRNA_L-elsbetiae_contig7092.15895.1|Name=mRNA_L-elsbetiae_contig7092.15895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig7092:2706..3420+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGCGTATATCTATTTATCGTCCGAACCGGACTTCGATGTTGATTTA
TTCTTTCACCCTCCCTCCCTCCCTCCCTCTCTTCTTCCTGTCTGTGTTTC
TATCTGTCTATCTGTCTGCAAGTCTCCCTCTCGCTCTCTCCAACGTTCGT
GGACCGTACCTGCCCTCTGCCGAGAGCCCGAGAGAGGAGATCCAGAAAAA
CGCTCGAGATATCTTGGAACACCCGCGGACCATTCACTCCACGGAGCCCC
ATCACCACGAGCTTGCCATATGTTGTCGTGCCTTGTGTTTGAGCGGGCGA
GCGAACAGGGCAGCCACACGACCAGCGGTGCATGCGCTTGAAACCCAAGA
TAAGGCGGCAGGAGGATGCGGACGACAAGGAGAAGGACAGGTCTTTCGCG
TGTTCTCCTGAATGAGGCGTATATCTATTTATCGTCCGAACCGGACTTCG
ATGTTGATTTATTCTTTCACCCTCCCTCCCTCCCTCCCTCTCTTCTTCCT
GTCTGTGTTTCTATCTGTCTATCTGTCTGCAAGTCTCCCTCTCGCTCTCT
CCAACGTTCGTGGACCGTACCTGCCCTCTGCCGAGAGCCCGAGAGAGGAG
ATCCAGAAAAACGCTCGAGATATCTTGGAACACCCGCGGACCATTCACTC
CACGGAGCCCCATCACCACGAGCTTGCCATATGTTGTCGTGCCTTGTGTT
TGAGCGGGCGAGCGAACAGGGCAGCCACACGACCAGCGGTGCATGCGCTT
GAAACCCAAGATAAGGCGGCAGGAGGATGCGGACGACAAGGAGAAGGACA
GGTCTTTCGCGTGTTCTCCTGA
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